Array 1 15460-15248 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLJS01000118.1 Pseudoxanthomonas taiwanensis J19 PseJ19_scaffold_83, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15459 29 100.0 32 ............................. GATTACCGGCATCCGCCGGCGGGGTGTTCGCG 15398 29 100.0 32 ............................. CCGCGCCGTCAGCAGCTCCCGCCCGAGCACTG 15337 29 100.0 32 ............................. CTGGACCAGACCGTGCCCGGACCCTACAGCAT 15276 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCGCGCACGCGGGGATGACCCG # Left flank : ACTC # Right flank : GCAGCTAATAACGTTGCTGCGATGACCCGCGCCGCTCTGATGTTGTGCTGTGCGTTGAGTACGTTCCCCGAAAACAAGGGGATAATGACCGCCCGCAATCCGGGGGGGAAGGATGCCTCTTGAGGCCTCGCTTGCGCACCGGATGACTTGCCAGCTCCCGCGGCGATGGTTCCCCCACGCATGGCTCCCCAGGGCTTCTACTTGCCCCTTGAGCCGTCGAAAGCCACGGGTCGGTTGATGTCGGCTCGCGCCAGTACACATACAATTGCGCGATGAATACCCCCTACCCCACCGTGCGGCTGAAGAACGCGTGGCGTTCCAGCCATCCCTGGATCTTCCAGAAGCTCGTCGAGAAGCCGGCCCAGCGGCCGCGCCCGGGCGAGATCGTCGACGCCTACGACGTGGACGGACAGTTCATCGGCTGCGGCTTCTACAACGGCCACTCGCGCATCGCCCTGCGCATCCTGGAGACCGACCCGGCGGTGGCGGTGGACGCGGAC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCACGCGGGGATGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCACGCGGGGATGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 521-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLJS01000063.1 Pseudoxanthomonas taiwanensis J19 PseJ19_scaffold_33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 520 29 100.0 32 ............................. TACGCGCCGCAGGTGGCCGCCGCCGAGGCCGA 459 29 100.0 33 ............................. CCTGACCAGGTGATACAGCCGTGGCAGTTCGGC 397 29 100.0 32 ............................. GGCTTCCGCACGCATGGCGTGGGTGGCCTTAA 336 29 100.0 32 ............................. TCCGGCCGGTGCACGATGCGCGAGTCCAGGCC 275 29 100.0 32 ............................. GCTGGATCTGGCTAGCGGCCTGGTTGGTCGCG 214 29 100.0 32 ............................. ATCGCTGCTAGGGATGGCACTGGCGGCGGGAA 153 29 100.0 33 ............................. CGCAGTCTGGCCAAAGCCACCAAGGACCTCGAA 91 29 100.0 32 ............................. TCGATCCACTCGGCCCGTCGTCGCGTGGATCG 30 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 9 29 100.0 32 GTGTTCCCCGCGCACGCGGGGATGACCCG # Left flank : ATTCAGTTTGGTAGGATTGCGGCCGCCGAATTTTCTTCGGTGCATCAGTTATTTGCGTGAAGTGTGTTCCCCGCGCACGCGGGGATGACCCAACCGCCGAAGCAGTGGCCGCGCAGATTCGCGCGTGTTCCCCGCGCACGCGGGGATGACCCGCACATGGTCCTGCCGCTGGAAATCCTGACGAAGTGTTCCCCGCGCACGCGGGGATGACCCGCTTCACGCCGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCACGCGGGGATGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCACGCGGGGATGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 958-807 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLJS01000063.1 Pseudoxanthomonas taiwanensis J19 PseJ19_scaffold_33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 957 29 96.6 32 ............................A ACCGCCGAAGCAGTGGCCGCGCAGATTCGCGC 896 29 100.0 32 ............................. CACATGGTCCTGCCGCTGGAAATCCTGACGAA 835 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTGTTCCCCGCGCACGCGGGGATGACCCG # Left flank : GCGCATCATTCCGACCATCGAGGAGGTGTTGGCGGCGGGGGGTATCCAGCCGCCTGAAGCCCCGGTGGAGTCGGTGCCACCGGCCATCCCCAATCCGGAGGGAATCGGGGATATCGGCCATCGGGTGCAGGGATGAGCTTCCTGGTCGTCGTCACGGAAAACGTCCCGCCCCGCCTGCGTGGCAGGTTGGCCTTGTGGCTCCTGGAGGTGCGGGCGGGCGTATACATCGGCGATGTGTCGCGTCGCACCCGGGAGATGATCTGGCAACAGCTGTCCGAGGGCTGCGAGGACGGGAACGTCGTCATGGCTTGGGCCAGCCGCCACGAATCGGGCTACGAGTTCCAGACACTTGGCCCGAACCGGCGTGTTCCCGTGGAGTTCGACGGCCTGCGACTGGTGGCTTTCCATCCGCCGCCGGAACACGCCGCTCTTTGACAATTCAGTTTGGTAGGATTGCGGCCGCCGAATTTTCTTCGGTGCATCAGTTATTTGCGTGAAGT # Right flank : CTTCACGCCGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTTCCCCGCGCACGCGGGGATGACCCGTACGCGCCGCAGGTGGCCGCCGCCGAGGCCGAGTGTTCCCCGCGCACGCGGGGATGACCCGCCTGACCAGGTGATACAGCCGTGGCAGTTCGGCGTGTTCCCCGCGCACGCGGGGATGACCCGGGCTTCCGCACGCATGGCGTGGGTGGCCTTAAGTGTTCCCCGCGCACGCGGGGATGACCCGT # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCACGCGGGGATGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCACGCGGGGATGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [6.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //