Array 1 53616-52064 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029684.2 Oenococcus sicerae strain UCMA15228 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 53615 36 100.0 30 .................................... CCAATTGTCCGTAAACGTAGTCGTCTTTCA 53549 36 100.0 30 .................................... ATTGCTAATATCAATAAAGCAATTAGTTGG 53483 36 100.0 30 .................................... TTGTGACTTGTATACCAACAGCGTCAGATA 53417 36 100.0 30 .................................... TTTATATAGTGATTTAATAGATGATATGAA 53351 36 100.0 29 .................................... CTCTTGGGCTTGCTCTTCGTTGATTCCAT 53286 36 100.0 30 .................................... GTTGGCTTGCAAGTTACCAATAGCTCCCTC 53220 36 100.0 30 .................................... TGTCAATTCTGCGATGGCTTCGTTTGAAAT 53154 36 100.0 30 .................................... CGCAAGTGTGATAGAGAAGCTCGGATATTC 53088 36 100.0 30 .................................... CTAAGGCAGCCAACAAGTTATCGTAACCAT 53022 36 100.0 30 .................................... TGATACGCCAGCGTGCATTTTCGACGTCCA 52956 36 100.0 30 .................................... TTACAAAAAAGATTTAGCAAGTCCGAGTTC 52890 36 100.0 31 .................................... CAAGAAAAGCTAAAAAGGAGTCACAGAATGG 52823 36 100.0 30 .................................... AGTGTAAGGGGTTTTCATGTTTTCATTGAT 52757 36 100.0 30 .................................... ATGACAGAGCGGTATAAGCTCGCTGATACT 52691 36 100.0 30 .................................... AACACCAGCGAGGTGGAGCGCATCAATCGC 52625 36 100.0 30 .................................... AACTAAATATTCCCGCAGCTGGTATTATTA 52559 36 100.0 30 .................................... TGCCACTGGCTTCAATACGACTTAGACCGC 52493 36 100.0 30 .................................... TGCCACTGGCTTCAATACGACTTAGACCGC 52427 36 100.0 30 .................................... CGAACCAGACTTTGATGAAGACACCGATAC 52361 36 100.0 30 .................................... GTGATTTCTTGCCGATTGTCTTCGCAGTCC 52295 36 100.0 30 .................................... GAATTAAACTGATCGCAGTCTTTGAACCGC 52229 36 100.0 30 .................................... GAATTAAACTGATCGCAGTCTTTGAACCGC 52163 36 100.0 30 .................................... CTTTGTGATTATATAAATTCCAAAATTTCT 52097 34 91.7 0 ..........................C.--...... | ========== ====== ====== ====== ==================================== =============================== ================== 24 36 99.7 30 GCTTCAGTTGTATGTCAGATTAATGGGGTGACACCC # Left flank : GGTGGCTTTGAAGCCAACTCTTTTTTTGCTAAAAAAATTCAATCTTTGTTTTTGAGCTACTTAAGTGATGAAACTACCAAACAATTATTTGATCTAGATCGACAGATCAAACAGCAACTTAATAAAATAATTTTTAGTAATGATCTACCCATTAAAATTTCTGATGAATGGTCGACGGCGATGCTGGTTAAAAGTCAAAATTTATCTTTGGATACGGGAGAAGCAAGCTCCGCCTATGATAAAATCGATGACATAGTAAACGTTATGAGTGAATTACACGATACACGCTTATTAGTTTTGACAAATTTACATCTTTATTTAAAAAAAGAACAGATTGACTATCTGTCAACTTTTTTAAATGCAAAAGGGGTGAAAGTTCTTTCTGTAGAACTTTCAGAAGAAAGAGTCCTGTTATCTGATGAATCTAGCAAGTCATACTTTATTGATAAAGATTTCGTACAGTTTTAAACCTATTGTGCTTGAGTACGAACATGTGGTCT # Right flank : CCCGATTGAATGACCCCAGAGCTATATTTGGATGCTTGCTATACTTTTGATAGCATTAAATTTATTTTTTATTATCACTAATTCAGCCAACAATTGCACGTTTTGCATAATGAGCGGTGCATAAGGACTTTGCTAAGCAAGGAATATATCTAACTCTCACTAACCAAAATGGATTAATAATGATGACAGTTAAAATGAAATCAATTTAAAAAAGACCAATCAAGGTCTTTTTTATGAAACATCCATGCCACTCTTAGCAATGCGGCAATTAGATGTTCCTTATTGTTCTTAGCTAGATCCATTTAATTGTTCTGAAATAGCAATAGTCACTGACTGGTTAAGCCAAAACATCTAAGATGACTTGTTTGACTTGAATAAAGGTCGGGGTGGCTAACAAATCAACTTTAACCGCTTGACGTTGACGAAAGTCAAAAGTGAAAAACTGGAAGGGATTGATATAACCGTCCACTCGATCTGTGTTGACCAAAACGAAATATTCA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAGTTGTATGTCAGATTAATGGGGTGACACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 1640492-1634238 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029684.2 Oenococcus sicerae strain UCMA15228 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1640491 28 100.0 34 ............................ TGGGAAGGCTTGGGTTTTATGGCCCAAGGCTTTG 1640429 28 100.0 33 ............................ TTGTGTGCTGTACAATGAATCACATAACAGGAT 1640368 28 100.0 33 ............................ TGGTACCGGCACGGCAAGTATTGCCACGCCAAC 1640307 28 100.0 33 ............................ TCTAAGCCAACACAAGCCATTGCAGCAAATCAA 1640246 28 100.0 33 ............................ TGCTGCGACGACAGTGATTAGTGGAACTTCTTG 1640185 28 100.0 33 ............................ TATCGGGAATTGTTTGGGCTGACTGATAAAAAA 1640124 28 100.0 33 ............................ TATATATTGACGGGGAAAAGATAAAATAGGGCT 1640063 28 100.0 33 ............................ TATAACAAGCGATACACGGTCGAAATGACTGAG 1640002 28 100.0 33 ............................ TATCAGTACGCCCATAGACAAGCCCAAAACAAA 1639941 28 100.0 33 ............................ TCGTGATGGCTGGCGAACCGGAAATACGTGCTT 1639880 28 100.0 33 ............................ TATCTGTGGCAGGGTTAACGTTCCCTTTTTGAA 1639819 28 100.0 33 ............................ TATCTAGTTTGGCATTGTCAGCGTCTTGTTGAA 1639758 28 100.0 33 ............................ TTACTACTCCATTAAGTGTTAATTTAACCGTTC 1639697 28 100.0 33 ............................ CGGTAATTCTGACTTAGTTATCAGAACTAGAAA 1639636 28 100.0 33 ............................ CAAGGATCTTTTGTTGTCGATTTGTTGCTAGTC 1639575 28 100.0 33 ............................ TAAAGTTGAGAGCTCGACTTATCAAACGATGGT 1639514 28 100.0 33 ............................ TGTTCACCATCGGAGTCCCTCGTCCTAATAAAT 1639453 28 100.0 33 ............................ TATTTCGCAGTTCATTTCGACGAACTGGGCTGA 1639392 28 100.0 33 ............................ TGACAGTTTTTCTTTGAAACTGGACAGGAAACC 1639331 28 100.0 33 ............................ TTAAACAAATAACTTTTCATGGCTTGAGGCACA 1639270 28 100.0 33 ............................ TCGGCGGTTACAGCGGGAGCGTCGACTCTGATA 1639209 28 100.0 33 ............................ TCAAACTGAATATGACCGTATTCATCGAGACAA 1639148 28 100.0 33 ............................ TGCCAGTGTCAATAGTGGTGTTTCGTCTAGCTT 1639087 28 100.0 33 ............................ TTAAAGAGGTACAAAAATGACAAATAAAATTAG 1639026 28 100.0 33 ............................ TAACAGGCCACCGATTAATTCTGTTAGGTTGTT 1638965 28 100.0 33 ............................ TAGCAACACTTTTCAGATTTATTCCCCATGGGA 1638904 28 100.0 33 ............................ TGTTTGATAACTAGAAATAGAATCTAATTGTAG 1638843 28 100.0 33 ............................ TTCAACTAAAGTCCCAATTAGTCAAACTAACGG 1638782 28 100.0 33 ............................ TACCCTTTACCTGCTGATTGCTCCAAGATTGCA 1638721 28 100.0 33 ............................ TGCCCAGATTCGCAAAAAGTTTTTTGGTCATTT 1638660 28 100.0 33 ............................ TGATTTTCCGTACATTTGCTGCAGCAGCTCACG 1638599 28 100.0 33 ............................ TCGAAGCAGCCCAGCGGAAAGCAAAAGCTGAGG 1638538 28 100.0 33 ............................ TTAGCAGCACAAAAGCTGTTCCTTGAAGTAACC 1638477 28 100.0 33 ............................ TCTCCCAAGGATCTATTTTTAGTGCCGCTGCTA 1638416 28 100.0 33 ............................ TAATGCTTCAATCAATGAAATCATTGACGTAAT 1638355 28 100.0 33 ............................ CTGCTGAATCTGGCGCAAAAATTATTAATTTTT 1638294 28 100.0 33 ............................ TTATCAGATTGCACCTTTGTCTCGAGAAGCTGA 1638233 28 100.0 33 ............................ TATCAGACCGCACATGGTCGGTGCTGTGAATTT 1638172 28 100.0 33 ............................ TCATCAAAAAACATCTCCGACCAGTGCATGTCA 1638111 28 100.0 33 ............................ TAATGTTCATAGCGTCAGAAACGCCCACCTGAT 1638050 28 100.0 33 ............................ TAATCGTTGACTGATAGAGCGGAATCGTACCGT 1637989 28 100.0 33 ............................ TCTCTTCAAAATTTTATGTAGGGCCGTCTCAAT 1637928 28 100.0 33 ............................ TTTATCAAAATATTGTCCCAAAGCCTCTTGCAA 1637867 28 100.0 33 ............................ TGGCAAACTCTGTCAAGCCTTCGTCGTGAGCTA 1637806 28 100.0 33 ............................ TAAGCCAGTCCTTGTTAGCCATCACAAAGCTGA 1637745 28 100.0 33 ............................ TTGTAACTTCTGATAAGGCTTCATTAACACGAT 1637684 28 100.0 33 ............................ TAATCGTTGACTGATAGAGCGGAATCGTACCGT 1637623 28 100.0 33 ............................ TCTCTTCAAAATTTTATGTAGGGCCGTCTCAAT 1637562 28 100.0 33 ............................ CTGCTGAATCTGGCGCAAAAATTATTAATTTTT 1637501 28 100.0 33 ............................ TTATCAGATTGCACCTTTGTCTCGAGAAGCTGA 1637440 28 100.0 33 ............................ TATCAGACCGCACATGGTCGGTGCTGTGAATTT 1637379 28 100.0 33 ............................ TCATCAAAAAACATCTCCGACCAGTGCATGTCA 1637318 28 100.0 33 ............................ TAATGTTCATAGCGTCAGAAACGCCCACCTGAT 1637257 28 100.0 33 ............................ TAATCGTTGACTGATAGAGCGGAATCGTACCGT 1637196 28 100.0 33 ............................ TTGGTATAGGTCTGGTTCTCTGGAAAATTCCTG 1637135 28 100.0 33 ............................ CTGCCACTAAACATAACTAACTTATCAAACTTG 1637074 28 100.0 33 ............................ TAAGGCAGCTGCATAAGAATCATGCAACGGATC 1637013 28 100.0 33 ............................ TATGGCAAAGATTCTGGTTCATAACCTGAATTC 1636952 28 100.0 33 ............................ TGGGCTTCCCACCCATTCGTATGGTTAGGCCAT 1636891 28 100.0 33 ............................ TCTGCTTTTAGAATGTTATATTTACGTTTTAAT 1636830 28 100.0 33 ............................ TAACCAAAATTGAACGGGAAGATCCTGATGATG 1636769 28 100.0 33 ............................ TGGCTATATGTGCTATTCATAGCCAACGTGCAA 1636708 28 96.4 33 ........T................... CAAATGTAGCTTCGCCCTGTGAGTAACCATTAA 1636647 28 100.0 33 ............................ TTAAGGGACCAAATTGTAAGCTTGTTAGATGAC 1636586 28 100.0 33 ............................ TTGATACGACGATTAAAACTAATTTTTTGAATC 1636525 28 100.0 33 ............................ TGATTGAATCTGTGCTGAATTGTCCATGACTAC 1636464 28 100.0 33 ............................ TACGAACTATCTCAATGCCAGACAGCTGGTGGG 1636403 28 100.0 33 ............................ TGGAGCAAGCAATGGCAGAAACGGCAGGAAAAG 1636342 28 100.0 33 ............................ TAGCAACACTTTTCAGGCCTGAACCCCATGGGA 1636281 28 100.0 33 ............................ TTCCTGATCGTATGTTGGCGATAATGTGACCGT 1636220 28 100.0 33 ............................ TCCGTCATCATCAGCATGCATATTTAAATGAAA 1636159 28 100.0 33 ............................ TCATTTTTTTCCTCCTCGATGATTTGCAAATCA 1636098 28 100.0 33 ............................ TGAGTCATTGCCATAGCTTGAATCAAGCACATT 1636037 28 100.0 33 ............................ TATAATTTTGGTATTTTTCGGTTAGGCTTTCTT 1635976 28 100.0 33 ............................ CAGCCAGTCTTCAGTAACCGCTGTCAAAGGTGG 1635915 28 100.0 33 ............................ TGAAAATTCATGAATTGAAAATATTGCCGAAAT 1635854 28 100.0 33 ............................ CGCTTAAGCGCAGATTTTTGGCTGCATCAACCA 1635793 28 100.0 33 ............................ TAGCAAGTACGCCGTTAAAACCTTAAAAGGCGA 1635732 28 100.0 33 ............................ TACGGCCGTGGCCACAACGATAATACCGTTCCA 1635671 28 100.0 33 ............................ TCAATAATTCATAGTTCTGGTCATTGTCGTGTA 1635610 28 100.0 33 ............................ TCGCTTAGAACGGCAAAACTTCATCTGATGGAA 1635549 28 100.0 33 ............................ TACGTTTAAACTTGCAATACTGATATTTATGTA 1635488 28 100.0 33 ............................ TCATGATAACTTCAAAGTTTCCTTAACCTCTGC 1635427 28 100.0 33 ............................ TGGTGGGAGGGTCAACCGCAAGCGCAAAAAGAG 1635366 28 100.0 33 ............................ TGGACAAATGGAAAATTAGGGCTGTTTGATGAA 1635305 28 100.0 33 ............................ GGTAAAGTCATGACGAAAGCCATGAGCAGCACA 1635244 28 100.0 33 ............................ TAGTCCAATCAACGTATTTTTCATCAACGTTGT 1635183 28 100.0 33 ............................ TTTTATCACTTAGATCATCTGGTAAATCAGCGG 1635122 28 100.0 33 ............................ TAGAAAAAGCCCAGGCAGATGCCAAAATAGCCA 1635061 28 100.0 33 ............................ TGTGGCCGAAAGTTAAGATAAACATGAAAGGGT 1635000 28 100.0 33 ............................ TATTCCATCATTCACGCCTCGAGAAGCATTTTG 1634939 28 100.0 33 ............................ TGCCCGCCTGCATAATGAAGAGGGTGCTTATAA 1634878 28 100.0 33 ............................ GTCGCTCCAATGTTCCTGCTGGCATACTTAAAA 1634817 28 100.0 33 ............................ TTGCAAGTTGATTGCTCGACGCATATTACGATT 1634756 28 100.0 33 ............................ TGGACAAATGGAAAATTAGGGCTGTTTGATGAA 1634695 28 100.0 34 ............................ TGGTAAAGTCATGACGAAAGCCATGAGCAGCACA 1634633 28 100.0 33 ............................ TGGTAGAAAATTGGGTAAACGGTTTGAAAAGCA 1634572 28 100.0 33 ............................ TAGTCGGATCATGCCGAACGACAATGTCAATCG 1634511 28 100.0 33 ............................ TCCAATTAAAAATATCGATGACGAAATCAAAAA 1634450 28 100.0 33 ............................ TAAAATAAACGAAACGGCGAACGAACTCGGTGC 1634389 28 100.0 33 ............................ TACAACGGCCATCATCTTTGCCTTGAAAAATAA 1634328 28 100.0 33 ............................ TATAACATTGCTTTCTTTGTCATTGGTTATAAG GG [1634305] 1634265 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 103 28 100.0 33 GTATTCCCCGCACAAGCGGGGGTGATCC # Left flank : ATGAAGGACAACATTATTTCAATTGGTGCGGTTAAACAATATGCTGATGGCCAGACTGAATGCTTTTCGACATTCATTCAAATTGACAAAAAGATTCCTGAAAAGATCGTCAATTTAACTGGTATCACTGATGAAATGTTATCTGAAAAAGCAACCACACTAGTGAATGCTTTAGACGAATTAAAACAATTTATTGGCTCTTCTCCCCTCATTGGCTATAACCTCAGTTTTGATGATAAGTTTATCTCGATGAGTTTAAGAAAAAATGGTCGGGAAGAGTTCCACAATCAGATGATTGACTTGTTGACTAAGGTTAAAAAGTCGGATAAGTTTCTTGACAATTATAGATTGGCCACAGTTCTTCATAAATATGGAATCACAAATAAAAAACCACATGATGCCTTGTCAGACGCGCGGTCTACATTAGCGTTGACAATGAAACTCATTGAAAATAAGAATTTGATCTTTTAATAAGGCTGTTAAATCAAGGATCTTTTACT # Right flank : TATGTACTCGCCGCCCGTATACATCTGGAACGGAATTCTTTGCTGAAATGTCAGAATCGGTCAATTCCAACCCTGAAATGCTGACTAACATGCGTGAGCTTTTCCCGGAAGCGGCAAATATATACGGTAAAATAATAGAGGATATGTTGAAATGATTAAAACCAACGCACAATTTCAGAAGATTTATGCACAGGCAGAAGATTTTTATGAGAAAAAATTCGGTAAAACCATTAATACGCCGTCTGTTTTCGCTGGCCTTGTTCCAGGACTATCAGAACACGTAGCAAAAACCGGCATCTATGACGGACAGGCAGCCGATATTATTTACGAATATATTAAAAAGTCAGATAAACCAATACCTGACGAAATAAACAATCGAATTTACTAAAAGCACTCGAGAAATTGAGTGCTTTTTATTTTCAGAAAAAACGTGAAATAAGAGCAACCGTAAGAGAAACGACAAGCGAAGCAGCGGCAGAAGTAATTACATTTTTCCATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCACAAGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.90,-13.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //