Array 1 53360-53999 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMAL01000041.1 Escherichia coli strain MOD1-EC6263 MOD1-EC6263_41_length_119184_cov_69, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 53360 29 100.0 33 ............................. GGACCGACCAGTGGCGGCGGGGTAAATAAATGA 53422 29 100.0 32 ............................. TCTTTCTGCTCTATCCCTGAAGAGCGTACGTC 53483 29 100.0 32 ............................. CCGTCAGTAAACCCGCTGGCGGGTACTGGATA 53544 29 100.0 32 ............................. TAAAAATTAGGCTTCCACGCCTCAACGCCAGT 53605 29 100.0 32 ............................. CCCTCCAGGCTATCGCAGCACTGGTCCCGTTT 53666 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 53727 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 53788 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 53849 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 53910 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 53971 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 11 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 79703-81013 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMAL01000041.1 Escherichia coli strain MOD1-EC6263 MOD1-EC6263_41_length_119184_cov_69, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 79703 29 100.0 32 ............................. GCAAAACCCTCGACTGGACAAATACCGGCGCG 79764 29 100.0 32 ............................. GTCTGTTATGCGAATATTTTTATTCTACTTTA 79825 29 100.0 32 ............................. GTTTTTACTCTCTGCCGCTGAGCGTCACACGG 79886 29 100.0 32 ............................. GACTGCATATGAGCACGAGACACCCGGTAATT 79947 29 100.0 32 ............................. AACGTCAGGTTGTCGCCGCTCTGCGTGGTCGC 80008 29 100.0 32 ............................. TTCCAGCATTTACGCGGGGGTGTGCGAATGAT 80069 29 100.0 32 ............................. CCGGTCGCGCTATTGAGCCGTTCTTTTCACAG 80130 29 100.0 32 ............................. ACCATAAACATTATCCCCCGGCAAATTACCGC 80191 29 100.0 32 ............................. TCGATGCCGAACACGCTAAATATCTCGCAAGT 80252 29 100.0 32 ............................. GTGCGTTGTTGACGGTCTGACCTTCCCGCTCC 80313 29 100.0 33 ............................. GCCTGATTCCCGTATTTGTGAGAGTAATAACGC 80375 29 100.0 32 ............................. CTATTCCCCTGACCGGACATACCCTGGACAAT 80436 29 100.0 32 ............................. GGCGTCAAACTCTTTGTCACTCATACCAAAGA 80497 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 80558 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 80619 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 80680 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 80741 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 80802 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 80863 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 80924 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 80985 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 22 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //