Array 1 293653-292444 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARXI010000006.1 Listeria booriae strain FSL L7-0360 NODE_6_length_355927_cov_34.236324, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 293652 30 100.0 36 .............................. CACATCTTCTACTTCCCAATCGTAAATAGGGTACGC 293586 30 100.0 36 .............................. TAGCCTCAAAAGCGACAGATAGGCCGCCGCGAAGCA 293520 30 100.0 36 .............................. TTGGCTTTATCGCCTAGTTCCTCAACGACACTAATT 293454 30 100.0 35 .............................. CCGGCACCAGCTAGACCTCCCGCCCATGCCATAAC 293389 30 100.0 36 .............................. GACGAACATAATGGCGTAACTATGTATGATGAGGGA 293323 30 100.0 35 .............................. GTGCATGACCTCCTAGCACAAGGGCGAATGTTCAT 293258 30 100.0 37 .............................. AATAGGACTTATTGATACGGAACACCGGCGTGCATCA 293191 30 100.0 36 .............................. ACGCTTTCCAGCCTTATCAATCAAAGCTGGGATACC 293125 30 100.0 35 .............................. TTGACATTTTCGGCTCCTACATGCGTAGGTATTTT 293060 30 100.0 35 .............................. TTCAAGGACATTTCGGGAGTTTACGATACGGTGTT 292995 30 96.7 35 .................A............ GTCTGATCCCTAGCAATGAATTTAGCTTTATTCTC 292930 30 96.7 35 .................A............ CTACACCTACATTTGCTAACATACTTTTACTTTCT 292865 30 96.7 35 .................A............ TTACTTACGTTAAATGCGCTGTTTACAATGACGGA 292800 30 96.7 35 .................A............ CGATTACCTCGCGTAGCTTTTAAATGCTTTACAAA 292735 30 96.7 35 .................A............ GACGGCACATATAAATACGCGGCTGTATCTAAAAC 292670 30 96.7 37 .................A............ ACGCTGAAAACAGAATGAAGGAGCGCATTTATCGTAA 292603 30 100.0 35 .............................. ATCAGATACTAAGTTGATTACAACCCCTTATTATA 292538 30 100.0 36 .............................. AATTCTGACGGGTCTATCAATGAATCTGTAATACTA 292472 29 83.3 0 .................A....-.C..G.C | ========== ====== ====== ====== ============================== ===================================== ================== 19 30 98.1 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : GGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGTTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACGGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTCGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGGAAAGAGGGGATGGTTGATAAGTGGTGTTTGGAAAGCGAGGACCAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTAAGCGTTGGTATGCAAGGGTTTGAGTCTATTTTCGAAGTTCGGGTTGTAAGGTTAGAAAGTGGGAATTTAGGATTGGGTTGTCGGTCGACAGATTTGGATGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : TAGATTGCCCACAGATGCAGTGTTTCTATCCATTTTTTATAGAATCAATTATCATTCAACAATCCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGAAGAAAATTGGATTTATTGGTGTTGGGGTTATGGGCGCTAGTATGGTGCGGAATTTGATGGCGGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCGATCTGGCATGAGACACCGCAGGATTTGGCGCCTCAGGTCGATGTGCTTATCACGATGGTTGGATATCCAACTGATGTGGAGGAGCTTTATTTAGCGGAGGACGGGCTGTTGACTACGCTTCGATCGGGAGCTATTGCTATTGATATGACGACTTCTTCTCCGAATCTTGCGAAACAAATTGCTGAAGAGGGCAAGGCGCTGAACATTGCGGTGCTGGA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : GTTTTTATCTAAGTAATATGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 293722-293495 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARXI010000001.1 Listeria booriae strain FSL L7-0360 NODE_1_length_622387_cov_35.605576, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 293721 30 100.0 36 .............................. TCCAAAGCCGGTAAGTCGTTCGCCTTAATTGAAATG 293655 30 100.0 34 .............................. TCTTTCATCTACTCCTTTAATTTGAATTTATTTA 293591 30 100.0 37 .............................. ATATGTCGGTAACGCGGCCCCTGCGATAGTATTTACT 293524 30 96.7 0 .............C................ | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 99.2 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATCTTGATTTACGACATAGCAATGGATAACGGCGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACCCATGTGCAAAAATCGGTATTCGAAGGCGAAATAACCCCAGCACTACTTGCCAAATTGCGAATGGAATTAGACCAGTATATTCGTGGCGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTATGTAGAAAAATCTGTCGACCCCGAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTATGTATTGGTACTAAAGAGATTAAGCCTATTTTCGGAGTTTGGGTTGTAAGGTTTGAGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : TCGCCTTCCCCCTCATTTTTTACAAATCTGAATCAACTGTTTTTATCTAAAAATAAAAGATACTAATATAGTTAATATCGTGGTATACTAACCGCGAAGGGAATAAGGAGGCATTTTGTATTCTCCCTGACTATACTAAGGAAGCGGAAGGAGATAATTAGTTTGAATCACAAAACAGTAAAACTTATCACTCCTGTCATGGGACTCTCCCTGCTACTCTCAACTCTAGCTCCTGTTATTCCAGTGTCTGCGAACGAAACAAATGAAAGCGCTGTAGAAGAAGCTGCAAGCCAATATGCGTTAACAGATGTAGATATAGGTATAGCCAATCAATATATTACGCTCAATGCAACAAGTAATAATTTTAGCGTCTCCCCCTCTATTTCAAATGTCCTTTCTAGTGAAAAAGTGAACATTATTAATGCATTCGTTGCTACTGCTAATACTTTTATAAAAACTGCCAAAATGGATATATCGATGCCCGTTTACGCTATTGATCC # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 420903-421664 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARXI010000001.1 Listeria booriae strain FSL L7-0360 NODE_1_length_622387_cov_35.605576, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 420903 36 100.0 30 .................................... GTAAAAGATAATAATTCAGGTTCCGTTGTT 420969 36 100.0 30 .................................... TAGCAGGCTAAATAATGCTCTTGCATCTTC 421035 36 100.0 30 .................................... CAAAAAAGGGTTCTAGGTATGTTTCGTGTG 421101 36 100.0 30 .................................... TTTCCAGACGTGAAAAGAACGTTGTCATCT 421167 36 100.0 30 .................................... AGTAGGTAAAGAGGTTATGATTAGTACAGA 421233 36 100.0 30 .................................... ATGCGCTAAAAAAATCTGGCGACACAGCAA 421299 36 100.0 30 .................................... CCGAGGTCAAGCGGCTATGGGTGCAGGTAA 421365 36 100.0 30 .................................... TGAAATTCGATGCTAAAGGAAATAGATCGT 421431 36 97.2 30 ...........................G........ GTGTCTACAGTAAAAAATACGGCGCAAATG 421497 36 100.0 30 .................................... GCTTGACCTGTACTTCAAGCAACAAGGCTG 421563 36 100.0 30 .................................... TTGTTTGTGCTTGGGCTTACCCTTTGTCTT 421629 36 88.9 0 ...........................T.T...TA. | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 98.8 30 GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Left flank : ACTGTACAGATATCCCCATATCGAATATCTTCGAAAAATCATCAACACTTGGCAGTTTCTTTGTACTAATAATTTCTTCGCCTTGAAGTGTGATAGGTAACGCCTTGCTACCATCTTTCTTCAATAAACGAATAACCTCATCATTTTTGAGAAACGGTTCTAGCGAGTCTTCCAAGTAAAAAGCATCAAGAACTATTTGCTCCTCCTTTACGAAGAGATAACTTTCTTGGAACTCCTTGTCAAAAATAGAATTGAAAAGCTCTAGCTCTACTTCATCAGACTGTTTTAGACTGTCTCGTGAGTCGAGGAAAAAAGTAAGTTTTATCATTTTTGCACTCCTAACTGCTTTCGAAACTAAAATAGGATACATCATTGTTTTGCAAGTAAATACTGCTTCATTGACTACCTATTGGATGAGCATCACTTTGAATGCTCTATTTTCTATGGCTACTAGCCTCCGATTAATTAGAAATAACTTATCCCACTTATCCACAGTAGAG # Right flank : CTTTGTTCTTTTATTAATAATTGAAATACCCTACGTCACATCTCCAATAACGCCTTCACTATACTACAATACTCTTCTGAAACTTGATTCGTTTCAATATAACTATCATTTAATTTTTTCCCACTTAAATGTCTCAATTTTTTTGGTTTTAGGCTTGCTATTACCAATCTGTGTTTATTGTTTTTCAAGTTAGCAAACACAACACACATACCATGCTTATCTAAAAGAACGATTAATGATTTAGTAACTGCGTTCTTTAATTTGCGATCATATTTAAGCATTTCTCTTAATTTCTCGAATAAATACAATAACGAATATTTATTTTTTGGTGATAAATAATTTAAATGCGCTATACGATTTCTGTCATTTCTCTTAGAAACAAAAAAGTTCTCCCCTACCATGAATTTATGAAGTTTTTCAATATGTTTTGGCCATGTTTTCCCGCCTATTTTTTTCCAATATTTTTCAGTAGTATTAATCCAGCTATCCACTCTTTCGGT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 50933-50507 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARXI010000008.1 Listeria booriae strain FSL L7-0360 NODE_8_length_182746_cov_37.320804, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 50932 30 100.0 35 .............................. ATCTTTGCTTTCGTGTTGTTAATTCTGTCTTGTAA 50867 30 100.0 35 .............................. ACGATTCTAGCTGTTCCGTAACATACTGCTTTAAC 50802 30 100.0 34 .............................. AAACTTCGTATCATTAGCCATATTAGAACACCAC 50738 30 96.7 38 ...A.......................... GCAACAAAGACTGTAGAAGCAAAAAATATGACAGAAGC 50670 30 96.7 36 ...........................G.. TTTGTAGCACCAGATAGGGTGTTTATTTGGGGTTAG 50604 30 93.3 37 ....C..........A.............. GAAATTCCGTTTGCCAGACCTTGACCAACGAATTCGT 50537 30 80.0 0 ...............A....C...A..GCC | G [50513] ========== ====== ====== ====== ============================== ====================================== ================== 7 30 95.2 36 GTTTTTATCTAAGTATTGTGTAATGTAAAT # Left flank : GACGCTGAGCGCAACATCAGACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTTCTGATTGCCGTCGGATTTGCAGGCACAACCAAATCAGTGTTTGAAGATTTCCAAGTAGCAAAAACAAACCGTCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGAGTCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAAGGGACATCGACAGATTTTGTTTTTGCTTAGGGGGAGAATGGATTAGGATGGTTTTCGAGGAGGCGAAAAAAATAAGTAAGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAAGAGTTGAGAGGGTACCT # Right flank : CATAGACGAATGTCTACATATTTCCTGAATATATGAGGCTAGCTTAAGTATTAAAAATAAAAGCCGATACTTAAAGTATCAGCCTCATAAATTTAATTTATTCATTTAAGAAAAATGTCTTTGTGGAATTCCAGTTTGTTTATTTAATAATTTTGTTCGTTTGCTATCTTTGTAAACATACAAATCATTCCTGTACTGGTAATTATTGGCGTATTGTTTAACTGTAATATAAGCGGTCTTATTTTTAAACTCGCTTATAACACCATACACGGAAAATGCTGCGGCTGTCCAACCAAGACCTGGAACCAAACCTAGTCCGATTAACACGAGTGCTGCACTTGCCTTACTAACTTTTGTCATTGTAGCTGTAACATTTCTGCTTGTTACTAGTTTCATTGTGCTATTTGAACTTGCTTTTAATAATAGGGGAGTTGAGCTATTTTCTTCAGATACATTGAATGTACCGACTTTTTTTCCATCTACTATGATATTCGTTGTGA # Questionable array : NO Score: 2.87 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTATTGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //