Array 1 2524106-2522576 **** Predicted by CRISPRDetect 2.4 *** >NC_008750.1 Shewanella sp. W3-18-1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2524105 28 100.0 32 ............................ ATTGAACATTATGAAGCTCAAATTCTCTTACT 2524045 28 100.0 32 ............................ ACCACGGCCACCATTGCAGCGACCGCTTTTGT 2523985 28 100.0 32 ............................ GATTGGCAAAACCTCGAAACATGGCGTGAGAC 2523925 28 100.0 32 ............................ AGGTGAAGCAATTATGGCAATTGCTGAAGGTT 2523865 28 100.0 32 ............................ GATTTGGCAACAGGGTTTAGCGTTACCGTTTG 2523805 28 100.0 32 ............................ GTCTGTATAAGCTAGACGGGCATAATCACAAT 2523745 28 100.0 32 ............................ GATCACACCCATGGGCGATTGATACCCATACC 2523685 28 96.4 32 A........................... AAAATTTATTTGGAAACTAATATGAAAATATT 2523625 28 100.0 32 ............................ AATAAAGCAAATTGACTGCACCTTTACTGCTC 2523565 28 100.0 32 ............................ TAGCTGTTTGACCTAAAGCTGTTCTCATATCT 2523505 28 100.0 32 ............................ TGTTGGTGCTGCGGTTTTAGCTGTTGCGGCTA 2523445 28 100.0 32 ............................ ATTGGTGCCATGCCTAGTTGAACCATTTCAAC 2523385 28 100.0 32 ............................ TCACAAATGGTATTAATTGAAGAATAAAGCGA 2523325 28 100.0 32 ............................ ATTCCAGCCTGTTTTATTTTTGTCACAATGGC 2523265 28 100.0 32 ............................ GATCCGCTGCAAATGGCGGCATCACTTAATTC 2523205 28 100.0 32 ............................ TTCATGAAAAAGCACGTTGAAACGGCGATTCG 2523145 28 100.0 32 ............................ TACAGCCGCCCACAAGGTGGCGTCAAGCTGGC 2523085 28 100.0 32 ............................ ATCTGGCAGTACGACGAGCTTAAGATTATGAC 2523025 28 100.0 32 ............................ ATTGGTCGGAAACTCGAACTGGTCGAATACGA 2522965 28 100.0 32 ............................ TAACTGAACAAGATAGGTATCTGCAATCGCTA 2522905 28 100.0 32 ............................ TAGGGGATAAACTACACCGCTATGTACAACCT 2522845 28 100.0 32 ............................ TGTACAGCCGTGATTTTAGCAATCGCTTTGGT 2522785 28 100.0 32 ............................ TACTGGCGGTACTTGTTCTCCATTTCAATTTG 2522725 28 100.0 32 ............................ GACTCTATGAGTAGCGTTTTACCACCTAACAC 2522665 28 100.0 32 ............................ CACAAGAGAAGGTGAAGTATTTAAAAATTCAA 2522605 28 89.3 0 ..........G...T...........T. | TG [2522581] ========== ====== ====== ====== ============================ ================================ ================== 26 28 99.5 32 GTTCACCGCCACACAGGCGGCTTAGAAA # Left flank : AATATGCTTACTTTAAACGCCGCCACTTTAAGTCACCTGACAAACTGCGCAGAAATATCGATGCTCGTGCGATAGTGATCGCCCAAAAAAATGGCTTTGCTATTAATGAAGTTAAGACGCGTTTATTAGCGTCGATAGATAATCTCGATACTAAATCTAAATTGCCGTTTATCAACTTACGAAGTTTATCAACGGAGAAAGATGTCAGTCCCGCAGATCGCAGAAAGTTTTTATTGTTTATTGAGTGTGAAAAAGTCACCAAACCTAGTCAAAATAATGGGCTATTTAATTGCTACGGGCTTAGCCGTCGTGCTCAAACAGAACAAGCCGCAGTCCCTTGGTTTGAAGGTTAATTTAGAGACCTAAAATACCCTTTATTTTTGCTCTTTAAAAAATTAGTTTTAAAACAAAAAGTTACAACAGTTGATATTTAGAAAGGTAAAAGTACGTTTTTTTACCTATCTGCCTGTTGTAACTTATTTTTTTGCAGATAAGCTATT # Right flank : TAGCGGTAAGGGTGAGTGCTAATATTGGCGTTAATGTCGTTGTTAACTTGTAGTCTTATCTTAAATCAGCATAATGCTTCGAACTCCCTTTTAACTTTAAGCCTAGTATTGTGATGTATGGCGTCAGCTAGAGAGTGCCAGCCCATATCGGCTATTGATGAGTTCAATAATTGATTACGGCCTTACGATACTTTTTGAATATTTTATAACACCTTGATAAAGGATAGATTTCCCCTTTGACTCGCTCCCGCCAATCAACCACTCAAGCCTCAGTGGTTAAGCCTTTAGCCTCAAACGGTTCTGTATCGGTAAGTCGACTCTCGACTGAAGTGCAACGTGCATTTTTGCAAGGAGGGGTATTGTCGACGCATATTCAAGGGTTTAGTGCTCGGGAAAGTCAAATGCAGATGGCACAAGGGGTAAGTGAGGCCATTGCATCAAAAGGTAATTTGGTGATTGAGGCGGGAACGGGGGTTGGAAAAACCTTTGCCTATTTGATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCACACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCACACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3946758-3947805 **** Predicted by CRISPRDetect 2.4 *** >NC_008750.1 Shewanella sp. W3-18-1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3946758 28 100.0 32 ............................ CGCGCCAAAGTTGTAAATTAGGCTTAGGTACG 3946818 28 100.0 32 ............................ TCCTCCATTTGTTGTTGATGTAGTTATTACTT 3946878 28 100.0 32 ............................ TGTGTCAGTAAAAGTATCAGGCATTAATTCAG 3946938 28 100.0 32 ............................ GACATGAGAGTATAGTTCCCGTTTAGCTTGTG 3946998 28 100.0 32 ............................ ATAAATTCACCTTAACCAAGTTCGCGCCATTT 3947058 28 100.0 32 ............................ TGAGACTTAAACCATTGCTCGCCCCAGAACGA 3947118 28 100.0 32 ............................ TGCTAGGTCGTTGGCATAGTGTTTTGGCTAAG 3947178 28 100.0 32 ............................ ATTAAATTCATTAGCAGTAACATAAACCTCGA 3947238 28 100.0 32 ............................ TTACTTAGCACGACTCGCCGTAGTTCTCAGCG 3947298 28 100.0 32 ............................ TTAACACGAGCGTGAGCGGCGTCACCATAGCG 3947358 28 100.0 32 ............................ TTTACCGTTTCTTTGGCTGCTGCAATCTTCTT 3947418 28 100.0 32 ............................ CAAGTGACACACAGCAGACGAAACAAATTCAA 3947478 28 100.0 32 ............................ ACGGAGTTTAAATCTGCATACTTAGATTTAAA 3947538 28 100.0 32 ............................ ACCAAAGGCGGCATCATGTGGCGAGTAAATAC 3947598 28 100.0 32 ............................ TCCATGCGAAGGGTGACATCCAGCGACAACAA 3947658 28 100.0 32 ............................ AATGTACCGCGACCATCGATACCATACGGATA 3947718 28 96.4 32 ....T....................... AGTGCCATCGATGGCGCAAGATAATAGCGACC 3947778 28 85.7 0 ...............A....T.....TG | ========== ====== ====== ====== ============================ ================================ ================== 18 28 99.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TACGGGGTCTGCAGCGATAACCAATTTGTAGAACGCTATAACCAAGGGCATCAACAGTATCTCGTCAATAAGCGTTTGGCGGAAATCGCAGACCGTTTACACACTATTGATAGTGAGATCAGCAGCATTAATACCAAACTCAATAATCTCACCGATAAAGCCGACTTATTAAGGCAAAAAAATATCCTCTTAAATGAAAAAAATCATCTTCTAGATGAAAAAGCCCGCCTACGCCAAGGAAATATTGAGTTTAAATTTAGATTCTAACCATAAAAATCTAGCCATCCACAAAGCCAATTCAAAAGAGTAAACCCAAACAAAAATGTTAAAAGGAACAGGCCGTAAATAAGGCTATTTTAGGATGACTCACCCATACTTCTATTGCATTTAGAAATAAGCTATAAATACAAAAGGTTACAATAGATGATTTTTAAGAAGGTAAAAATACGTTTTTTATCCTAACTGCCTGTTGTAACTTTATTTTATTGATTTATTCTACA # Right flank : GTCACCAACAATGCAAAACTGATCTACCTGTTTTCACTATCAAAGATGGGACATACCCAACTCTCTATGGATTAACAATCAAAACCGAGGTGACAGTATTCTACTCTTCCCTTCGAAATTGCCTCAGGGCATTTGCATTCGTTGCGTGAGCGAGGCATGGTCATTCTCGTGCATATCTGGACCCATCCATGCACTTCACGACATTCTGACATCCTGCCTATCAGATGCCGAGATAGCGTCAGTCGAATCAAGGACGAGCGTCTGACGCTATAGCATAAGAACGCTAAATGCCCAAGGGGCTTTCAACTCCGTTAGGGGCGTCTTGGCTGATGTGAAAACAATAGCAAGGAAGATAGGACGAGCAGTCCTCCTTGGTCGACTCTTGATTAAGAATAAGGAGGGAAAGCCCCACGACTTTTATTCACCTCGGCCGTAAGGCCGCAATGACTAACAATGTAGAAAGATGGGACACTCTAACCACCAGCAAAAGTATACAATGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //