Array 1 50845-51341 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAGQ01000012.1 Mycoplasma gallisepticum strain K6356 Contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 50845 36 100.0 29 .................................... CTCAAATTAAAAAAGATATTTTAAAAAGT 50910 36 100.0 30 .................................... AAAGCGTTTGGCGAATCAATCGAATACTTA 50976 36 100.0 30 .................................... TCAAACGAAAAAATACTTTTGGCGACAACA 51042 36 100.0 30 .................................... AACACCGTTAGTGTTTTGTGGTTTGTTAAT 51108 36 100.0 30 .................................... ACACCCTAAATATCAAACTCGAACAAGTTG 51174 36 100.0 30 .................................... TGTTTTGTGTAGCTATTGATGTCGTAAAGA 51240 36 100.0 30 .................................... AAAACAGAATGTAAATCAAATTCAACGTTA 51306 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Left flank : TTGATAAAGAAGTTGTTGCTAAACTTAATGAAACGTTAGGCCGTGATATTATCTCGTTAGATACTTCTTACTCTAAAATTCTGAAATCAATAATCAAGATTTCAGAAGATTATATAGATCATGAATTTATCTATTCATATCTGGAGTTATTACATTGATCAAAAGAAATTAAAACAATTATCCTTAAAGACTTTGATAATATCGATCTAAAAAGGTTGAGTAATTTAACTCAAACTACTAATCTAATTATTATGAAAAATGATATTATCTATGATCTTGAAAAACATTTTGAGTTTTTTGAGACATACTGCTTGATTGATCATGATTATGAAAATATGATTAAGATTGATAATATGCCTTCTTTTGAATATTTATTAGAAGATATTTTCAAAGTTATGGTTGATGAAGAGTTTAAGACCACAATGTCTTTTCATCAGCTAGAAATAATTAAAAAGGAATTAAAAAAGCACATTAATTAGCTTATTTTACTTGACAATGAG # Right flank : GATTAATATATCAAAAACAAAGTTAGGTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.30,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 28-261 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAGQ01000001.1 Mycoplasma gallisepticum strain K6356 Contig_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 28 36 100.0 30 .................................... CTATGATCTTTAAAGCACAAAGTTAAAGAC 94 36 100.0 30 .................................... TACAAACTCCAATTTACAAAACTGTAACGT 160 36 100.0 30 .................................... TTTGAAGGTGTTAAATATCTTATTTTTGAA 226 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Left flank : GAAGGTGTTAAATATCTTATTTTTGAAG # Right flank : CTATGATCTTTAAAGCACAAAGTTAAAGACG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 1-896 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAGQ01000015.1 Mycoplasma gallisepticum strain K6356 Contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 1 36 100.0 30 .................................... ATGTTGAAAAACTTGAAAAACAAGAGATAA 67 36 100.0 32 .................................... GATCCAAGAAAAGATGAAATCTTAAGATACTT 135 36 100.0 30 .................................... ATCAAATTTATGCTAACATAAGTTCAACTT 201 36 100.0 30 .................................... AAAACTTAATATTACGACTTAAATCGTCTC 267 36 100.0 30 .................................... CTGATTCCGGTTGGTAAACTTAACGAACTA 333 36 100.0 30 .................................... ACAGTGTCAAACGACAAACACACCAAAGTT 399 36 100.0 30 .................................... CATCAACAACAGTATCAACACTTTCAAGTC 465 36 100.0 30 .................................... TCACATCAAAAGCGCGGCAAGTGCTATTGA 531 36 100.0 30 .................................... TCGGTTATTGAGATCTTGAAACACAAGGAA 597 36 100.0 30 .................................... ATAAAACATCGGACAAATACGACATTGATA 663 36 100.0 30 .................................... TTCAAACACATCGAGAGATCGCTATTACGC 729 36 100.0 30 .................................... TTGTCTTGACATTTTGGTTTAGTATGATAG 795 36 100.0 30 .................................... TTCAAACACATCGAGAGATCGCAATCACCC 861 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 14 36 100.0 31 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Left flank : | # Right flank : TAGAATCTTTGTTAAATAGGGGTCGCGTTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 1-365 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAGQ01000014.1 Mycoplasma gallisepticum strain K6356 Contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1 35 97.2 30 -................................... ACCAAAAATGATGTTTATACAACCTAGTTT 66 36 100.0 30 .................................... TTTGTTTTTATCTTGATTCAAAAGACATCA 132 36 100.0 30 .................................... TCTAATACCCCATTTGAATTTGAAAATACA 198 36 100.0 30 .................................... AAGTTACCGTATAACGATATAACTTACGTT 264 36 100.0 30 .................................... AAGCGGCATATCAAATTACGAACGGTGTAG 330 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 99.5 30 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Left flank : | # Right flank : GATCCAAGAAAAGATGAAATCTTAAGATACT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 3169-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAGQ01000017.1 Mycoplasma gallisepticum strain K6356 Contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 3168 35 97.2 30 -................................... AAAAACCCATCAAGTTTGTAGTAGTCAGTG 3103 36 100.0 30 .................................... ACCAAAAATGATGTTTATACAACCTAGTTT 3037 36 100.0 30 .................................... TTTGTTTTTATCTTGATTCAAAAGACATCA 2971 36 100.0 30 .................................... TCTAATACCCCATTTGAATTTGAAAATACA 2905 36 100.0 30 .................................... AAGTTACCGTATAACGATATAACTTACGTT 2839 36 100.0 30 .................................... AAGCGGCATATCAAATTACGAACGGTGTAG 2773 36 100.0 30 .................................... CAATCTCAACTTTAGATCAAAAACTGTTAA 2707 36 100.0 30 .................................... GATTAATATTTCAAAAACCAAACTAGGTCA 2641 36 100.0 30 .................................... AAATGGAAAACGAACAACAAGATAAACAAG 2575 36 100.0 30 .................................... TAGAGTTTTTCAAAAATGCTTACATGAATA 2509 36 100.0 30 .................................... ATTGATTGAAAATGTAAGGTTCGTTGTTCT 2443 36 100.0 30 .................................... GTGCGGCGAGGAATTTTAGGCCGACCACGC 2377 36 100.0 30 .................................... AATACTATGACAACTTACATTATAACACTT 2311 36 100.0 30 .................................... ACATAAACTTCGTTGTTCATGTAGGCGTTT 2245 36 100.0 30 .................................... TTGAAATTTGGATGTTTGGGAATTTACATG 2179 36 100.0 30 .................................... GGGAATTTGCACGGCGAAAATCGGCTAATG 2113 36 100.0 30 .................................... AAAAATTTGGTTTTGGGTATTCTGATAATC 2047 36 100.0 31 .................................... AATTTAATCATTCAAGGTTAGTCGTTTGGGG 1980 36 100.0 30 .................................... GTTAATACCGCACTAAATAGTACTGCTAAT 1914 36 100.0 30 .................................... AACAACTTCTTATCCAACCGCAAGCTTCTT 1848 36 100.0 30 .................................... TTAACCAACAAGACTATTTAGGTCTTTTAA 1782 36 100.0 30 .................................... AAAACTTAACTAATTTAACACAAAAAGTTG 1716 36 100.0 30 .................................... ATCTTATTGTTGTTAGCGTTTATTTGACCT 1650 36 100.0 30 .................................... GTAACAGTTTATAAGCAAATCGGGGTAGTG 1584 36 100.0 30 .................................... TCCACCACCCCACTGTCCTACACTATTACC 1518 36 100.0 30 .................................... AATGAAGAGTACAAAAGAATTGTTGATTTG 1452 36 100.0 30 .................................... ACGTAAATAACAAGAACATAGCGGTTTTTA 1386 36 100.0 30 .................................... AATTTAACCATTCAAGATTAGTCGTTTGCG 1320 36 100.0 30 .................................... ATTAATATTTTTATCAGTGATATTAGCTTC 1254 36 100.0 29 .................................... CCAAAAAGTTGAACAAAATAAAACTAGTG 1189 36 100.0 30 .................................... TCATTAAATGTCGATCAAAAAATAAGTACA 1123 36 100.0 30 .................................... AAATAAGACTTTTTTTGAACTTGAAGATTT 1057 36 100.0 30 .................................... TCAAAATCTTGTTTAATACGTTCTACGTTT 991 36 100.0 30 .................................... TGTTTTTAGAGAACATGGTTGTGGTAGCAT 925 36 100.0 30 .................................... ATCTCTCTAAAAAGTTGACGATCCATCACC 859 36 100.0 30 .................................... AAAACTCGATCTAATTTTGAATGTTTTGTC 793 36 100.0 30 .................................... GTGACTTGTCGTTAATGATGGTGTTGTAGT 727 36 100.0 30 .................................... AAGATGGGTGGTTTGTGTAGATAAGTACGG 661 36 100.0 30 .................................... ACTTTAAAGATAAAACAGCTTTAGAAGTCG 595 36 100.0 30 .................................... AAAAAGAAGGTTACAGATTTAAAAAACATG 529 36 100.0 30 .................................... TAGGCTATTGAGATTTAGAAACACAAGGAA 463 36 100.0 30 .................................... TTAGCAAAAACGAAATAACTCAAAACGATC 397 36 100.0 30 .................................... TTAACATTTCAAAAACAAAATTAGGCTATT 331 36 100.0 30 .................................... TAAATAATGTAATTATATCACGTTTGTCAA 265 36 100.0 30 .................................... TTTTGTCTTGACATTTTTGTTTAATATGAT 199 36 100.0 30 .................................... ATTTTTTAAACCCTGTTAAATACATTAATA 133 36 100.0 30 .................................... TATTTTTTTGCAGGTTTATATAAACTATTG 67 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 48 36 99.9 30 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Left flank : | # Right flank : CTCCCATTCTATTTTAACGTTTGAAAATGAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 265-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAGQ01000005.1 Mycoplasma gallisepticum strain K6356 Contig_05, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 264 35 97.2 30 -................................... TTTGAAGGTGTTAAATATCTTATTTTTGAA 199 36 100.0 30 .................................... CTATGATCTTTAAAGCACAAAGTTAAAGAC 133 36 100.0 30 .................................... TGTCTTTAGAGACAACGGATGTGGAAACAT 67 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 99.3 30 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Left flank : | # Right flank : CCAATAAATCAAAAAATTCAAGAATTAAATGG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 301-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAGQ01000007.1 Mycoplasma gallisepticum strain K6356 Contig_07, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 300 35 97.2 30 -................................... TCGGATTATTTCTATTACTTATTCTTAAAT 235 36 100.0 30 .................................... ATTTTAAAGATAAATCTGCGCTTGAAGTTG 169 36 100.0 30 .................................... TATACAACTTAGTTTATGACGTTTATATAA 103 36 100.0 30 .................................... TACAAACTCCAATTTACAAAACTGTAACGT 37 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 99.4 30 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Left flank : | # Right flank : CT # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [1.7-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //