Array 1 236866-234543 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDDS01000004.1 Pseudoalteromonas neustonica strain PAMC 28425, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =========================================================================================================== ================== 236865 28 100.0 32 ............................ GTAAGGTAAACCTAAAGAAACAGGGAGACCAT 236805 28 100.0 32 ............................ TTCTTCCAGTTTTCTACAATACCACCTATAAA 236745 28 100.0 32 ............................ ATGATACTGTTTACCATCCTCAGCATCTTTGA 236685 28 100.0 32 ............................ ATCAGAGCATTTACAGCGGCGCCGTTTGCTGC 236625 28 100.0 32 ............................ ACTGGGAATATAATCTCATTGTAAATCTCCAT 236565 28 100.0 32 ............................ ATTTTTGCCAGTTATCATTACACCTACATTAG 236505 28 100.0 32 ............................ ATATATTTCGCACGAACTACCTGAAGCGAATG 236445 28 100.0 32 ............................ AGTTTAGAGCGGACGTGGCGGCTAATCTTGTT 236385 28 100.0 32 ............................ TAATGCAAGTAATCAGCTTTTAATAAGTGGAG 236325 28 100.0 32 ............................ TCATGTACGATTATCGCCTTCTTCCAGTTTTC 236265 28 100.0 32 ............................ CGCTTTAGCTCGCGCAACGCAAGCAAGAATGG 236205 28 100.0 32 ............................ TTTGGCGCACCTTCTGCGACTGAATTAAATTC 236145 28 100.0 32 ............................ TCTGATTAATATATTTTTATGCGCTAACTAAA 236085 28 100.0 32 ............................ TTCAGTATGAAATAAAACATAACAATCACCCG 236025 28 100.0 32 ............................ TTATACAAAAACATTTACAGATTTTCTTGTCA 235965 28 100.0 32 ............................ TATGCCTATTTAGGCTAGGAAATGGTCGGTTC 235905 28 100.0 32 ............................ TTCTAGCACAATGCGCCATTTAGGGTGCACAA 235845 28 100.0 32 ............................ ATAATTATAGAGGACTACGCTGAGTTTGATTA 235785 28 100.0 32 ............................ TAGCAGTAGCTTTGCGCGTGACTCGGTTTATA 235725 28 100.0 32 ............................ TAGAAGGTTTAATGGTTGGTACTGGCATTACG 235665 28 100.0 32 ............................ GCACAGGCATGAGCTTAAGCAGTCTTAGCAAG 235605 28 100.0 32 ............................ GAAAATGTCAGTCATCTGCTTATTGATTGCGC 235545 28 100.0 32 ............................ AGTAACGAAAATATCAGTTGCACCATAGGGTA 235485 28 100.0 32 ............................ CCGTTCTTGTATTACGGGGTATAACTCCCATC 235425 28 100.0 32 ............................ TTGTTAGTTAATAAAACCTAAATTAAATTGCC 235365 28 100.0 32 ............................ TTGCTGCGACCATCCATACACACCACTAAAGT 235305 28 100.0 32 ............................ TTAAGAAAAAAGGGGCGGTTTTACCCGCCGTT 235245 28 100.0 32 ............................ GCATGAATATTACCAAGTAGATATGTGTAATC 235185 28 100.0 32 ............................ GCATTGACTATTACACGCGGCGTGTCATACCA 235125 28 100.0 32 ............................ GCTAAAGAGCGCCATTTGTGCCGCAGCAGAGC 235065 28 100.0 32 ............................ GCTTGGCTTACAACGTCCGCTTGGCTTACTTT 235005 28 100.0 32 ............................ TTATCCATTGACGTTGTTTTAATGGTTGCGAG 234945 28 100.0 32 ............................ TGAAAATTATAATGCTAAAGATGGTATTAAGA 234885 28 89.3 107 .........................GTG ACGATGGACCGAAACGAAGTTTCGCAGCCTGAGGAAGTGAGGTCATGGATGACCGATGTAACCAAGCTCCATGGATGGATTTACACGCTAATGTTGGTTCAACGTTA 234750 28 100.0 32 ............................ GAGCATGAATGATTATTTGTCATCGCTCGAAA 234690 28 89.3 32 .........AG.A............... GTAATGTGTTAATCGTAGGCGCGTCAGGTAGC 234630 28 92.9 32 ..........G.A............... ACATACGCATCGACCCCGCAGCGATGTCACAC 234570 28 85.7 0 ............A............GTG | ========== ====== ====== ====== ============================ =========================================================================================================== ================== 38 28 98.9 34 GTTCACTGCCACGCAGGCAGCTTAGAAA # Left flank : ATTAAGTCAGTTAAACCAGTACCAGAAAATGTGACCTATGCGGCTTTTGTTAGACAGCATGTAAAAGGTGAGGCGCGTATAGAAAAAGATATGTTAAGTAAAGCACAACGTTGGGCTGAAAAATCAGGTCAACCGCTTGATACTTGTTTAGCAGAGCTTGAAAAGACTAAACCCAAAGCCGTTAACTCATTACCTTTTATTTGGTTAGAAAGCCAAGAAACAAAACAACGTGATGCAGCTAACAGTAGAAAATTTCCACTATTTATCAAAAAGGTAGAAATTGGGAAAAAACAAACAGGCATATTTAATTGTTATGGTTTAAGTGTAAATCACAGCAATAAAGAAAAGCTGGCTAGTATTCCCCAGTTTTAACCTTTATTTTTGCTCTTTAAAAATTAGAAACTAAAACAATAAGTTACAACAGCGCTAAAAAATTAGGTAAAAATAGATAATTTTACCTAATTGCCTGTTGTAACTTATTTTTTGCCTGATATTCTATT # Right flank : ACGATGGACCGAAACGATTTACCGAATAAACAGTGCAGCCTGAGGAAATGAGGTCATGGATGACCGATGTAACCAAGCTCCATGGATGGATTATAAATCGCTAGCTTAGCGTGATCATTTGGGGTTTCTCGCGCTAAAGCACGACCTACGGTACTGGTAGGTGATGAGTGACCGGTGTAACCAAGCTCCATGGATGGGTTATAAATCGCTAGCTTAGCGTGATCATTCGGGGTTTCTCGCGCTAAAGCACGACCTACGGTACTGGTATTTAGGTGATGAGTGATCGATGTAACCAAGCCCTTGGATGGATTGTAAATCGTTAGCTTAGCGTGATTATTCGGGGTTTCTCGCGCTAAAGCACGACCTACGGTACTGGTATTTAGGTGATGAGTGATCGATGTAACCAAGCCCTTGGATGGATTGTAAATCGCTAGCTTAGCGTGATTATTTGGGGTTTCTCGTGCTAAAGCACGACCTACGGTACTGGTATTTAGGTGATG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCACGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCACGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //