Array 1 20348-20947 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGUR01000002.1 Streptomyces viridochromogenes strain NRRL 3413 P009contig1.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 20348 29 86.2 32 .CA...........T..........G... ACGGATCTGCTGGTGGTCGGCTTCGACCTGCG 20409 29 93.1 32 .........................A..G ATCCCTCCGGCGAACTGCTCCCGCTGCCGCGA 20470 29 100.0 32 ............................. ATGTCTTCCGGCTTTTCTCCAGGCTTGAGGAA 20531 25 79.3 0 T...........T............---- - G [20548] Deletion [20557] 20556 25 69.0 32 ---G...T....TA...-.......G... TCATAGGTAACTTCCCATCGGGCCATGGGCAC 20614 29 82.8 29 ................G...TT....C.A GGTCTGGGATACCGACCACCTGCAGACCC GT [20623] 20674 29 69.0 32 ........TG...AT....A....GGC.G TTCTCGTACATGCGGCGAACCTTGATGCGGTC 20735 29 79.3 32 .C.C........A............GC.T GGCTGATGGATCTGGTCTCGGTGATTCCAGGA 20796 29 72.4 32 ACAC........T............GC.A GGCGCCTATCTCTCCGCCCTGAAGACCCATCT C [20809] 20858 28 86.2 32 ..TC.......-..............A.. CCACCAGGCAAGCGCTTGCCGGAGGACGCATA A [20871] 20919 29 79.3 0 .G.........G..T....A...T.G... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 81.5 29 GTCTTCCCCACACGCGTGGGGGTCTCTCC # Left flank : TCTCGAACACGACGACGGCGCCGTCATCGCCCGCGCGACCGTACGAGCCTCCAGCCAATGGCGACAGGCGGCCCGCACCCGCCACAGCGCGGTGGTCTACTTCGGCTACGGCTTCGCCCTCCACGACTCCCCCACACACCGGCGACTCATGGCCTCACCCACCGAACTCGGCCGCCACATCAACAGCGCCAGCGACAACGGCCTCCTCGCCGCAGGACTCGTATCCGTCCGCCTCCAACTCGCACCGTCCGTACAGCACCGGCCGCCGGCTACAGCCCGCCAGCAACCCCGCCGGTCGACCCGCGCCCGACGGAGGAAACCTCACAGGTAAGCGCAACTGCCACGCTACTGGCGACCCAAATCCACCTATCGGTCGGGCAGTTCAGGCCGAACCACGATAGGCAACCGCCGCCAGGCAGCGGCCCTCAACCCGCACGGTCAGACCATGTAAAGTGAACAAAAAACGCCTTGCTGATCTCCAAAACCACAAGTGAGCAAGG # Right flank : CATTGAGGCGATCGTCTCTGGGGCTGCAACAACGTTGCCTACAGCTGGGCGGTCGGCGTGGTGGCCGCCGCCACACTCGGCCTCGACATACGGCACCACTACCAGCAGGCGCGGCGGCCGCGCGAAGGCACGCAGCGCCACGAACCGAAACTCATCAGCCACTCCCCCACTGTGGCGAAACATCCCTCACCCAGGCAGCCGAGCTATCCCCACGTGCGGCACGCTCCCGTTCCCGCGATGCCTCGCTCGGCCACCAGCAGGCACAACCCGACCCGGGTCTTCCGGACACCGCAGCACGCGACACCTGAGCTGGCCACGCAGCGAAGGACCAGCGAAAACACGCCACTCGATGCCCCAGGGCACCGCCGGAGACCAGCCACCGAACCGAGCATCCAATACAGTTGGGACAGAAAATTGCAGGTCAGACGGATACTCCTATGGGCTTCTCATTTCAATGCGCTGGAGATTCTCAATCGATGTCACCAACCCTTCTCGTTTGA # Questionable array : NO Score: 2.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.07, 5:-1.5, 6:0.25, 7:-0.29, 8:1, 9:0.20, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACGCGTGGGGGTCTCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTGTCCCCACACGCGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.90,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 308356-305642 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGUR01000230.1 Streptomyces viridochromogenes strain NRRL 3413 P009contig6.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 308355 29 100.0 32 ............................. GACCCCCAAGGGGTGGTCGGGGGACTGCCAGG 308294 29 100.0 32 ............................. ACTCAGGTTCCACTCGGACATCGGCGGGCTCC 308233 29 100.0 32 ............................. ATGAGCGCCGCTTGTGGAACGGGTGGGGGCTG 308172 29 100.0 32 ............................. TCCTCATCGGTCATGCGCCCGGGGTTCTGGGA 308111 29 100.0 32 ............................. GCACTGCTCGTCGGGGCCGGCATCGACACCGC 308050 29 100.0 32 ............................. TCGCCGCACCCAACTCGATCGACCGCCGCATC 307989 29 100.0 32 ............................. CCCCGACACCCTGTTCGACCTGCCGGTTCGCT 307928 29 100.0 32 ............................. TCCTCGACACTCATCTCGCCGTAGGTCTCCAG 307867 29 100.0 32 ............................. GACACGCGCGGCTGCCCCTGGTGCCGCATCGC 307806 29 100.0 32 ............................. CGGTCGGGCTCGGTGCTGCTGGCGGACGTTCT 307745 29 100.0 32 ............................. TTCCATTCAAGCCGATAGCGGGCATGTAGTGG 307684 29 100.0 32 ............................. GAGGGCCGTCTTTATCCGCAGTCCTTCCTCGG 307623 29 100.0 32 ............................. ACTTCGACGCCTACCAAGGTCGCACCTACGAC 307562 29 100.0 32 ............................. GAGGGGACGAGCTGCCTGGGGCGCAGAGGCCG 307501 29 100.0 32 ............................. GGGCAGGATGGCCAAGACGGACGAGACGGTTC 307440 29 100.0 32 ............................. GTCACCAGTTTCGCGCCACCGGGCGACGCGTT 307379 29 100.0 32 ............................. GTGCGGATCATCACGGGGAGCTGCATACCGTC 307318 29 100.0 32 ............................. CGGCGAGATCGACTCAGCGACACTCTTGATGA 307257 29 100.0 32 ............................. GTGTAGAAGAGGCAGTCGAGCGCCTCCGCCTT 307196 29 100.0 32 ............................. GTCAAGGGCGCCGTGGACTCGCTGCGCAGCAA 307135 29 100.0 32 ............................. GTGAACCTGGAACAGATCGGCCGGATGCTCCA 307074 29 100.0 35 ............................. CCCCCCGAGTCATGGGGCGGTGACGGCTCTGACGC 307010 29 100.0 32 ............................. AGTCCGGGATACGAGGCGGGACGTACGACGCC 306949 29 100.0 32 ............................. CAGCCGATCAGACCGCCGATGGCGATCCGCAC 306888 29 100.0 30 ............................. CACCGCGTTCTTCTCCCTCGAGATGGGGCG 306829 29 100.0 32 ............................. GCCTGCGGAGAACTCCCGCCCTGCGCTCACGA 306768 29 100.0 32 ............................. GGGTCCACCCCGATCGGGCTGGAGCTGGAGTC 306707 29 100.0 32 ............................. CCGGCGGGGCCGCCAGGCCGGGCCGCTTCGCG 306646 29 100.0 32 ............................. CGCCAAGAAGAGCGCGGCCACGCCCCGGTCCA 306585 29 100.0 32 ............................. GTGTCGTCCTCGACGGGCTCTTCCTCGAGTGT 306524 29 100.0 32 ............................. CCGGACTCGAACCCGGCGCTTCGATCGCTGGG 306463 29 100.0 32 ............................. CAGTACGGGCCGCCGTACTCACGGTTGGAGAT 306402 29 100.0 32 ............................. GGTCCGCCCGTCCTCGGTGCGTCCGACGTGGG 306341 29 100.0 32 ............................. GGTTCGGCCCTCGACTCCATCGGCGCGGTGCG 306280 29 100.0 32 ............................. CAGCGGTCCGAACAGCTCCGCGGCACGATGAT 306219 29 100.0 32 ............................. GACGACGCGCTCACCGCTCTGTATCCCGTGGT 306158 29 100.0 32 ............................. GCGGCCGTCTGCCGGAAGCTGATGCTGGACGG 306097 29 100.0 32 ............................. GATGCGCCCCTGGACCCCGCGATCCTCAACAT 306036 29 100.0 32 ............................. CTCGTCAAGGTGGGCGGCCCGGCCCTCGGTGG 305975 29 100.0 32 ............................. AACTGCCCAGCGAAGTCCCCAAGTGCCAGGGC 305914 29 100.0 32 ............................. CCGCGGTAGATGCCGTTCGGCGCCGTCCAGGA 305853 29 100.0 32 ............................. CCGATCAGGAACAGATCGCGCAGCTCGAAGCC 305792 29 96.6 32 ............T................ CGCCCCGCGGGCGGCGCCGGATGAGGGAGCCG 305731 29 100.0 32 ............................. GTGTGCCGGAACTGATGCGGGTGGATGTGCTC 305670 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =================================== ================== 45 29 99.9 32 GTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GCAGGTGGCCTCCGGACACAACTACGCGGACGCGGACGACGAGGAAGCGATGCCCTGGTGACCGTGATCGTCCTCACCAACTGCCCGTCCGGGCTACGCGGGTTCCTCACCCGCTGGCTCCTCGAAATCTCCGCCGGTGTCTTCATCGGCAACCCGTCGGCCCGCATCCGAGACGCCCTCTGGAACGAAGTCCAGCAATACGCGGGACAGGGCCGCGCCCTCCTCGTCCACACCACCAACAACGAACAGGGCTTCACCTTCCGCACACACGACCACGGATGGCACCCGATCGACCACGAGGGCCTGACCCTTATCCGCCGCCCGAACCCCAACACCCAGCCCACCAACAACACTCCCAAACCTGGCTGGAGCAACGCCGCCAAACGACGCCGCTTCACGAGAGGCTGAAGTCCAGAATGCCAGCCCTGTGCCAAATGTCGGAACCCGTGAAAGTACTGGAGAACCTGGCCGACCACGCCTAAAGCAGCAGGTTGCGAAGT # Right flank : GCGTCAAGTCCAGCCATGAACCCCGTTGTCGGTCAGGACGCGTTCGACGGTGACGTGGTGTGCGGCGAACCAGGCGGTGGCGCGGGTGAGGAAGCCTGCGCAGGTCGGGGCGGTCTCGTCGGGCAGGTCTTCGGTGTAGGCCAGGCGGGAGTGGTCGTCCAGGGCGGTGTGCAGGTAGGCGTAGCCGGTCCCGGTCCGGTTGCGTCGGCCTTCGGCGCGTCCTTGGGTGCGGTGGCCGCCGCCGTCGGGGATGCGGCCGAGTTTCTTGACGTCGATGTGGATCAGTTCGCCGGGCCGGGAGCGTTCGTAGCGGCGGACTGGCTCACCGGTGGCCCGGTCCAGCGCGGCCAGGACGGGCATGCCGTGGCGTTTGAGGATGCGGTGGGCCGTGGACGCGGCGATCCGGGTGCGGGCGGCCAGCCGCAGTGGTCCGATGCGGTGCTCTCGCCGTATCCGCACCACCTCTGCTTCAACCGTGGCGGGCGTCTGCCGGGGTGAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 318081-321434 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGUR01000230.1 Streptomyces viridochromogenes strain NRRL 3413 P009contig6.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================================================ ================== 318081 29 100.0 32 ............................. GCCTGCGTGAGTTCGGCGTCCTGGGCTTCGTT 318142 29 100.0 32 ............................. GCCGGGCGGCTCATGCTGCCCACGGGCCTCAC 318203 29 100.0 32 ............................. GTCTCGTCATGAGTCAGGGCGATGTTGGGGCC 318264 29 100.0 32 ............................. ATCCCCGATCTCTTCGCGTGGATTGTCGGGGT 318325 29 100.0 32 ............................. TCCGCTGCGGCCCGGATGCTGCGCGCGAGATC 318386 29 100.0 32 ............................. CGCAGTCGGCCTCTACCTACGCGAGGGCTACG 318447 29 100.0 32 ............................. AAGGCCGACGTCTACGCCGCGACGCTCGCGAG 318508 29 100.0 32 ............................. CCGAACGCCCTCTGGCTGATGGCTGCTCCGAT 318569 29 100.0 32 ............................. GTATCCGGACGCCGCGAACGACGTGTTGGTCT 318630 29 100.0 32 ............................. CAGGCCCCTATGGCGGCTTCATTTGCCGATCT 318691 29 100.0 32 ............................. AGGTCGAGCTGGTCGGGCTGGTCTTCGATGCG 318752 29 96.6 32 ............................T GACAACCGTGCATCGGAGGCCGATAGTCCACG 318813 29 100.0 32 ............................. AACGGGATCAAGTGGCGGTCCCTGGGCAGAGA 318874 29 100.0 32 ............................. TCCTAATCTCGTCAGTTAGACGATAACTAGAG 318935 29 100.0 32 ............................. CACCCGGCCCAGATCCGGGTGACGGAGTCGTT 318996 29 100.0 32 ............................. TCCTCGGTCGGCAACGGGGTGCCGGGGTTCTC 319057 29 100.0 32 ............................. TCACCGACCAGCAGCAGGCAGCGCTCAAGCCG 319118 29 100.0 32 ............................. GACGAGCTGACCCTGGCGGGGGTGGTGGTGAA 319179 29 100.0 32 ............................. TCGGTCGGGCTCGGCTCCGGGCTCTCGGCCTT 319240 29 100.0 32 ............................. CGCGTCACCGGGAAGTTCCTGGAGCCCACACC 319301 29 100.0 32 ............................. TCGGTGGAGAGTTCTTCTTCGGTGCGGCCGTT 319362 29 100.0 32 ............................. GAGCTGGACACGCTCGCCGCTACCTTGCGCGG 319423 29 100.0 32 ............................. GGCGACCAGCCCCGCATCCGCATGCACTTCGC 319484 29 100.0 32 ............................. ACAGCCCTGACCCAGATGAGGGCGACGGGCGT 319545 29 100.0 32 ............................. AACCGGATCGTCGAGCCGCACGAGCGGATCGT 319606 29 100.0 32 ............................. TCGAACCTGGCCGCCACGGCAACATCGGGAAA 319667 29 100.0 32 ............................. TCGAACCTGGCCGCCACGGCAACATCGGGAAA 319728 29 100.0 32 ............................. GTCGGCCCGTACGTCCAGGAGCAGCGTCGGTA 319789 29 100.0 32 ............................. TGGGCGACGTCGTTGCTTTCGACGCGGACCAT 319850 29 100.0 32 ............................. GCGCCGAACAAGCCCGCCAGTGGGATGCCATC 319911 29 100.0 32 ............................. TCGGTGACCCGCTGCTCCAGCTCGGCCATGCG 319972 29 100.0 32 ............................. GATGTAAGTCGGTCTGGTACGGGTGAACTCCT 320033 29 100.0 32 ............................. AACAACTACAGCGCACGCCTCGGATTCCAGAC 320094 29 100.0 32 ............................. AGCACGGGTACGCGAACGGCCCCACCCGCATT 320155 29 100.0 32 ............................. TGGGTGGTGACGGGGCGGCCGTGCTGCCTTAT 320216 29 100.0 32 ............................. ATCCCCTGCCGGGCCGCCGGGTTGAACCCGAG 320277 29 100.0 32 ............................. GACGGCACCGCCGCATCCGGCTCCGGCTACAA 320338 29 100.0 32 ............................. TTCAATGGCGGAACGGCCTTGAGTTCGCCGGT 320399 29 100.0 32 ............................. GCGGTCGTCCTCGCCGTCCTCGGACTGCTGAC 320460 29 100.0 32 ............................. CGCGCCCTGCCAGTCCTGAAGGGCCGGGACTT 320521 29 100.0 32 ............................. AAGTGCGCTGAGAAGGACTGGGACTACAAGGG 320582 29 100.0 32 ............................. ACGGTCCGGAACGCGCAGGAGCGGGTGGCGGA 320643 29 100.0 32 ............................. CCGCGCGGGCACCGCTGGGCACAGTACGGCGT 320704 29 100.0 32 ............................. GGGATCGTCACGGTCTCGGCGTTGGAGGAACG 320765 29 100.0 32 ............................. AACCAGGTCTACGACCTCAGCCGTAGAGACGA 320826 29 100.0 32 ............................. CATGCAAGAGTGTGCGGTGATCGGCGCGGAAC 320887 29 100.0 29 ............................. AAGGCGAAGGACCGCATCAACAACACGGT 320945 29 100.0 32 ............................. GACTACCGCTCCCGCCGGGGCGAGGGCCCGGA 321006 29 100.0 32 ............................. CGGCTGGTGGTCACCCCGAAGATGCGCCGGCG 321067 29 100.0 32 ............................. CTGGAGGAGATGCTCCCGCGCGTCGGCGAGAT 321128 29 96.6 32 ...................T......... TTGCCCAGCTCCGGATCGTCGGCCAGCCGGAA 321189 29 93.1 32 .................A....C...... AACTTCGCCCGCTACGGCAGCCGCGTCGCGAA 321250 29 93.1 128 ..........................TG. CGGTGAGACGTCTGCGAGCAGGGCGGTCTACCTCCGCTCGCGCGGAGAGCACCGTTTCGATCCCGCCGGATCACCCCCGCGTCGACGGGGAGCACGTGCCGCAAGACGGGCACGCGATGTGCTGATGC 321407 28 75.9 0 ...........CGA....C..-..A...G | ========== ====== ====== ====== ============================= ================================================================================================================================ ================== 54 29 99.2 34 GTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GTGCACACCTGCCAGCCAGACCGCCAGCCGCCGGCCATCCCGCTCACCACCCGGCAACGCCTCGGATATCAAAGCCCGTACGTTCGCGGGCAGCCACCGGTCCCACAACAGCCCCGCCACCGCGGCGCTGTCCTCCATGTGCCGCCACAACGGCAACCAGCCCTCGCTGTCCCGGTCATGCTTCGCCCACACCGTCCGCACCGACCCCCTGAGCCGATCTCCCAGCCCAGACCCGGACTCTCCGTTATGCGCCATCCCTGATACATACAGGCAGATACCGCCCGACAACTCCTCCTTCGACAAACCCGAACACCGTCGCGACCTGAGTCCGCACAGCTCCACGCATCGGCAGGCCTGCCTGACGGCGACGTACACTCCGCCTTCAGCCTCAAACTGACGACCAACGACCGGTAGATTTGCACCCTATGAGGGGAATGGCCGTCTCGGTGAAAGTACTTCCGAACCCCGCTCGGCAGTCATGACACTGCAGGTCACCGAGT # Right flank : GTTCCCGTGGGCCATGTACGTCCAGCAGGGCACCGCTTCAGGGGCTGAGGATGTGGCCTTCGGCGTCTACCAGCCGGCCGTCACCTCCGCCCTGCCGCCTGGCTGGGTCGGCAACAGCTCCGGGGTCGGCAAGCCCGCGATGATCGCTCCCCGCTGGGACGCCGGGAAGTATCTAGGCAACTCCACCGGCGGCTCCGACGCCGCCAACATGGGCGCCGCTTCTTTCAGTTACCTGGCCACCCTCGTCCACGGCACCAAATCGACCGCTCCCGAGCGCGGCGTGGCAGCGCACATCAAGAAGGGTGTAGCTCGCCCGAGTGACCTGATCGTTTAGGCGGTGAGGTCGTACTCGTTCTGGTAGCGGGCTTGGTGGACGCGTTCGTGTGCGTGTTGCACGTGGAAGGCCCGTTCACCGATGCCGGGATCACTCCACGCGAGTTACACCCTTCCGGGAAAGTCCTTGAGATGGTCGGTGAGTCGTTGGAGCGTCGTCCAGGACT # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //