Array 1 108266-106770 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYYK01000003.1 Salmonella enterica subsp. enterica serovar Meleagridis strain 98-0244 NODE_3_length_459057_cov_4.2053, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 108265 29 100.0 32 ............................. TTACTTGATGTTGCCATAGAAGAATCTGACCC 108204 29 100.0 32 ............................. ACGGGTATTCCAGATTAATTCCGGTCGGTGTT 108143 29 100.0 32 ............................. TCATCCGTGTTGACAATAATACTGGTTATACC 108082 29 100.0 32 ............................. TACCCGCCTTTTATTTCGCTATATCAAAGGGG 108021 29 100.0 32 ............................. GCCGCGATTTGCTGCGCCTCCGGTACGGCAAC 107960 29 100.0 32 ............................. AAAATCACCAGATCCGGGCGCAAGGGCGCCGC 107899 29 100.0 32 ............................. CCCCACAAATCACTGGTCGATTTCGTCGCACG 107838 29 100.0 32 ............................. TTCTTTACAAAGAAGAGGGCTACCCGGTTGCG 107777 29 100.0 32 ............................. TTGTGACTTTGATAGTGATTGAAAGCACCTGT 107716 29 100.0 32 ............................. TGAGTTGCGCTTCATACGCTCTTTTTGCTCTG 107655 29 100.0 32 ............................. ATGCGTAGTCCAGCAGCTGCGCGGCGGCGTTT 107594 29 100.0 32 ............................. CCCATCCCCAGAATTTACCGATATGCTCCACA 107533 29 100.0 33 ............................. GGCCTAGGTGATCCGTTGGCGTGGAACGTTAGC 107471 29 100.0 32 ............................. CAACTGCGACACATACCTCTCACACCATCACT 107410 29 100.0 32 ............................. AAAAAAGGGAAAAAGGGGGGGCTGTTTCTCCT 107349 29 100.0 32 ............................. CCATCCGAAAAAGCCGCGTTTACGCCGATGTT 107288 29 100.0 32 ............................. GTTTATAAAAAACACTCGCAAACAAGATGATT 107227 29 100.0 32 ............................. CTCTCAAATGCCTGCCACATCACGCGCGACGC 107166 29 100.0 32 ............................. CTGGGAACCCACTTCATCGGAGCGGCTTCACC 107105 29 100.0 33 ............................. CCGTATTGAGGCGCTATTCCGTGCTGTGCCGCC 107043 29 100.0 32 ............................. GCTACTTACAGAGAACTACTGGCAAAAGAAAC 106982 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 106921 29 100.0 32 ............................. TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 106860 29 89.7 32 ............T....C....G...... AACTGGTACACCCGCCTGACGTTTGTTCAGCT 106799 29 100.0 0 ............................. | A [106772] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 126014-124522 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYYK01000003.1 Salmonella enterica subsp. enterica serovar Meleagridis strain 98-0244 NODE_3_length_459057_cov_4.2053, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 126013 29 100.0 32 ............................. CCTGCGTATATCTGGACGGAAACGAACTGGTT 125952 29 100.0 32 ............................. ACACCCCGACTGTAGATGAAATTCCCGTCGTT 125891 29 100.0 32 ............................. CTTACCGCAGAACCGTACATGCGGCTCATTTC 125830 29 100.0 32 ............................. GTAATTCCTCGCCGTAAACGTAACGGAAATAC 125769 29 100.0 32 ............................. ATCAACGATGCCAAACTCGGTGGCGATTGGCA 125708 29 100.0 32 ............................. GCCGCGAAATCGCAGCGCCGCATGACGACTCT 125647 29 100.0 32 ............................. TAATATTCTTATCCAATATTTTATTGCTTGAG 125586 29 100.0 32 ............................. TAGATAGTGAACTTTATGAAGAAGTAATGAAG 125525 29 100.0 32 ............................. GGGATGTCACAATGATAAGGCGTTTTCCGTTA 125464 29 100.0 32 ............................. GCGGATAATTCAACAGCGTTGGGCTATAGCAC 125403 29 100.0 32 ............................. GTTGAAATCTTGGCCGCAGCGGAGGAAATGGG 125342 29 100.0 32 ............................. CGCAATTACACTGACAATTCGTCAGCGCAAAC 125281 29 100.0 32 ............................. AAATTTGGCTTGATGCCGCAAACAAAGAACTT 125220 29 100.0 32 ............................. AACTGCTTAAATCAAAAGGACTTCACTAATGA 125159 29 100.0 32 ............................. CCCGTGTGCCCTTTACCCTTGCCGTAGTCCAA 125098 29 100.0 32 ............................. ACATTGATTGATACGTGTATCAATCGCTGGTC 125037 29 100.0 32 ............................. TCGCGGATTTTCTTAAACGCAGCAATAATATT 124976 29 100.0 32 ............................. AGTTCAGTCCAGTTAACGCTGAACGGCGAACC 124915 29 100.0 32 ............................. ATCGTTGTCGTTCGTGTTGCTGAGGGTGCGAA 124854 29 100.0 32 ............................. GGGCCCCCACGATTTAGCCTTTGACAATTATA 124793 29 100.0 32 ............................. GAAAGCTACGACTTACCAGACTGAAGCCATAA 124732 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 124671 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 124610 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 124549 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTAGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //