Array 1 6469-2918 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOGM010000005.1 Clostridium perfringens strain P7 NODE_5_length_105182_cov_91.3097, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 6468 29 100.0 37 ............................. TACAATAATTGTAAAAATAAAGCAATAAATAATTTCT 6402 29 100.0 36 ............................. TGTAGATGTTAGAAATAAAGTTAGAGAGTTACTTAA 6337 29 100.0 36 ............................. TTAAAGTATAGCTCTACTATTTCTTTAAGCATTAAA 6272 29 100.0 36 ............................. TAATGAAAGGAGTATTTTTATGTCAACATATCATTT 6207 29 100.0 37 ............................. TTAACTACTAAAGAATCATTTATCATTTTTACTAAAT 6141 29 100.0 36 ............................. ATGCTTATTTTTCTGTGGTTGCGATTATATTTATTT 6076 29 100.0 37 ............................. TTTCTAAACTGCCTCTTTCTTCATACCAACATTGGTC 6010 29 100.0 37 ............................. TTGTCATTAGTATTAGAATAAGTACCATTACCATCTC 5944 29 100.0 35 ............................. AAAACTATCATGTTTCCCACAACTAGGGCATACAA 5880 29 100.0 37 ............................. TTCTTAAAGAGTAGTGAATTTCCGCTATTCTTAAACT 5814 29 100.0 35 ............................. ACTCCTAAAACCAAAAGCGTTATTGGGATTAAATT 5750 29 100.0 37 ............................. AATAAACCTCATTATTATCAACTATTAAATCATCTTC 5684 29 100.0 36 ............................. ATAAAAATTAAATATTCCTTTGGAGGCGTTTTATTA 5619 29 100.0 36 ............................. TATATATTTAATAAATTTTGCTTAGATGCATTCTTT 5554 29 100.0 37 ............................. ACGTGTTAAAATAAGAACAAATAAAACGGAATAAAAA 5488 29 100.0 35 ............................. AAAAGTAGAAACTGAATCATTAGATACATTTCCTA 5424 29 100.0 37 ............................. ATATTTTCGATAACTTTTTGTGTTGTATGTCCTGCTA 5358 29 100.0 36 ............................. TTCAAATACCATTACAAAGGCTATAATTAACCTCTG 5293 29 100.0 36 ............................. TTGTTTGTCCTACTTCATTTGCAGTTGCTAAAGATT 5228 29 100.0 36 ............................. AGTATATTGGCAATAGAATTGTTGCAATAGCTAAAT 5163 29 100.0 37 ............................. ATAGTAATTATAAGATTTCTACTTTAACTGCAATAGC 5097 29 100.0 37 ............................. AATTGTGATGTTGGATATTGTCCATATATCCTATATA 5031 29 100.0 36 ............................. AGTATTGACTATAGAGGTCAGCTAGGAATATGCATT 4966 29 100.0 36 ............................. ACACAAAAATATAGCAGTAAGACCACCAAAAAATAT 4901 29 100.0 36 ............................. ATTGTTGAACAATCTCACATAATTTCAATTTCATAA 4836 29 100.0 36 ............................. CGGAATAGCACCAACATCAGAAGGATTACCAACAAC 4771 29 100.0 36 ............................. TTGTTAGTAATTCAAATAATTTGTAGTTTCCTACTA 4706 29 100.0 37 ............................. CAGCATGATTAATTGAAGTTATCTTCTTAATTGCCTC 4640 29 100.0 36 ............................. CTCCAGTAGTTCCTGTTCTAGCGTTTTTTAGTTCCT 4575 29 100.0 37 ............................. TTTTTATTTTTATCTTTACTTTGATTTTTATTGCTGT 4509 29 100.0 36 ............................. AAATGCAGAAGATTTAAGCTCATTGATACAGCATAA 4444 29 100.0 36 ............................. GGGTGGATGCTGAGGCTCTTAGAGTTTCCGAAGAAA 4379 29 100.0 37 ............................. TTTACGCATTGGAAAATGCTTTTAGAAGAATATGATA 4313 29 100.0 36 ............................. TGGATAATTATAATATTTATAAGCAGATGGAAAAGA 4248 29 100.0 36 ............................. GATTCTAATAACATAGCACCCATAAAAAACCTCCTA 4183 29 100.0 37 ............................. CTTTCTAAATAATAAAAGCGCTATTATAAGCGCTTTT 4117 29 100.0 36 ............................. TGGGTACTAACAGGGACATGTGCTGCAAATATAAGA 4052 29 100.0 36 ............................. AGGATTAATCTTTACTCACACCCTTATATTAGAGAG 3987 29 100.0 37 ............................. AAAATCATTATACTATTTTTGAGTAGAGAAAAGGCTA 3921 29 100.0 36 ............................. CTTATAAGCAGAAGAACATTTTTATAATGATACCAA 3856 29 100.0 36 ............................. GATACTAAATTACCTACTCCACTTGCAACAGGGCCA 3791 29 100.0 31 ............................. GATTTACTAGTAATAGAAGGTATTACTCTTG 3731 29 100.0 37 ............................. GTTGATGTAGCTCCTTCTTTAAGAATTGGAGATACAG 3665 29 100.0 36 ............................. TTATTACTTGTTTAACGAGGTGTACACCTTAATTTT 3600 29 100.0 36 ............................. TACCAAGCAAGCCATAAAGAATAATTTACTTCATTA 3535 29 100.0 36 ............................. TGACTAGCATTAGTAATATTTAAGGCTAAGATATTA 3470 29 100.0 36 ............................. ATATTTATTTACTTAACAAATATATATTAGTGCTAC 3405 29 100.0 36 ............................. TTCTGTGGAGAGAAGCTGTAGTGGGGAGATTAGTTA 3340 29 100.0 36 ............................. CCAGCTTCTTTTAACTCAGAATAGCTAGGTTCAACC 3275 29 100.0 36 ............................. AGATTATGCAGCACTTTTTTTGCTTGAATATCGTTT 3210 29 100.0 36 ............................. TAAATTCATCTATAAAAAAGTTGTCTGAAGGAATTA 3145 29 100.0 37 ............................. TTTATTAATTTCTTAACTATATATTACTACAAACGTA 3079 29 100.0 37 ............................. AAATAATTAGCAACTTCATTCTTAAATCTTTTAATAT 3013 29 100.0 37 ............................. TTGCTTTTTAAGACACATTCTAAATATGTGCCTTCAT 2947 29 86.2 0 .................GAA....C.... | C [2920] ========== ====== ====== ====== ============================= ===================================== ================== 55 29 99.7 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACTAAAGAAGATGTATATGATAATTTTATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGGAGATTTTTATTGATACATTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAATAGAGAATGAGTCTATTACTAGCTTTTAGCATTTTAAAATTTGGG # Right flank : ATATAAAAAGCATCTTCAAACTTAAAATCATACTTTTAAACTTATAATTTTTTGTTTCAATAGCAAGTGAACCTAATGAAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAATATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTCATATTTAATACTTCCAATATATATGGTAACATTAAGTTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAGAAAAATAAACAAGATAAGTAATTTAAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGATATCTGTACATTTTTACTTAATTATTGATATATACTTATTAAATTTAGAACTTTGAATCTAATAATCTATGCATTTAGCAGTTTACATCTAATAGCTCCCTTGAAATTTCTTCAAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 46128-45341 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOGM010000005.1 Clostridium perfringens strain P7 NODE_5_length_105182_cov_91.3097, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 46127 37 100.0 38 ..................................... CATTCTTTGCTGTTCTTTTTAATATATCCATATTAAAT 46052 37 100.0 38 ..................................... ACGTATTCATTTATTCTTCTTTTGATTTGGTTTTCTGT 45977 37 100.0 40 ..................................... TCTTTAAGCTTGTAACGGTATTCTCTAAAGATTTTCTTCT 45900 37 100.0 38 ..................................... TCTATATTACTTATACAATATCTTATAACTTATCCCTT 45825 37 100.0 39 ..................................... TTCTTTTTTAATCTTGTACTTAATCTGAACTTAACGTTT 45749 37 100.0 36 ..................................... CCTCTTACAGCAGTTTCTACATTCTTTTCTGTTCTT 45676 37 100.0 38 ..................................... TGTCAATCATTTATTTAATTTATTTCAACATTTTTTTA 45601 37 100.0 38 ..................................... GCTATCAACTCTTAATACTGAGTCTAATTTACCACTAG 45526 37 100.0 37 ..................................... TAACTTCTTGAATCTTTTGTGTTTTCTCTTCGTAAGA 45452 37 100.0 38 ..................................... TGTTAATCCTTTAATGTTTTCCACTTTTAACTTCTCCT 45377 37 94.6 0 ..................................T.T | ========== ====== ====== ====== ===================================== ======================================== ================== 11 37 99.5 38 GTAGAAACCTACAATAATCCTCTAAGGATATTTTCAC # Left flank : AAATACGGAAGAGAATCTTTAGCTTTAGATGTAATAGAAGAAATTAGAGCCTCTTGTGATAGAATTATTATTAAGTGGGTTAATAGAGGCGAATTTAGAAAAGTTGATTTTTTAAAATCAGAAGATGGAATTGTTCTTTCAGAAAAATCTTTTAGAAAGTATATAGAAAAATATTCTAAGGAATATAGTAATAGTATAGAAAGCGAAATAAATGTAGCTATAAAAGAATTTAGAAAGATATTACTTGATAAATAAATTAAAAATAATAAAAAATATCTAGTAATAATATTGAAAATATGATATAATAAGTAAAGTAAAAAATACCCCATTAAGGGTTTGGTAAATCAAATAGTTCGTTGATATAACTAGCTTTTAAGTATATTTTAGCTTTTTAGAATTAATGCAAAAAGGTTAAAATATTTAAAATTTTTCAAAAACAGAATAGGTTTCAAAAAACAAAAGCTACAGAGTAGATAAATAGATATTTAACAATATATAGG # Right flank : TTTAAAACCTAGCTTTTGGTGGGTTTATTTTTTTGCCTTTATTTTTTGAAAAATAAGGGTTTTTTATATTTTGTAGAATTAATTCATAAGAAATGACAGGAAAAACAAGGAGTGAATTAATATGTTAAAAAACTTAACACCAAAAGGAAAGCAATTTGAAATAATGGATTTAGAGATGAAAGGACATAATGTTGTTACAGGATCAGCAGGTGCTGGTAAGAGTGTATGTGCTTTATGGAGAGCTAAGGCTATTGTTAATAGATTAGAAGAAGATGTATGTATTTTAACTTATAATAATACACTTAAAAATTATTTGACTAATGTAATAGGAGATGAAAGTGGAAAGATTGATATAACTACATTCCATAAAATTGCAACAGCTTATTTAAGAGAGATTGGAGAACTTGGATATAATGAGGTTTTGGATAAAGGAAAACCAAAACTTATAAAAAGTGCTATTGAAGAGGTTAAGAAAACTTATGGATATAATTCAACTCTTT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAAACCTACAATAATCCTCTAAGGATATTTTCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 51507-50860 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOGM010000005.1 Clostridium perfringens strain P7 NODE_5_length_105182_cov_91.3097, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 51506 37 100.0 40 ..................................... CACATAATAAATAACCCTTCTTAGGTTTTTCATTATGTAA 51429 37 100.0 41 ..................................... TCAATGTAGTAACCTAATTTTTCATCATACATTATTGAACG 51351 37 100.0 40 ..................................... CTTAGCAAATCCTTTTAATACTTTTTGGACTTTAACTGTG 51274 37 100.0 38 ..................................... AATACATTTAAGAATGATAAGTATAATTGTTTCATAGC 51199 37 100.0 39 ..................................... TAGCAACATTTATTAAATACTCAGATACATTTATATCAT 51123 37 100.0 38 ..................................... AAGTTTTCAATTAATTTATGAGCCATGATATTAACTAA 51048 37 100.0 38 ..................................... CTATATACTTATCTAATTTTTCTTTCATGTTTATCTGG 50973 37 100.0 39 ..................................... ATACTTTTCCCTTGTAGATCTCTAGCCATCATTCTGAAC 50897 37 97.3 0 ......................C.............. | T [50863] ========== ====== ====== ====== ===================================== ========================================= ================== 9 37 99.7 39 GTAGAAACCTATAATAATCCTCTAAGGATATTTTCAC # Left flank : AAAAACAAATATAAAGTAAGTTTAGATAAAGATATTTCAGTAAAAGAACTTATTACTATAAAAACAACTTTACTAGAAGAAAAAGATTATAATGAAGGTAGATATATGAATTTAGGAAAAGAATTTGCACAAAAGTTACCTTTATTAAGCATAGAAAATCAAATCAAATTAATAAAAAAATAGAAATTTTGTAAAATTAAGAAGTTATATATAAAATTTAATATAAATATATCTTTATATTATATATATAACTTCTTATGAATATAAATAAAAAATAGTAGAAAAAAATAAGGTTATATGTTATAATGAATCATAACAAGGATCCCTCTTAAGGGTTTGAAAAATCAAATAAAACCTTGAAATAACAAGCTTTTATATATGTTTTACTTAGATTAAAATATTTTGTTTTAGGTAATTTTACTAAAAAAATTAAAAAATCAAAAAGGTTTCTAAAATCAAAAGCTAGGTAGTCGATAAATAGGACCTTAAACAAAGATAGG # Right flank : ACATTATAGATTTTATGGAGTCCTAATCTATATTAGAAATTAGCAAAATTGATGATTTATTTAAGTAAAGTATTTTATATATAATATTTATGTTTTAGGCACGATAAAGTTATAAAAATGGAGATTATAAATGATAAGTATAAAGTTAACAGTAAATATTTTAGTTTGTATAATTGTTATATCTTGCAATTTTATTTTAACCTGTAAATCACATATAGACGATGAATTAATCAAACAGGAAAAAGATGAGAAGTTAGAAGCAGCTTTATTATATAGTAATAGATATTTAAGAATATCATATTTAATATTTTCTATATTAATAGGTTTATTATCTATCATATTAATTTATATTAAGTTAAATTATATTTTAATTATTGGAGAATTATTTTGTATATATTATTCTTTTAATAAATTATTAAGTTTACTTAGATTAAGAACTACTGCAACAGATTCTGAAAAAAATTTAATATTATATTGGACATTTAATATTATTGATGAAG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAAACCTATAATAATCCTCTAAGGATATTTTCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //