Array 1 257910-258147 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOWF01000003.1 Paludifilum halophilum strain DSM 102817 NODE_3_length_396078_cov_31.8442_ID_2664, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 257910 30 100.0 39 .............................. TCCCGCCTAGGAAGTAAAGGTGTTCAAAAGGTTTTCAAA 257979 30 100.0 41 .............................. GACGAACTGTCGGCTTATGTTCAACAAATCTATTTTTTTGA 258050 30 100.0 39 .............................. ACCTTCACGACCTTCCCATCTTCTTCCGTAAGAATCGGC 258119 29 73.3 0 ....CC..G.......TA...-.A....C. | ========== ====== ====== ====== ============================== ========================================= ================== 4 30 93.3 40 GTTTATAATCTACCTACGAGGCATTGAAAC # Left flank : GAAAAAGCCTCACCGCCCAGGGCCGAGTTAACGGCGAAAGGGGGTGAGGCGCATGGAATGGCTTCAAGCGATCGCGGCTTTAATTGTCGCACTTGTGGCCGTTGCTCGCTTCTTCCTGGACTGGCAGGATCGCCACCGGAAGAAGTAGCGTTGACCCTCTGGATTGGGCTCAGTTAAGTTAAAAGCCGCTAACGAACTGCCATTCGATAGCGGCTACAGGCCCACGGTGGGGCAACCCTGACTGTTCTCTCTTGCCCTTTATTATATACGATTCATGTGAGTATATTCAACAAACAACGTGTGACTTCACAATATTACTTCGTATACCGAAATGGTCGTCGATGTCCAGTAGGGTCAAAACCCCCGGGGATCGACGACATTTGCAAATCCGGCAGAACCCTCGTTCCTACAGGAAAAGCGAGAAAAGGAGTTGAGAAAAAACCGATTTTTGTATACCCTATGGGTAGAAAAGAAATGGCTCTGTTATGGGCTTTTTTGGG # Right flank : CCTGGATTCAAAAAACAAAAAGCCGAGCGGGGATAATGATGTGCGCCCCTTAAAGTAGACACAGGAACCCCCCCTGTGAACAGAACTACTTTTAAGGGGTGTTTTTCATGACGAAAAAAAGACAGAAATTCAAGTATTGTCCCTTCTCTCTGAAGATGCAGGCCGTTCAAATGAGACTGCAGGGAAACGCCAGGATCTCTACAATCACCGCATACAGTGGTCTCGACCATCTATATCATCCTTTCCATGAAAAAAGCACCCGAGTGGGTGCTTTACAAATTAACAATTTCAAGATCTTGTTTTTCTTCTTTACTATCTTCCAGAGCTTCATACAATACATCGAAAAAATCCTGTCCAGCACTGGTTACAAAGTAGTTTCCCAGATCCGTTATATCGGAACTGATATTGTCTCCCCAAAAAGGCCTTTTACTTAGATCTTCAATATCCCAAACAACTTGATCGGGTGAAAAAGCACTTAATTATTCTTGAATCTCTTTGGC # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:0, 3:3, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATAATCTACCTACGAGGCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 1 5844-5481 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOWF01000005.1 Paludifilum halophilum strain DSM 102817 NODE_5_length_304586_cov_28.8158_ID_2668, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 5843 30 100.0 36 .............................. GAAACCCCCATTTCTTCAGTTTTTCAAGTGCTGTTC 5777 30 100.0 38 .............................. CAGTCTGGTCGGACGCGGTAGGCGCGGTAACAGCGGAC 5709 30 100.0 36 .............................. TGGAGAGTTCGACAAATTTCCCTTGAACCCTCCATG 5643 30 100.0 38 .............................. TTCCTCTGCGAATCCGGTTCTGACCCGTGGTGAGAACC 5575 30 100.0 35 .............................. TCACCCACTTGGGCGGTTTCGGTGTCGCCCACCTG 5510 30 96.7 0 ........C..................... | ========== ====== ====== ====== ============================== ====================================== ================== 6 30 99.5 37 GTTTATGATCTACCTATGAGGGATTGAAAC # Left flank : AATGAAAAGCCTCACCTCCCGGGCCGAGTTTACGGTAAAGGGGGTGAGGCGTATGGAATGGCTTCAAGCTATTGCGGCTTTAATTGTCGCACTTGTGGCCGTTGCTCGCTTCTTCCTGGACTGGCAGGATCGCCACCGGAAGAAGTAGCGTTGACCCTCTGGATTGGGCTCAGTTAAGTTAAAAGCCGCTAACGAACTGCCATTCGATAGCGGCTACAGGCCCACGGTGGGGCAACCCTGACTGTTCTCTCTTGCCCTTTATTATATACGATTCATGTGAGTATATTCAACAAACAACGTGTGACTTCACAATATTACTTCGTATACCGAAATGGTCGTCGATGTCCAGTAGGGTCAAAATCCCCGGGGATCGACGACATTTAGAAATCCGCCAAAACCCTTGTTCCAAAAGGAAAAGCGGGAAAATGAGTTGAGAAAAAACCGATTTTTGTGTACCCTATGGGTAGAAAAGAAATGGCTCTGTTATGGGCCTTTTTGGG # Right flank : ACAACTCATTCCGGCTGATACCCTCTTTCTTACATTCACTTCCAATCTATCTATGAGGAATGAACCTTGGATTCAAAAAACAAAAACCCTGGGCAGGGGTTACCCCGCCCGGGGTTTGTCATATCTCAGTGTTTGGCATCAATGAAAGCATCGAACCCTTTTTCCTCTAATTCCTTTACCCGCTGTTCAGCATTATCTTTTTTCTGGAACGAACCGGCAACTACCCGAAAAAAAGTATCTTCCGGATCTGGATCGGGCTCCGGCTTTGGTTCCGTCACTTTTTTCTCCAGCCCCTCCGTGTCCGCAATCGCATCCGCCAGAGCTTCCGCCACATCGTCAAGGAAGGCATCCGACTTCAGCAACTTGGCATCCTTGTCTGTGTCAATGAAACCGATCTCCACCAGGCAGGCCTTCATCCGGGAAACCCGGATGACATGGAAGTTTGCCTTTTTCTTGCCCCGATCTCTATGATCGTACTTTTTCAGGATCGGGCCCATGTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATGATCTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 141-981 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOWF01000015.1 Paludifilum halophilum strain DSM 102817 NODE_15_length_46106_cov_29.6119_ID_2688, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================================================================================================================================================================================================================================= ================== 141 30 86.7 37 .AG.....A............G........ TACAACCAATCCATCCACAAATTCCTCGGCATCCTGA 208 30 93.3 38 ........A............G........ TGAACGTGGTGCGGATGATCGGACCGGTGTTGATGCGC 276 30 100.0 36 .............................. TTGGAAAGCTATTAAAAGAAAAAGGCCTGACCCAGA 342 29 76.7 249 ....T.G.T.......C..-....GC.... TTTAAACGCGGTTCGATCAGACGGAGGAGTAGAATCAACGAGGTCCCAGTTTAAAGATGGATTTATTTCGTGAATCGAAAATGTCGTCGATGTCCAGTGAGGGAAAAACCCCCCGGGGATCGACGACATTTTTGTATTCAGGGGATTCCTTGATATCACGGGAAAAGCGAAAAAAGGGAGTTGTGGAGAGGCAGATTTTCGTGTACCTTAAGGAGAGAAGAAAATGGCTTGGTTATGGGCTTTTCTGGG 620 30 100.0 38 .............................. AAACGGTAATTCCCTTGAACCAAGGGGACGGCTTTCGT 688 30 100.0 35 .............................. CCCAAAAGTATGGTGATATCTAAAATTTCATCACC 753 30 100.0 36 .............................. CGGTCTATTCGCATCGACGTTGTAATGGCTTCGTAG 819 30 100.0 37 .............................. ACAGGACTGTATCGGCTGATAGCCGATAGCCGTAGAT 886 30 100.0 37 .............................. ATCAATTGGTGTCAGAAGAGGTCGGGGGATACGTCGG 953 29 76.7 0 ......G.T..G....C..-....GC.... | ========== ====== ====== ====== ============================== ========================================================================================================================================================================================================================================================= ================== 10 30 93.3 60 GTTACCAAGCTACCTATGAGGAATTGAAAC # Left flank : TATTCCCAACCTCCAACGCTTCTTTGGAGACCTGTACTTTAAACTCGTTTGAGTAATTTTGCCGTTTCATCAGAAAAACCCCTTCCAACTTTAGTTTAGAACATCATCTCCAGGATGTCCAAAGTCGGATAGGGGCTTAAG # Right flank : CTTTAAACACGGTTCGATCAGACGGAGGAGTAGAATTAACGAGGTCCCAGTTTAAAGATGGATTTATTTCGTGAATCGAAAATGTCGTCGATGTCCAGTGCGGGAAAAACCCCCGGGGATCGACGACATTTCTATATCCGTCGGATTCCTTGATAGCACAGGCAAAAGCGGGAAAAAGGAGTTGTGGAGAGACGGATTTTCGTTTACTTTAAGGATAGAAGGAAATGGCTTCGTCATGGGCTTTTCTGGGTTACCGATTTACCTACGAGGAATTGAAACCCTGTCACATCCCAGGCACTGATAGACTGAACGTCCGTTACCGATCTACCTACGAGGAATTGAAACTATTTCGTGGCTTGATCAGCTTTTTGCAGAACCGTCGTTACCGATCTACCTACGAGGAATTGAAACACTCCAATGGCGTAAGGGTCCAAAACTCATCCGGTTGTTACCGATCTACCTACGAGGAATTGAAACTGCTTCAGCTAAGCCCGTACAGT # Questionable array : NO Score: 3.41 # Score Detail : 1:0, 2:0, 3:3, 4:0.66, 5:0, 6:0.25, 7:-2.50, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACCAAGCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [6-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 2 1230-1525 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOWF01000015.1 Paludifilum halophilum strain DSM 102817 NODE_15_length_46106_cov_29.6119_ID_2688, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1230 30 96.7 36 .........T.................... CCTGTCACATCCCAGGCACTGATAGACTGAACGTCC 1296 30 100.0 36 .............................. TATTTCGTGGCTTGATCAGCTTTTTGCAGAACCGTC 1362 30 100.0 36 .............................. ACTCCAATGGCGTAAGGGTCCAAAACTCATCCGGTT 1428 30 100.0 39 .............................. TGCTTCAGCTAAGCCCGTACAGTCGTCGTATTCCAGTCA 1497 29 93.3 0 .................A...-........ | ========== ====== ====== ====== ============================== ======================================= ================== 5 30 98.0 37 GTTACCGATCTACCTACGAGGAATTGAAAC # Left flank : GTGATATCTAAAATTTCATCACCGTTACCAAGCTACCTATGAGGAATTGAAACCGGTCTATTCGCATCGACGTTGTAATGGCTTCGTAGGTTACCAAGCTACCTATGAGGAATTGAAACACAGGACTGTATCGGCTGATAGCCGATAGCCGTAGATGTTACCAAGCTACCTATGAGGAATTGAAACATCAATTGGTGTCAGAAGAGGTCGGGGGATACGTCGGGTTACCGATCTGCCTACGAGAATGCAAACTTTAAACACGGTTCGATCAGACGGAGGAGTAGAATTAACGAGGTCCCAGTTTAAAGATGGATTTATTTCGTGAATCGAAAATGTCGTCGATGTCCAGTGCGGGAAAAACCCCCGGGGATCGACGACATTTCTATATCCGTCGGATTCCTTGATAGCACAGGCAAAAGCGGGAAAAAGGAGTTGTGGAGAGACGGATTTTCGTTTACTTTAAGGATAGAAGGAAATGGCTTCGTCATGGGCTTTTCTGG # Right flank : CCTGAAACACGCGTTGCAACCTTTAACAAAGCTCCGCCTTCTTTGTACACTATCTACGAAAATACAATCTTCAAAAGCGGTTCGATCAGATGATGAAGCGTCCCATTTATAAAGATGGATTTATTTCGTGGATCGAAAGTGTCGTCGATGTCCGGTAGAGGAAAAAACCCCGGGGATCGACGACATTTTTGAAATGCCCGGATTCCTTGATACCATGAGAAAAGCGGGAAAAGGGAGTTGTGGAAAGGCGGGTTTTCGTGTACCTTAAGGAGAGAAAGAAATACCTTAGTTGTGGGCTTTTTTGGGGTTACCAAGCTACCTACAAGGAATTGAAACGCCGCCGCGAATGCCGCATCTACCTCATTCCATGGATCGGTTACCAAGCTACCTACAAGGAATTGAAACTGCTTCCTTACACTGTGGTTGTTTGGGTTATTGATCTGATTCAGCCGCGTGCTATCGATGCTGGACCCGGCGAGGGTTGATGCGTCTCCCTGTTT # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACCGATCTACCTACGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 3 2444-3025 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOWF01000015.1 Paludifilum halophilum strain DSM 102817 NODE_15_length_46106_cov_29.6119_ID_2688, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 2444 30 100.0 38 .............................. AGATGAGGCTCTTTCTGTTCCTGACCGGGATCTTAACC 2512 30 100.0 39 .............................. AACAGCTCCATCTTCTTGACATCCTCGAAGGTCAGCAGG 2581 30 100.0 40 .............................. TAATAGTTTCTATCCTCCCCAGTGGGTTGAGGTTTTGGGA 2651 30 100.0 41 .............................. ATATAAAACAAAAATCATCCCGATGATCCCTACATCACTTA 2722 30 100.0 40 .............................. CAACTCCCTTGCCTGTCGGACACAATCCCGCCATTTCTGT 2792 30 100.0 39 .............................. CAAAAATATGGATATGTTGTCCGTATCGCTTATAGAAAA 2861 30 100.0 39 .............................. GACGGATCGACCGGGTGCTGGTGATGCATGAAGGACGGA 2930 30 96.7 37 .................G............ ATCAATTGGTGTCAGAAGAGGTCGGGGGATACGTCGG 2997 29 80.0 0 ......G.T........G.-....GC.... | ========== ====== ====== ====== ============================== ========================================= ================== 9 30 97.4 39 GTTACCAAGCTACCTACAAGGAATTGAAAC # Left flank : GTGGTTGTTTGGGTTATTGATCTGATTCAGCCGCGTGCTATCGATGCTGGACCCGGCGAGGGTTGATGCGTCTCCCTGTTTTCCAGGGGTTCTGTTTAGGTTACCGATCTACCTACGAGGGATTGAAACCGCATGCCCATGACGATATTTGCCGGAGTGGAAAGGATGTTGCCAAACTACCTACGAGGGTTAGGGATCGAGTGTGAACGTAACCCTGACCACTCAAGAACGTGCTAAATCAACACCTCTGGCAAACGCGGTTCGATCAGATGGAGAAGTAAAATTAACGGGGTCTCATTTATGAAAAATGGATTTTATTTCGGGAGGCGAAATGGTCGTCGATGTCCGGTAGGGGAAAAATCCCCGGGGATCGACGACATTTTTGTACCCGCTGGATTCCTTGATATCACGGGAAAAACGGAAAAAGGGAGTTGTGGAAAGGCGGGTTTTCGTGTACCTTAAGGAGAGAAAGAAATGCCTTGGTTGTGGGCTTTTTTGGG # Right flank : CTTTAAACACTTCGATCAGACAACGAAATAGAATCAATCAACGGTTTTAATTACAAGGATGGATATTTTGTGAATCGAAATTGTCGATGTCTTAGGGGAAAAACTACAAGAGTTCGAAGAGTATTCGTGCAGGTGGGAAATTTATGATGAATATCCAATGGAGAATGTTCATTAAATGGACTTTTATCATACTTCTCTCTTTTGTAGTCTTGGTTATCGTATTTTTCCAGCTTTTCGGATTATACCGTGTGTATGGAGACAGCATGGAGCCGGCATTGAAACATGATGAAATGGTGATGACCTTCAAATGGGGCCGAGATCCTGAGGTAGGGGACATTATCCTTTTTCGACAGGATCAGAACATCTATATCAAACGCGTCGTCGCCCTTTCCGGTTCTACGGTGGAAGCTAAAAACCAGCGACTATCCATCAACGGCAAACCGGCAAAAGAGGAGTATTTGTCAAAAGAACAGCCTTTGCAGGCGTTTGGTCCTGTCAAC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:0, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACCAAGCTACCTACAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 4 10290-11047 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOWF01000015.1 Paludifilum halophilum strain DSM 102817 NODE_15_length_46106_cov_29.6119_ID_2688, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================================================================================================================================================== ================== 10290 30 100.0 40 .............................. CCTCCGGCTGCTCTTGGGGCTGCTTTTGAGGCTCCTTTTG 10360 30 100.0 42 .............................. AAGCAGTACGCCGTTTTGTACGATGAAAATTCGGGCCCGCCG 10432 30 96.7 35 ........A..................... CCTGATGATTGCCATTGTCTTGAACTTCGTGTTCA 10497 30 83.3 36 ....T.G.T...A........A........ CGGTCGGGAGCGGATGCGCTTTGTCATGCTGAATAT 10563 30 86.7 38 .G...T...........A...A........ CCCTGTATATCATATACAGAGCAACTTGTAGAAAGAAA 10631 30 93.3 35 .................A...A........ ACTCTCGGAGGAGCGTATAACCGCTGTCTCATAAG 10696 30 80.0 41 ....TAG.T........A...A........ AATAAGAGCCGATAAAAGACGTCAAAACCCTTCGTAACAGC 10767 30 86.7 164 ......G.TT...........A........ TCGGCTCCGGATTTCCCATTCAAATCCTCCTTTTTTATGGTTACCGATCTACCTATCGGATTCCTTGATGCCATGGGAAAAGCGAAAAAAGGGAGTTGTAAAGAGGCGGATTTTCGTATACCTTATGGATAGAAGGAAATGGCTTGGTTGTAGGCCTTTCTGGG 10961 29 93.3 29 ..................-..A........ TCCTTTCTCTGGAAAAATTTGAGTTTTCA Deletion [11019] 11019 29 80.0 0 ..C...G.T.......CA....-....... | ========== ====== ====== ====== ============================== ==================================================================================================================================================================== ================== 10 30 90.0 51 GTTACCAAGCTACCTATGAGGGATTGAAAC # Left flank : TATTTTGGAAAGATGCAGACGTTTTGTTGAAAAATAATACAAAGTTTTTTTATGAAGTTGTTGACTTGATTTTAGGGACTCTAAAAGAGTTAACTGTCGGCGATGAAATAGAAAAAGAGAATAGCCCGGAAGAGTTTAAAGACTGGATACCTACTTGGGTCGGTTGTCTTATTACAGGAGATTTAACACTTCTTCAAAACGAGTATGACTATTCCATATTAAAAAGTTTATTTTGGGAAGAAATGTTTTTTGAACTTGATTCTAATACTACTGTATTTTTGACTAAGTAGTTTATCCCTTTATGATGATCAAATTTATTTCGCGAATCGAAAATGTCGTCGATGTCCAGTAGGGGAAAAACCCCCGGGGATCGACGACATTTTTGTATTCGGGGGATTCCTTGATATCACGGGAAAAGCGAAAAAAGGGAGTTGTGAAGAGGCGGATTTTCGTGTACCTTATGGATAGAAGGAAATGGCTTGGTTGTAGGCCTTTCTGGG # Right flank : CCCGAAACACGCGTTGTACCCTTTAATAAAGCTCCGCCTTCTTTGTACGCCATCTACGAGGATACAACCTTCAAAAGCGGTTCGATCAGACGACGAAATACAATCAACGGGGTCCCATTTATAAAGATGGATTTATTTCGTGGATCGAAAGTGTCGTCGATGTCCGGTAGAGGAAAAAACCCCGGGGATCGACGACATTTTTGAAATGCCCGGATTCCTTGATACCATGGAAAAAGCGGGAAAAGGGAGTTGTGAAGAGGCAGATTTTCGTGTATTTTATGGATAGAAGGAAATGGCTTCGTCGTGGGCTTTTCTGGGGTTACCGATCTACCTACAAGGAATTGAAACCCGGAATACACAGGGCAATTTGATTGAAACAAACAAGGTTACCGATCTACCTACAAGGAATTGAAACTCCCTTGCCGGAATCAAGGCGGACTCAGGGGAAACCGTTACCGATCTACCTACAAGGAATTGAAACAATACAATTAAGGAGATGA # Questionable array : NO Score: 3.67 # Score Detail : 1:0, 2:0, 3:3, 4:0.50, 5:0, 6:0.25, 7:-1.44, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACCAAGCTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 5 11365-11662 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOWF01000015.1 Paludifilum halophilum strain DSM 102817 NODE_15_length_46106_cov_29.6119_ID_2688, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 11365 30 100.0 37 .............................. CCGGAATACACAGGGCAATTTGATTGAAACAAACAAG 11432 30 100.0 36 .............................. TCCCTTGCCGGAATCAAGGCGGACTCAGGGGAAACC 11498 30 100.0 39 .............................. AATACAATTAAGGAGATGATCAAGGACTCGGAAGACAAC 11567 30 100.0 36 .............................. TAACTTAGAAGTCATCGTTTCCCGGTATGGTGTGGA 11633 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 5 30 100.0 37 GTTACCGATCTACCTACAAGGAATTGAAAC # Left flank : TGCCATGGGAAAAGCGAAAAAAGGGAGTTGTAAAGAGGCGGATTTTCGTATACCTTATGGATAGAAGGAAATGGCTTGGTTGTAGGCCTTTCTGGGGTTACCAAGCTACCTATGGGAATTGAAACTCCTTTCTCTGGAAAAATTTGAGTTTTCAGTCACCGATCTACCTACAAGGGTTGAAACCCGAAACACGCGTTGTACCCTTTAATAAAGCTCCGCCTTCTTTGTACGCCATCTACGAGGATACAACCTTCAAAAGCGGTTCGATCAGACGACGAAATACAATCAACGGGGTCCCATTTATAAAGATGGATTTATTTCGTGGATCGAAAGTGTCGTCGATGTCCGGTAGAGGAAAAAACCCCGGGGATCGACGACATTTTTGAAATGCCCGGATTCCTTGATACCATGGAAAAAGCGGGAAAAGGGAGTTGTGAAGAGGCAGATTTTCGTGTATTTTATGGATAGAAGGAAATGGCTTCGTCGTGGGCTTTTCTGGG # Right flank : CTAAAAACTTACCGTAGGTGTTATCGGACGGGCTTATCAAGTACCTATAAGGAGCTTTCCATACCACCCATTAAAGTGGGTGGTTAACGTTTGTCGTAGAATCGCTTTAAATGTGGACATTTAGTAAAAATACGATTCATATTTTGAGATAAATTTCTGAAGGGTCTTGCAACACAGTAAGGTTTTATAATAAGATTAAGTCGCAGTTATTTATACCCATCATTGGTGGTGACAGGGATTGCGGTTGAGGATACAGTTCGCTTTTCGGGACCCTTTGTTCTTACCCCAGTCTTATCAAAGGGCTTTGCAGGGGATGATTTATTCGGCGATCGATGATGAAAAGGTTCGATTTTTTTTGCATGAGGAAGGATTTTTGTGGAAAAAGCGCCGATTTAAGCCTTTCGTGTTTTCGTGGATGCAAGGTTCCTTTCGGATGAACAGCAAAGGATTTCTTTTTGATTCACCCGTTCATTTATACATCAGTTCCTGCTGGGAGCCTT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACCGATCTACCTACAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 6 21017-21868 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOWF01000015.1 Paludifilum halophilum strain DSM 102817 NODE_15_length_46106_cov_29.6119_ID_2688, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 21017 30 100.0 42 .............................. CCGTAATTTCTCTATTGATCGTTGCTATTTTGTTGTGTTACC 21089 30 100.0 37 .............................. CGTGCTTGATGTGACGAAATCGTACTGGTAATATATA 21156 30 100.0 39 .............................. ACAAATTTCTGAATAAAGGAGTCGCGAAGAGAGTCGAAG 21225 30 100.0 40 .............................. ACGGGAGACGGGGATACAGCGGATATTAGAGCGGATATGC 21295 30 100.0 37 .............................. AACGACAGACAACGGGACATGATAGAGCGGTACTTCG 21362 30 100.0 36 .............................. TCAAAATACCCAAGGTTTACTTCACGTTCACCATCC 21428 30 100.0 40 .............................. CAACGACACAAAGTACTATCTTGTCGAGAAGTGTTCTCTT 21498 30 100.0 40 .............................. ATCTTAAACCGCTTGGTTTTCCCCGTCTTTTGTTCCTTGA 21568 30 100.0 36 .............................. CCTTTTCGGGCTTCAAGCCTCCTACACGCATCCCTT 21634 30 96.7 40 .........................A.... CTGTGTCCTCTTTCACCGTGTCCTCTTTTGCCATATCCTC 21704 30 93.3 36 ......G.T..................... CGCCTTGTAACCATCCGATGGGATCGCCACGGCCCA 21770 30 86.7 39 ....TTG.T..................... TGGTGGCATGGAAAGTGATCCCGCCCGCTATGAAGGGCG 21839 30 86.7 0 .................A.A....C....A | ========== ====== ====== ====== ============================== ========================================== ================== 13 30 97.2 39 GTTACCAAGCTACCTATGAGGAATTGAAAC # Left flank : GATCTACCTATGAGGAATTGAAACTTCCCTGGCATCCTTCTCCTCCGCCATTTGATCCATCACTGATCGGTATTCCTCTACGACTTGTTCATTCGTCACGCCATGGACCTCCCGACAATGGCGGGCGAAGTGAGTTATTGATCTACCTATAATGAATAAATAATGTGTTACCAAACTATCTACAAGGGTTAGGGATCGAGTGTGAATGTAACCCTGACCCACCCAAGAACGTGCTAAATCAACGCCTCTGGCAAACGCGGTTCGATCAGACGGAGAAGTAAAATTAACGGGGTCTCATTTATGAAAAATGGATTTTATTTCGGAAGGCGAAATGGTCGTCGATGTCCAATAGGGGAAAAACTCCCGGGGATCGACGACATTTTTGTACCCGCTGGATTCCTTGATATCATGGGAAAAACGGAAAAAGGGAGTTGTGGAAAGGAGGGTTTTCGTGTACCTTAAGGAGAGAAAGAAATGCCTTGGTTGTGGGCTTTTCTGGG # Right flank : ATCCGAAACACGCGTTGTAATCTTCAAATGCCGTTCTCTTGTATGCGATCGACGAGGATTCAGGGTTCAACAACGGTTCGATCAGATGGAGAAGTAAATTAACGGGGTCTCATTTATGAAAAATGGATTTATTTCGGAAGGCGAAATGGTCGTCGATGTCCGGTAGGGGAAAAATCCCCAGGGATCGACGACATTTTTGTACCTACTGAATTCCTTGATAGGACGGGAAAAACGGAAAAAGGGAGTTGTGGAAAGGCGGGTTTTCGTGTACCTTAAGGAGAGAAAGAAATGGCTTCGTCATGGGGTTTTCTGGGGTTACCGATCTACCTACAAGGAATTGAAACGTTCTCAAGTTGATAAGCCCGAATCGGAGCGCGTTGAGTTACCGATCTACCTACAAGGAATTGAAACAACAATCAGATGAAAAAGAAAAATAGGATTTCCACCAGTTACCGATCTACCTACAAGGAATTGAAACGCGAGGTTTTGTCAGGTGACTG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACCAAGCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 7 22182-22954 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOWF01000015.1 Paludifilum halophilum strain DSM 102817 NODE_15_length_46106_cov_29.6119_ID_2688, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 22182 30 100.0 37 .............................. GTTCTCAAGTTGATAAGCCCGAATCGGAGCGCGTTGA 22249 30 100.0 37 .............................. AACAATCAGATGAAAAAGAAAAATAGGATTTCCACCA 22316 30 100.0 35 .............................. GCGAGGTTTTGTCAGGTGACTGAGTCAATTAATTG 22381 30 100.0 35 .............................. AATCTGGGACGGGTAGATCGAGACATCGAGGAACA 22446 30 100.0 35 .............................. CGAGTGTCGGCCTGTACAGCGGGTCGAAAAACCTT 22511 30 100.0 41 .............................. ACGCCCTCAAACTCCACCCAAGCGACGGCTTCAGCCATCAC 22582 30 100.0 39 .............................. TTCGATATTCTTCCGTACGTCTTTCTGTTAGGGGAACAG 22651 30 100.0 39 .............................. CTCGGAGGGAGAGCAGATCCCCGACTCGGAGCCCAACTC 22720 30 96.7 39 ....T......................... CCGGGTATTGAAACCGGGCGGTCATTTGCTTTGCTTTGG 22789 30 96.7 40 ....T......................... CGGAAATATCCAATGCATCAGTGATCGTTTTCTTCTTTTG 22859 30 90.0 36 ......C.........T....G........ GTGACTTCACGATGAAAATGTTCGGCGTTGATCGCG 22925 30 90.0 0 ................TG.......A.... | ========== ====== ====== ====== ============================== ========================================= ================== 12 30 97.8 38 GTTACCGATCTACCTACAAGGAATTGAAAC # Left flank : TGTCCTCTTTTGCCATATCCTCGTTACCGATCTACCTATGAGGAATTGAAACCGCCTTGTAACCATCCGATGGGATCGCCACGGCCCAGTTATTGATCTACCTATGAGGAATTGAAACTGGTGGCATGGAAAGTGATCCCGCCCGCTATGAAGGGCGGTTACCAAGCTACCTATAAAGAATCGAAAATCCGAAACACGCGTTGTAATCTTCAAATGCCGTTCTCTTGTATGCGATCGACGAGGATTCAGGGTTCAACAACGGTTCGATCAGATGGAGAAGTAAATTAACGGGGTCTCATTTATGAAAAATGGATTTATTTCGGAAGGCGAAATGGTCGTCGATGTCCGGTAGGGGAAAAATCCCCAGGGATCGACGACATTTTTGTACCTACTGAATTCCTTGATAGGACGGGAAAAACGGAAAAAGGGAGTTGTGGAAAGGCGGGTTTTCGTGTACCTTAAGGAGAGAAAGAAATGGCTTCGTCATGGGGTTTTCTGGG # Right flank : CCCGCAACACGCGGTGTAACCTTCAAATCTTTGTATACCTCCTACAGGAATTCAGCCTTCAAAAGCAGTCTGATCAGAAGAAGTAAAATTAACGGGGTCTCATTTATGAAAAATGAATTTTATTTCGGAAGGCGAAATGGTCGTCGATGTCCGGTAGGGGAAAAATCCCCAGGGATCGACGACATTTTTGTACCTACTGAATTCCTTGATAGGACGGGGGAAAGCGGGAAAAGGGAGTTGTGGAGAGGCGGATTTTCGTGTACCTTAAGGAGAGAAAGAATTGGCTTCGTCATGGGGTTTTCTGGGGTTATTGATCTACCTATAAGGAATTGAAACTTGGTTTAGGCGGATCTTTTTCTATAGGTTTTCTGCGTTATTGATCTACCTATAAGGAATTGAAACTTCCCCCTGTTCGCCCAGGCGGGCGTTCATAATCTCGTTACCGATCTACCTATAAGGAATTGAAACTGGCACTCTGGTGATCATCGACCATGGCGGCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACCGATCTACCTACAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 8 23260-23623 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOWF01000015.1 Paludifilum halophilum strain DSM 102817 NODE_15_length_46106_cov_29.6119_ID_2688, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 23260 30 96.7 36 ................T............. TTGGTTTAGGCGGATCTTTTTCTATAGGTTTTCTGC 23326 30 96.7 36 ................T............. TTCCCCCTGTTCGCCCAGGCGGGCGTTCATAATCTC 23392 30 90.0 39 ....CC..........T............. TGGCACTCTGGTGATCATCGACCATGGCGGCGGGATTCA 23461 30 100.0 37 .............................. ATCGTCGCTGAGGGCATTCTGGCTAATCAATATATGA 23528 30 100.0 36 .............................. GTTTTTTTCTGCGGTGTTCTTTCGTGTTGTTAATTA 23594 30 90.0 0 .....C...........G...G........ | ========== ====== ====== ====== ============================== ======================================= ================== 6 30 95.6 37 GTTATTGATCTACCTACAAGGAATTGAAAC # Left flank : AAACCGGGCGGTCATTTGCTTTGCTTTGGGTTATCGATCTACCTACAAGGAATTGAAACCGGAAATATCCAATGCATCAGTGATCGTTTTCTTCTTTTGGTTACCCATCTACCTATAAGGGATTGAAACGTGACTTCACGATGAAAATGTTCGGCGTTGATCGCGGTTACCGATCTACCTATGAGGAATTAAAACCCGCAACACGCGGTGTAACCTTCAAATCTTTGTATACCTCCTACAGGAATTCAGCCTTCAAAAGCAGTCTGATCAGAAGAAGTAAAATTAACGGGGTCTCATTTATGAAAAATGAATTTTATTTCGGAAGGCGAAATGGTCGTCGATGTCCGGTAGGGGAAAAATCCCCAGGGATCGACGACATTTTTGTACCTACTGAATTCCTTGATAGGACGGGGGAAAGCGGGAAAAGGGAGTTGTGGAGAGGCGGATTTTCGTGTACCTTAAGGAGAGAAAGAATTGGCTTCGTCATGGGGTTTTCTGGG # Right flank : CCGCATGCCCATGACGATATTTGCCGGAGTGGAAAGGATGTTGCCAAACTACCTACGAGGGTTAGGGATCGAGTGTGAACGTAACCCTAACCGACCCAAGAACGTGCTAAATCACAACGCTTCTGGCAAACGCGGTTCGATCAGATGGAGAAGTAAAATTAACGAGGTCCTATTCATAAAGATGGATTTATTTCGTGAATCGAAAATGTCGTCGATGTCCGGTAGGGGAAAAATCCCCGGGGATCGACGACATTTTTGTACCCGCTGGATTCCTTGATATCATGGGAAAAACGGAAAAAAGGAGTTGTGGAAAGGCGGGTTTTCGTGTACCTTAAGGAGAGAAAGAAATGCCTTGGTTGTGGGCTTTTTTGGGGTTACCAAGCTGCCTACAAGGAATTGAAACGGTCTTCTTTCGTCTCCAAACTATTTCTGCTAACGTAGTGTTACCAAGCTGCCTACAAGGAATTGAAACCTGAACCCATTTTCGGTGTTCTCCCTTC # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:0, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATTGATCTACCTACAAGGAATTGAAAC # Alternate repeat : GTTATTGATCTACCTATAAGGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 9 23996-24498 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOWF01000015.1 Paludifilum halophilum strain DSM 102817 NODE_15_length_46106_cov_29.6119_ID_2688, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 23996 30 100.0 39 .............................. GGTCTTCTTTCGTCTCCAAACTATTTCTGCTAACGTAGT 24065 30 100.0 38 .............................. CTGAACCCATTTTCGGTGTTCTCCCTTCTGGTCACCGA 24133 30 100.0 40 .............................. GTCGAAAAGGGTCAGACGACCCGTATCGGTGAGAAAGAAG 24203 30 100.0 37 .............................. TCTGTGGCTTTGTGTTGGAATTCATATGGGATTTTGA 24270 30 100.0 35 .............................. ATTTCTATCAGATCGTGAAAAGGCCACTCGGACCC 24335 30 96.7 37 ...........A.................. CTTCGCATCTTCGTAGGTGAATTTCATCTTAGTTCTC 24402 30 93.3 37 ...........A.T................ TCCAGGCTAACGAACCAGCAACGGAACCAACAACCAG 24469 30 93.3 0 .........T..............C..... | ========== ====== ====== ====== ============================== ======================================== ================== 8 30 97.9 38 GTTACCAAGCTGCCTACAAGGAATTGAAAC # Left flank : CGCTGAGGGCATTCTGGCTAATCAATATATGAGTTATTGATCTACCTACAAGGAATTGAAACGTTTTTTTCTGCGGTGTTCTTTCGTGTTGTTAATTAGTTATCGATCTACCTACGAGGGATTGAAACCGCATGCCCATGACGATATTTGCCGGAGTGGAAAGGATGTTGCCAAACTACCTACGAGGGTTAGGGATCGAGTGTGAACGTAACCCTAACCGACCCAAGAACGTGCTAAATCACAACGCTTCTGGCAAACGCGGTTCGATCAGATGGAGAAGTAAAATTAACGAGGTCCTATTCATAAAGATGGATTTATTTCGTGAATCGAAAATGTCGTCGATGTCCGGTAGGGGAAAAATCCCCGGGGATCGACGACATTTTTGTACCCGCTGGATTCCTTGATATCATGGGAAAAACGGAAAAAAGGAGTTGTGGAAAGGCGGGTTTTCGTGTACCTTAAGGAGAGAAAGAAATGCCTTGGTTGTGGGCTTTTTTGGG # Right flank : CCCAGATAGTAGGTGGGTGTATCCTTTAACAATACCGCGTTCGTCTTTTGCTACCAAGGATCAAACTTCAAAAGAGGCCCGTCCAAAACGGCAATGTAGAATCGTTAGGTCCTCCTTTATCATGACGGGAATTTATTTCGGGAGGCGAAATGGTCGTCGATGTCCGGTAGGGGAAAAATCCCCGGGGATCGACGACATTTTTGTACCTACTGAATTCCTTGATAGGACGGGGGAAAGCGGGAAAAGGGAGTTGTGGAGAGGCGGATTTTCGTGTACCTTAAGGAGAGAAGGAAATGGCTTGGTTGTGGGCTTTTCTGGGGTTACCAATCTACCTATGAGGAATTGAAACGTAACGGCTACTCGCTTTCCGTTGCGCCACTTCTCCACTTGTTACCAATCTACCTATGAGGAATTGAAACAATGCCTGGGTAATCAGCAACGCCGGAATAAGGTTAGTTACCAAGCTACCTATGAGGAATTGAAACTCCTGGCCGTCGCTG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACCAAGCTGCCTACAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 10 24817-25311 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOWF01000015.1 Paludifilum halophilum strain DSM 102817 NODE_15_length_46106_cov_29.6119_ID_2688, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 24817 30 100.0 40 .............................. GTAACGGCTACTCGCTTTCCGTTGCGCCACTTCTCCACTT 24887 30 100.0 36 .............................. AATGCCTGGGTAATCAGCAACGCCGGAATAAGGTTA 24953 30 96.7 36 ........G..................... TCCTGGCCGTCGCTGTTGGATCGGTTGGCGTCCTCC 25019 30 100.0 36 .............................. AAAGTATCCGATCTGTTTCCCGTCGGCTTGACACGC 25085 30 90.0 42 ....TTG....................... TCGTCCCACTCGCTGATCTTGTCGATTCGACATCCTGATTCG 25157 30 86.7 36 ....TTG.....T................. CCATAAACCACCCCCTTGTGGACGGTGGCTTTTTCT 25223 30 93.3 30 ......G..........A............ CCCGGAAGACGAAACCCCCGCCAACTTCCC 25283 29 80.0 0 .GCG.-G..........C............ | ========== ====== ====== ====== ============================== ========================================== ================== 8 30 93.3 37 GTTACCAATCTACCTATGAGGAATTGAAAC # Left flank : AAAAGGCCACTCGGACCCGTTACCAAGCTACCTACAAGGAATTGAAACCTTCGCATCTTCGTAGGTGAATTTCATCTTAGTTCTCGTTACCAAGCTACTTACAAGGAATTGAAACTCCAGGCTAACGAACCAGCAACGGAACCAACAACCAGGTTACCAAGTTGCCTACAAGGAATCGAAACCCAGATAGTAGGTGGGTGTATCCTTTAACAATACCGCGTTCGTCTTTTGCTACCAAGGATCAAACTTCAAAAGAGGCCCGTCCAAAACGGCAATGTAGAATCGTTAGGTCCTCCTTTATCATGACGGGAATTTATTTCGGGAGGCGAAATGGTCGTCGATGTCCGGTAGGGGAAAAATCCCCGGGGATCGACGACATTTTTGTACCTACTGAATTCCTTGATAGGACGGGGGAAAGCGGGAAAAGGGAGTTGTGGAGAGGCGGATTTTCGTGTACCTTAAGGAGAGAAGGAAATGGCTTGGTTGTGGGCTTTTCTGGG # Right flank : CAATTCCGTCTCTCTTCTTGCAATTCGTCAATTCCGGTTACTGATCTACCTTACCCATCCCGCATCCCCCTCATAAAAGCCTTTCATCTGTTGCCTAACCCATATAACGCACCTCAATACCGCTCCTTGAGCGGTTTTTTGTGGCCGGATTTCTAACTTCCGGTACTCTTATCTTATCGGAAGTTAGAAGGGCGGGAGGATTTTTTCTAAAGTAGAGGGGGGTTAGTCGTTAAACCGGGGATGGGGGACGATGCTGTTCTGTGAGGGGTGGGAGTGGTGTTTCGCTTCTTTGAACTTCCCGTTGAAACGGGTGAAGCGGCAACGGATGATATGGATCGGGTGAGAATCTTCATTCAGGAATATGTAGTCCTGGTCATGGGTGGTGTTGGTTGCCTGACTGGCGTTGATTTGGTAAAGTTGTCCGCAGGTCTTGATGGATCGTAAAAAGGATATTTTTTGGTTCGGCTTAAGGAAGGGCCTCAGGAGGATGACATGGATCA # Questionable array : NO Score: 8.61 # Score Detail : 1:0, 2:3, 3:3, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACCAATCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 26441-26736 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOWF01000006.1 Paludifilum halophilum strain DSM 102817 NODE_6_length_280241_cov_31.5123_ID_2670, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 26441 30 100.0 36 .............................. TGCTCAATTTCATTATATGATATCATCGATATCATT 26507 30 100.0 35 .............................. GAAATAGAGATGAAAATTTCGGAAAAAGGAGATAT 26572 30 100.0 39 .............................. TTGAGGGAAGTTCTTTGATTTCCATTTTTCTGGCTCCAC 26641 30 86.7 36 .......AG.......CA............ CTGATTCCGCCTCTCGGGCTTGCTCCAGCGGTTCGA 26707 30 70.0 0 ...A....A.......CA.AAT.C.....T | ========== ====== ====== ====== ============================== ======================================= ================== 5 30 91.3 37 GTTTCTAGTCTACCTATGAGGAATTGAAAC # Left flank : CTATGAGGGATTGAAACTGTATTGTCTCCGATATGTCTCCGGGGTACAATTGGGTTACTAAGCTACCTACAAGGAATTGAAACATGTCGCTGTGATTCGAAGTTGTAACGTTTTCGTTTTAGGTTTCTAAGCTACCTACAAGGAATTGAAACCTGATTCCGCCTCTCGGGCTTGCTCCGGCGGTTCGAGTTACAGGCTACCTACAAAATACTGAAATCTGACACTCAACTTACCTTTCTCCAGTCGAACACCGGATTTCTACCTCCGACTAATCTTCAACTCCGAGGCAGTTGCTAGACCCCTGCCGTATATAAACTTTTCGTGCAACGAAATTGTCGTCGATGTCCAGTAGGGCAAAAATCCCCGGAGATCGACGACATTTATCAAACCAGTGAATCCCTTGTTCTCAAAGGGAAAAACAGAAGAAAGCATTGTGCTGAAGCGAATTTTTAGGTATCTTATGGATAAAGAGAAATGCCTTCGTTATGGGCTTTTTTGGG # Right flank : TCTGACACTCAACTTACCTTTCTCAGTCGAACATCGGATTTCTACCTCCGACTAATCATCAACTCCGAGGCAGTTGCTAGACCCCTGCCGTATATAAACTTTTCGTGCAACGAAATTGTCGTCGATGTCCAGTAGGGTCAAAACCCCCGGGGATCGACGACATTGACAAAACCGCTGAATCCCTTGTTCTCAACGAGAAAAGCGGAAAAAGGCATTGTACTGAGGCGGATTTTTGGGTATCTTATGAAGAGAGGAAAATGGCTTCGTCATAGGCTTTTTTGGGGTTTCTAAGCTACCTACGAGGAATTGAAACTAAGATTCATGAGTAAGGGAACAAAATCCCCGAAAAGTTTCTAAGCTACCTACGAGGAATTGAAACTCAGAACACCCTGTCAGACGTCTCAAGGTTGGTCTTCCTGGTTTCTAAGCTACCTACGAGGAATTGAAACATATCTTTATACCCCTCGTAACTGGAGGGGTCGAGGGTTTCTAAGCTACCT # Questionable array : NO Score: 8.62 # Score Detail : 1:0, 2:3, 3:3, 4:0.56, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAGTCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 2 27019-27514 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOWF01000006.1 Paludifilum halophilum strain DSM 102817 NODE_6_length_280241_cov_31.5123_ID_2670, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 27019 30 100.0 36 .............................. TAAGATTCATGAGTAAGGGAACAAAATCCCCGAAAA 27085 30 100.0 40 .............................. TCAGAACACCCTGTCAGACGTCTCAAGGTTGGTCTTCCTG 27155 30 100.0 36 .............................. ATATCTTTATACCCCTCGTAACTGGAGGGGTCGAGG 27221 30 100.0 35 .............................. CGATCCGATCAGTTTTTTGCCGAGAGGTCCGAACG 27286 30 100.0 39 .............................. ATTTCCAGCCGACGGATTTCTTTTCGACAACGGACACAA 27355 30 100.0 35 .............................. TCCCCACGGGTTGCCTTCTCCAAGCGGTCATATTC 27420 30 100.0 35 .............................. ATCACGTCCATCACCCGCCAGACGACGATCACGGT 27485 30 90.0 0 ....T...T........A............ | ========== ====== ====== ====== ============================== ======================================== ================== 8 30 98.8 37 GTTTCTAAGCTACCTACGAGGAATTGAAAC # Left flank : CCTATGAGGAATTGAAACGAAATAGAGATGAAAATTTCGGAAAAAGGAGATATGTTTCTAGTCTACCTATGAGGAATTGAAACTTGAGGGAAGTTCTTTGATTTCCATTTTTCTGGCTCCACGTTTCTAAGCTACCTACAAGGAATTGAAACCTGATTCCGCCTCTCGGGCTTGCTCCAGCGGTTCGAGTTACTAGACTACCTACAAAATACTGAAATCTGACACTCAACTTACCTTTCTCAGTCGAACATCGGATTTCTACCTCCGACTAATCATCAACTCCGAGGCAGTTGCTAGACCCCTGCCGTATATAAACTTTTCGTGCAACGAAATTGTCGTCGATGTCCAGTAGGGTCAAAACCCCCGGGGATCGACGACATTGACAAAACCGCTGAATCCCTTGTTCTCAACGAGAAAAGCGGAAAAAGGCATTGTACTGAGGCGGATTTTTGGGTATCTTATGAAGAGAGGAAAATGGCTTCGTCATAGGCTTTTTTGGG # Right flank : CCTGGCATTCAACTGACCTTTCTCCCTATCGACACAGAGTTATCCACCTCCGACCAATCATCACTCCGAGGCAGTCACTAGAAGCGTTATGACAAAGCTCCTGTTCGGAAGGGTGGGGTTCCACACGGAGTGCCTTTGGCTTGTCAGAACAACGAAACGGAGTGTGGAACCCCACCCCGACCGACCAAGGATGTGCTAAAATCACAACGCTTCTAGACCCCTGCCGTATATGAACTTTTTTCGTGTAACGAAACGGTCGTCGATCTCCAGTAGGGCAAAATCCCCCGGGGATCGACGACATTGACAAAACCGCTGAATCCCTTGTTCTCAAGGGGAAAATCCGAAGAAAGCATTGTACTGAGGCGGATTTTTGGGTATCTTATGGATAAAGGGATATGGCTTCGTCATGGGCTTTTTTGGGGTTACTAAGCTACCTATGAGGGATTGAAACTCTCGGAGGGAGAGCAGATCGCCTACTCGTAGCCCAGTTACTAAGCTAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAAGCTACCTACGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 3 27935-28576 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOWF01000006.1 Paludifilum halophilum strain DSM 102817 NODE_6_length_280241_cov_31.5123_ID_2670, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 27935 30 100.0 36 .............................. TCTCGGAGGGAGAGCAGATCGCCTACTCGTAGCCCA 28001 30 100.0 41 .............................. TCAGCCCATCACGGGCCAGCCCTTCGACTTCCTCTAATCTA 28072 30 100.0 42 .............................. CCTGGCTAACTCTTTTTCCTGACTCCGATCCTTTTGTTTCTG 28144 30 100.0 38 .............................. CGGAAGAACAACTGAAGGCCGCGAAAGAAGTAGTTGAA 28212 30 100.0 36 .............................. TCTCGGAGGGAGAGCAGATCGCCTACTCGTAGCCCA 28278 30 100.0 38 .............................. CAGGGTCAGCTCTGCTGTTCCGGACGAGGTGAGAGGAT 28346 30 100.0 36 .............................. TGGGCGTCCACTTCCGACCAATGCTTGATCCGAAAG 28412 30 93.3 35 ...T.................A........ CCAAGTGTCCGCACGGCGGAAATGGCCTTTTTTCG 28477 30 86.7 40 ...T.C..........C....A........ TTCAGGGAGGCGGAATGATGGATAGCATCAGGGAATATCC 28547 30 83.3 0 ...T.CG.........C....A........ | ========== ====== ====== ====== ============================== ========================================== ================== 10 30 96.3 38 GTTACTAAGCTACCTATGAGGGATTGAAAC # Left flank : ACGAGGAATTGAAACATCACGTCCATCACCCGCCAGACGACGATCACGGTGTTTTTAATCTACCTACAAGGAATTGAAACCTGGCATTCAACTGACCTTTCTCCCTATCGACACAGAGTTATCCACCTCCGACCAATCATCACTCCGAGGCAGTCACTAGAAGCGTTATGACAAAGCTCCTGTTCGGAAGGGTGGGGTTCCACACGGAGTGCCTTTGGCTTGTCAGAACAACGAAACGGAGTGTGGAACCCCACCCCGACCGACCAAGGATGTGCTAAAATCACAACGCTTCTAGACCCCTGCCGTATATGAACTTTTTTCGTGTAACGAAACGGTCGTCGATCTCCAGTAGGGCAAAATCCCCCGGGGATCGACGACATTGACAAAACCGCTGAATCCCTTGTTCTCAAGGGGAAAATCCGAAGAAAGCATTGTACTGAGGCGGATTTTTGGGTATCTTATGGATAAAGGGATATGGCTTCGTCATGGGCTTTTTTGGG # Right flank : CCTGGCGTTCAGCTGACCTTTCTCCTCTGTCGACGCTGGGTCTCCACCCACGACAAATCATCAACTCCGAGGCTGTCGTCAGATCCTCGTCGTGTACTTTTTTCGCGTAACGAAATAGTCGTCGATGTCCAGTAGGGCAAAAACCCCCGGGGATCGACGACATTTATCAAACCGCCGAATCCCTTGTTCTCAAAGGGAAAATCCGAAGAAGGCATTGTACTGAGGTGGATTTTTGGGTATCTTATGGATAAAGGGATATGGCTTCGTCATAGGCTTTTTTGGGGTTTCTAAGCTACCTACGAGGAATTGAAACGTAGGAGTAGCCTCGATACATCCCTTACCGAACTCGACGTTTCTAAGCTACCTACGAGGAATTGAAACCTCACCTTGAAGGCGAAGTCTTTCAAATTGTCTTCAGTTTCCGAGCTACCTATGAGGAATTGAAACACCCGTGAACGTAATTCATCACGGCTTTTCTCGTAGTTTCTAAGCTACCTACG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACTAAGCTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 4 28859-29154 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOWF01000006.1 Paludifilum halophilum strain DSM 102817 NODE_6_length_280241_cov_31.5123_ID_2670, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 28859 30 100.0 38 .............................. GTAGGAGTAGCCTCGATACATCCCTTACCGAACTCGAC 28927 30 100.0 36 .............................. CTCACCTTGAAGGCGAAGTCTTTCAAATTGTCTTCA 28993 30 90.0 35 .....CG.........T............. ACCCGTGAACGTAATTCATCACGGCTTTTCTCGTA 29058 30 96.7 36 ....................A......... CTGATTCCGCCTCTCGGGCTTGCTCCGGCGGTTCGA 29124 30 76.7 0 .......G.........A.AAT.C.....T | A [29128] ========== ====== ====== ====== ============================== ====================================== ================== 5 30 92.7 36 GTTTCTAAGCTACCTACGAGGAATTGAAAC # Left flank : CTATGAGGGATTGAAACTGGGCGTCCACTTCCGACCAATGCTTGATCCGAAAGGTTTCTAAGCTACCTATGAGGAATTGAAACCCAAGTGTCCGCACGGCGGAAATGGCCTTTTTTCGGTTTCCAAGCTACCTACGAGGAATTGAAACTTCAGGGAGGCGGAATGATGGATAGCATCAGGGAATATCCGTTTCCGAGCTACCTACGAGGAATTGAAACCTGGCGTTCAGCTGACCTTTCTCCTCTGTCGACGCTGGGTCTCCACCCACGACAAATCATCAACTCCGAGGCTGTCGTCAGATCCTCGTCGTGTACTTTTTTCGCGTAACGAAATAGTCGTCGATGTCCAGTAGGGCAAAAACCCCCGGGGATCGACGACATTTATCAAACCGCCGAATCCCTTGTTCTCAAAGGGAAAATCCGAAGAAGGCATTGTACTGAGGTGGATTTTTGGGTATCTTATGGATAAAGGGATATGGCTTCGTCATAGGCTTTTTTGGG # Right flank : TCTGACACTCAACTTACCTTTCTCAGTCGAACATCGGATTTCTACCTCCGACTAATCATCAACTCCGTGGCAGTTGCTAGACCCCTGCCGTATATAAACTTTTCGTCAACGAAATTGTCGTCGATGTCCAGTAGGGCAAAAACCCCTGGGGATCGACGACATTTATCAAACCGCCGCATCCCTTGTTCTCAAGGGGAAAATCCGAAGAAGGCATTGTACTGAGGCGGATTTTTGGGTATCTTATGGATAAAGGGATATGGCTTCGTCATGGGCTTTTTTGGGGTTTTTAGTCTACCTATGAGGAATTGAAACCCAAAGGTAATTCGTAACTTGAAAAAGAACCTTGATGCATGTTTTTAGTCTACCTATGAGGAATTGAAACATAATGTCGACGTACTCTTCCTCTCGCTCAATCCCGGTTACTAAGCTACCTATGAGGAATTGAAACCGCGTCATCTCCGGCGTTATTTCCGGTGCTACATCGTTTCTAAGCTACTTAT # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:0, 3:3, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAAGCTACCTACGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 5 29436-29666 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOWF01000006.1 Paludifilum halophilum strain DSM 102817 NODE_6_length_280241_cov_31.5123_ID_2670, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 29436 30 100.0 40 .............................. CCAAAGGTAATTCGTAACTTGAAAAAGAACCTTGATGCAT 29506 30 100.0 36 .............................. ATAATGTCGACGTACTCTTCCTCTCGCTCAATCCCG 29572 30 86.7 35 ...AC..AG..................... CGCGTCATCTCCGGCGTTATTTCCGGTGCTACATC 29637 30 83.3 0 ....C..AG....T....T........... | ========== ====== ====== ====== ============================== ======================================== ================== 4 30 92.5 37 GTTTTTAGTCTACCTATGAGGAATTGAAAC # Left flank : CTACCTACGAGGAATTGAAACCTCACCTTGAAGGCGAAGTCTTTCAAATTGTCTTCAGTTTCCGAGCTACCTATGAGGAATTGAAACACCCGTGAACGTAATTCATCACGGCTTTTCTCGTAGTTTCTAAGCTACCTACGAGAAATTGAAACCTGATTCCGCCTCTCGGGCTTGCTCCGGCGGTTCGAGTTTACTAGGCTACCTACAAAATACTGAAATCTGACACTCAACTTACCTTTCTCAGTCGAACATCGGATTTCTACCTCCGACTAATCATCAACTCCGTGGCAGTTGCTAGACCCCTGCCGTATATAAACTTTTCGTCAACGAAATTGTCGTCGATGTCCAGTAGGGCAAAAACCCCTGGGGATCGACGACATTTATCAAACCGCCGCATCCCTTGTTCTCAAGGGGAAAATCCGAAGAAGGCATTGTACTGAGGCGGATTTTTGGGTATCTTATGGATAAAGGGATATGGCTTCGTCATGGGCTTTTTTGGG # Right flank : CCTGGCGTTCAACTGACCTTTCTCCTCTGTCGACGCTAGGTCTCCACCTACGACAAATCATCAACTCCGAGGCTGTCGTCAGACCCTCGTCGTGTACTTTTTTCGCGTAACAAAATAGTCGTCGATGTCCGGTAGGGTAAAAACCCCCGGGGATCGACGACATTCATCAAACCGCCGAATCCCTTGTTCTCAAAGGGAAAAACAGAAGAAAGCATTGTACTGAAGCGAATTTTTAGGTATCTTATGGATAAAGAGAAATTCCTTCGTCATGGGCCTTTTCGGGGTTTCTAAGTTACCTACGAGGAATTGAAACTCCGGTGGTTCAACAGATTAAGACCAGGGAAGACCGGTTTCTAAGCTACCTACGAGGAATTGAAACTATCAAGGGATTGCCCGGTTCCGTGGAACTGATGGGTTTCTAAGCTACCTACGAGGAATTGAAACCTCTCGTATATGTATCCTACCCGGGCCAGCCCCTTCTGTTTCTAAGCTACCTATGA # Questionable array : NO Score: 8.48 # Score Detail : 1:0, 2:3, 3:3, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGTCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.90%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 6 29949-30242 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOWF01000006.1 Paludifilum halophilum strain DSM 102817 NODE_6_length_280241_cov_31.5123_ID_2670, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 29949 30 96.7 36 .........T.................... TCCGGTGGTTCAACAGATTAAGACCAGGGAAGACCG 30015 30 100.0 35 .............................. TATCAAGGGATTGCCCGGTTCCGTGGAACTGATGG 30080 30 100.0 37 .............................. CTCTCGTATATGTATCCTACCCGGGCCAGCCCCTTCT 30147 30 96.7 36 ................T............. CTGATTCCGCCTCTCGGGCTTGCTCCGGCGGTTCGA 30213 30 70.0 0 ...A...GA........A.AAT.C.....T | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 92.7 36 GTTTCTAAGCTACCTACGAGGAATTGAAAC # Left flank : CTATGAGGAATTGAAACCCAAAGGTAATTCGTAACTTGAAAAAGAACCTTGATGCATGTTTTTAGTCTACCTATGAGGAATTGAAACATAATGTCGACGTACTCTTCCTCTCGCTCAATCCCGGTTACTAAGCTACCTATGAGGAATTGAAACCGCGTCATCTCCGGCGTTATTTCCGGTGCTACATCGTTTCTAAGCTACTTATGTGGAATTGAAACCTGGCGTTCAACTGACCTTTCTCCTCTGTCGACGCTAGGTCTCCACCTACGACAAATCATCAACTCCGAGGCTGTCGTCAGACCCTCGTCGTGTACTTTTTTCGCGTAACAAAATAGTCGTCGATGTCCGGTAGGGTAAAAACCCCCGGGGATCGACGACATTCATCAAACCGCCGAATCCCTTGTTCTCAAAGGGAAAAACAGAAGAAAGCATTGTACTGAAGCGAATTTTTAGGTATCTTATGGATAAAGAGAAATTCCTTCGTCATGGGCCTTTTCGGG # Right flank : TCTGACACTCAACTTACCTTTCTCAGTCGAACATCGGATTTCTACCTCCGACTAATCATCAACTCCGTAGCAGTTGCTAGACCCCTGCCGTATATAAACTTTTCGTCAACGAAATTGTCGTCGATGTCCAGTAGGGCAAAAACCCCCGGGGATCGACGACATTCATCAAACCGCCGCAATCCCTTGTTCTCAAAGGGAAAAACAGAAGAAAGCATTGTACTGAGGCGGATTTTTGGGTATCTTATGGATAAAGAGAAATGCCTTCGTCATGGGCTTTTTTGGGGTTACTAAGCTACCTATGAGGAATTGAAACCCATATAAAAGGAATAGATTTCGTCTGTTCCTTCCCTTTGTTACTAAGCTACCTATGAGGAATTGAAACGGAGGTGCTCGTCACGGAAGTCCTTACGACCGTTGGGTTTGCAGTCTACCTATGAGGAATTGAAACATCCTGGCCGAAGTCAAACAAACAGAGGATGGATGGAGGTTTCCTAGCTACC # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:0, 3:3, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAAGCTACCTACGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 7 30526-30891 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOWF01000006.1 Paludifilum halophilum strain DSM 102817 NODE_6_length_280241_cov_31.5123_ID_2670, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 30526 29 100.0 40 ............................. CCATATAAAAGGAATAGATTTCGTCTGTTCCTTCCCTTTG 30595 29 100.0 36 ............................. GGAGGTGCTCGTCACGGAAGTCCTTACGACCGTTGG 30660 29 82.8 39 G.TTGC....................... ATCCTGGCCGAAGTCAAACAAACAGAGGATGGATGGAGG T [30668] 30729 29 82.8 36 ..T.CT.........CA............ TTCATGTCTGAAAACCGGAATCCTTCTTCACCACAG 30794 29 82.8 40 ..T.CT.........CA............ AAGTGTATCCCAATGGCGGCAGACCATACCGCTTCCCCTG 30863 29 93.1 0 ..T............C............. | ========== ====== ====== ====== ============================= ======================================== ================== 6 29 90.2 38 TTACTAAGCTACCTATGAGGAATTGAAAC # Left flank : ACCTACGAGGAATTGAAACTATCAAGGGATTGCCCGGTTCCGTGGAACTGATGGGTTTCTAAGCTACCTACGAGGAATTGAAACCTCTCGTATATGTATCCTACCCGGGCCAGCCCCTTCTGTTTCTAAGCTACCTATGAGGAATTGAAACCTGATTCCGCCTCTCGGGCTTGCTCCGGCGGTTCGAGTTACTAGACTACCTACAAAATACTGAAATCTGACACTCAACTTACCTTTCTCAGTCGAACATCGGATTTCTACCTCCGACTAATCATCAACTCCGTAGCAGTTGCTAGACCCCTGCCGTATATAAACTTTTCGTCAACGAAATTGTCGTCGATGTCCAGTAGGGCAAAAACCCCCGGGGATCGACGACATTCATCAAACCGCCGCAATCCCTTGTTCTCAAAGGGAAAAACAGAAGAAAGCATTGTACTGAGGCGGATTTTTGGGTATCTTATGGATAAAGAGAAATGCCTTCGTCATGGGCTTTTTTGGGG # Right flank : CCTAGCGTTCAACTGACCTTTCTCCTCTGTCGACGCTGGGTCTCCACCTACGACAAATCATCAACTCCGTGGCAGTTGCTAGACCCCTGCCGTATATAAACTTTTCGTCAACGAAATTGTCGTCGATGTCCAGTAGGGCAAAAACCCCCGGGGATCGACGACATTCATCAAACCGCCGCATCCCTTGTTCTCAAAGGGAAAGGCGGGAAAAGGCATTGTACTGAGGGGGATTTTTGGGTATCTTATGGAGAGAGGAAAATGGCTTTGTCATGGGCTTTATTGGGGGTTTTCAAGCTACCTACGAGGAATTGAAACCTCTTCCCACCATTCTTTGTCTATGATTATATCCGCCTGTTTTCAAGCTACCTACGAGGAATTGAAACTTCGATTGGGTTGCTAATTTTGCTGGTTGTGTACTGTTACTAAGCTACCTATGAGGGATTGAAACATCGAGTTCGGAGGTTTTCCATTCGTTAATCTTCAGTGTTACTAAGCTACCT # Questionable array : NO Score: 8.46 # Score Detail : 1:0, 2:3, 3:3, 4:0.51, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTACTAAGCTACCTATGAGGAATTGAAAC # Alternate repeat : AGCTACCTACAAGGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.87%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 8 36237-36738 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOWF01000006.1 Paludifilum halophilum strain DSM 102817 NODE_6_length_280241_cov_31.5123_ID_2670, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 36237 30 100.0 38 .............................. TTGTGTGCATGGCACGGCACTGCCGCACCCCACTACCA 36305 30 100.0 35 .............................. TCAACATCATATTCAAGGGCCTTTTTGGAAAGAAG 36370 30 100.0 38 .............................. CTTGATGACTGCGATTCTCTTGAACTTCATGTTCATCG 36438 30 100.0 36 .............................. TAGTCTGTCTGTTCATAGTTCCCCCCTGGTTCCTCA 36504 30 100.0 38 .............................. TCGATCATGATCTTGTGCAGATTGTTCGTTGATGCCGC 36572 30 93.3 40 ....CT........................ TGGACGTCCATCATGCTTCCTCCTCCAAAAAGACCCGCTC 36642 30 90.0 37 ....CT..........C............. CCCACAATCAGCATCATGTTCCGTAATTTCTGCTGTG 36709 29 90.0 0 ....C...-.......C............. | G [36715] ========== ====== ====== ====== ============================== ======================================== ================== 8 30 96.7 38 GTTTGCAGTCTACCTATGAGGAATTGAAAC # Left flank : GCTGGGCGGAGCCATCATCCTGCTTCTAGCCGGATTACTGATTCCAATCATCAGTTAATGCGTCCGCTGTCAGAGGAAGAAACATTCGAACCGGCTCGAATCCTGAGAGAGAAAACCACCCGGTATCAAGCCATGTGGAAAGGAATCCAAATCATAACCGACTCCCTCTACGTGAAGGAGTCGGTTATGATTGCCCCCAAATATGTCTGAAGTACAATTTTTAAAATCAAACCGGGAAAAACATCCCAATGGGCCATTTTCCAAACCTTTTCGTAGACAAAAAGCCCAAGCAAGAATCGATCCATGCTGGGCATTTATTTCGTATGACGAAAGGGTCGTCGATGTCCAGTAGAGCAAAAACCCCCGGGGATCGACGACATTTATCAAACCGGTGAATCCCTTGTTCTTAAAGGGAAAAACGGAAGAAAGCATTGTACTGAGGCGGATTTTAGGATATCTTATGGATAAAGAGAAATGCCTTCGTCATGGGCCTTTTTGGG # Right flank : CCTGATTCCACCTCTCGGGTTTGCTCCGGCGGCTCGAGTTACTAGACTACCTACAAAATACTGAAATCTGACACTCAACTTACCTTTCTCAGTCGAACACCGGATTTCTACCTCCGACTAATCATCAACTCCGAGGCAGTTGCTAGACCCCTGCCGTATATAAACTTTTCGTGCAACGAAATTGTCGTCGATGTCCGGTAGGGTAAAAACCCCCGGGGATCGACGACATTGACAAAACCGCTGAATCCCTTGTTCTCAACGGGAAAAGCGGAAAAAGGCATTGTACTAAGGCGGATTTTTGGGTATCTTATGGATAAAGGGATATGGCTTCGTCATGGGCTTTTTTGGGGTTTCCGAGCTACCTACGAGGAATTGAAACTGGATGAGGCGCCACTAACTCAATTTGGGGTGATCCGTTTCCGAGCTACCTACGAGGAATTGAAACTTTGAACGGTTCTCTTCAGTCTGACTGTGAAGATGTGTTTCCGAGCTACCTACGA # Questionable array : NO Score: 9.10 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCAGTCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 9 37087-37703 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOWF01000006.1 Paludifilum halophilum strain DSM 102817 NODE_6_length_280241_cov_31.5123_ID_2670, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 37087 30 100.0 36 .............................. TGGATGAGGCGCCACTAACTCAATTTGGGGTGATCC 37153 30 100.0 36 .............................. TTTGAACGGTTCTCTTCAGTCTGACTGTGAAGATGT 37219 30 100.0 36 .............................. TCGGCTTTCTTGGACAATTCAGCAGGGGTAATGTTG 37285 30 100.0 40 .............................. GTTAAATTCTGGATCATTGAAACCCTCCTTACGGCTTCAC 37355 30 100.0 43 .............................. TCGTTATTGTCTCTACTAGTTTCCGAGCTACCTACGAGGAATT 37402 30 100.0 37 .............................. CCATCAACGACCCCGGAAATTCCGGTGGCAAAAAAGG 37470 30 100.0 35 .............................. TAGCTGATCTCCTGCGTGCTTCCTTCTGCGTACTC 37535 30 100.0 38 .............................. GTTCATTCATCCTCATCTCTCCTAGGTAGGTCCGGATT 37603 30 90.0 37 .....TA.........T............. GCGGAACCAGAAACCAAAACGCCTTTCCGAGTGTTTG 37670 30 76.7 0 .....TA.........TA......CC...A | CC,AC [37686,37689] ========== ====== ====== ====== ============================== =========================================== ================== 10 30 96.7 38 GTTTCCGAGCTACCTACGAGGAATTGAAAC # Left flank : ATGAGGAATTGAAACTGGACGTCCATCATGCTTCCTCCTCCAAAAAGACCCGCTCGTTTCTAGTCTACCTACGAGGAATTGAAACCCCACAATCAGCATCATGTTCCGTAATTTCTGCTGTGGTTTCCGAGCTACCTACGAGGAATTGAAACCTGATTCCACCTCTCGGGTTTGCTCCGGCGGCTCGAGTTACTAGACTACCTACAAAATACTGAAATCTGACACTCAACTTACCTTTCTCAGTCGAACACCGGATTTCTACCTCCGACTAATCATCAACTCCGAGGCAGTTGCTAGACCCCTGCCGTATATAAACTTTTCGTGCAACGAAATTGTCGTCGATGTCCGGTAGGGTAAAAACCCCCGGGGATCGACGACATTGACAAAACCGCTGAATCCCTTGTTCTCAACGGGAAAAGCGGAAAAAGGCATTGTACTAAGGCGGATTTTTGGGTATCTTATGGATAAAGGGATATGGCTTCGTCATGGGCTTTTTTGGG # Right flank : AACCACCATTTCCACTACCCCCACCCATATCGGCCTTCATTGATCGCCCAGCCAACCCGGGTTCTCCAGACTGTCGGGCTGACAGCCGATTCCATAAACCTCCCCACCCACCAAAAAAGCCAAGCGGAAAAATCCGCCTGGCTTTTTTTGATCGCTTTTTGGTTCGTTTTACCGGGCGCCGGTCGATTCCGGCCAGCGGTCCGGTTTATTGTTTATGGAACACGGCGTTGGACAGGTAGCGGTACAGGTAATCCGTGTGACCGCGGAATCCGGGTTCCAGTCCGATCAGGGTGACATCCTGTTCCTTCTCCTGGACGATGACGGGTTGTCCTTCGGCCTGATCCTTCCCTTTCCAGTGACCGGAGTGGAAGAAATCCCCGTCAGAGTAGGAAGCGGCCACCGTCGCCCCGCCGGTGTCGGAGTACCAGCCCGGGCGATAAACAAAGCCCAAGTCCCGGTCTCCGTAACCGGCGGTCAGTTCCGTATCACCGTTCTCCACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGAGCTACCTACGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 10 140467-139434 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOWF01000006.1 Paludifilum halophilum strain DSM 102817 NODE_6_length_280241_cov_31.5123_ID_2670, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 140466 29 100.0 38 ............................. GGTGTGGGCGCTGACCGAATTAATGCTTGGAAACGAGT 140399 29 100.0 37 ............................. ATAGTATTATTCGACTAAACCCTCTGATTTTCATGCA 140333 29 100.0 38 ............................. ATGGTCACGTCATCGGTTCTGAGCCGTCCGGTATTGAT 140266 29 100.0 39 ............................. ATAAATTTCGGCTTCCACTTCCTCCGGCACGAGGATTTC 140198 29 100.0 38 ............................. CTAGTTAAGGTTATGGTTTCGCCGCCACCCGTTTTGGT 140131 29 100.0 36 ............................. TCGGGTGGATAATCGTATGCCAACAATATATACATC 140066 29 100.0 40 ............................. GGAACCATCTGAAACCGGCTCAACCGTTTCAATAGTTCGT 139997 29 100.0 39 ............................. TTTCTGGTACAATTCAAAATGAACTTGAGAGGAGGAATG 139929 29 100.0 36 ............................. CGTTATAACAATCGGCGGATGTATCCTCAAAAACCA 139864 29 100.0 38 ............................. GAGTTAAGGGAGTGTTTTTAATTGGAGGCATTAGAATG 139797 29 100.0 40 ............................. TCACTCATCCGCACCTCCACCGCGCCTTTAACAGTACAAG 139728 29 100.0 36 ............................. TTGAGATTCCCGAGCTGGCCCCGTACATTAACATCG 139663 29 100.0 37 ............................. GGTTTTGAAATCGAAACAACATTCACCGTTGGTGTTT 139597 29 100.0 40 ............................. ATTGGCAGTCCGTGCGCCGCGAGGGAAAATATTGTCCTTA 139528 29 100.0 37 ............................. AGGACCAACCGGAAACTCGCAAGGAACGGCTCGTTCC 139462 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ======================================== ================== 16 29 99.8 38 GTTTTAGATGAACGTAGTGGGATATAAAG # Left flank : ATGTGTATAGGGGACCGGTGAAAGGGGGGATCGGGGTGTACGTGATTATCACCTACGATGTTGGTGAGAAGCGGGTGCACAAAGTTTGCAAAAAGCTGAGAGAATATTTAACATGGACTCAGAATTCGGTGTTCGAAGGATCCATCGGCAAAGGCAAACTGACCCGGTGTATGCACGAGTTGGATGGCATCATCCATGCGGATGAAGACTCCATTTATTTGTACCAAGTGAACAATCCGAATCACATACAAAAGAAAGTGTACGGGCAGGAAAAAAGTTTTGACGATTTGTTTTTGTAGTGAATCAAGCATGTATGAAATCAGTGGTTTGCAGTAAACCGGATTGTGGGAGAAATCTCCGCAATCCCTCGTCCGACAACGAATAGAAAAGAGTTCCAACTTGTCCGGGGAAAAAGAACTTCAGCTTTACTGCAGGTCGTAAATCAAGTAGAATATCAAAAAAACCGTCATGAGCGGGATGATCGTTTGTCTATTTAAGGG # Right flank : GAACCCAATTTGACACACCCATAATCGTTCCCGTTCCGGAAGAGGATCTGGAACGTTTCCAAAAATTATACACTTGGTATCGCTGAATAAAGGCTGCTAACCCCATATATCTGGATGACTGAAATGGAGGCCTTACTTCCTTCGATAATGACCAGAATGCGTGGAATGGTTAAAGCCTTCGATTCATCAGATCCATGAGCGAAGGATTTGCTTCCTTTGAAGAATGCAAATAGATTAATAAGGAATCAATATTAAGAACCTAAATGCCAGAACGAACAGTGGATGTGGGCAATCGTCGCTCTTTTTTCCTCCCTTCGGTTGTTTCGGTTGACTTGGGTCTTCTTTCGACAAATGGTTTTCTTCATATACGGGCAAAGAGGCCTCGTTAACACCGAAAAGTCAGTCACAACAAGCTTCTATCTGAACTTTCCCAAGATAAAAACAAAAACCCCGTGTCAACGGGGTTTTCGAGGCTGCTGACAAAGTATGTAGGTCAGCAG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGAACGTAGTGGGATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA //