Array 1 2795-7 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE375823.1 Serratia marcescens AB42556419-isolate1 Contig157, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2794 28 100.0 32 ............................ ACGATGCCGTCGGTGTTCGCCGAAACGACGCT 2734 28 100.0 32 ............................ TGTGCGCAGATCCCTAACTGGATTTATGACGG 2674 28 100.0 32 ............................ GGCGGCCGTCAGCTGCCCGTCGCTGCTTGCGC 2614 28 100.0 32 ............................ GTCCCCCTGCCAGGCACTCATGAGTCGACAGC 2554 28 100.0 32 ............................ AAAATCAGCCCAGATTGTTGCATATCAGGCAC 2494 28 100.0 32 ............................ TGCCAGCGTCACGGCGGGCTTCGACCTGTGCG 2434 28 100.0 32 ............................ AACGAGGGTAAATTCGTCGCCAAAATGAAGCA 2374 28 100.0 32 ............................ TTTCACTGCGCCGCCCTTCACGCCCCGGATGG 2314 28 100.0 32 ............................ TATGGCTATCTCAACGATCCAAACTTCTTGCC 2254 28 100.0 32 ............................ AGAAAGCCGGAGAGCTGGCCGACGATCAGGAC 2194 28 100.0 32 ............................ ACTCTATGCGGCAAACCTCACCGACCCGCATG 2134 28 100.0 32 ............................ TTTGCTCCAGGCAGCTCCAGGTGCATGCGTCA 2074 28 100.0 32 ............................ ACAGATGCGTTATATGGGAACCCGTTCGCGGT 2014 28 100.0 32 ............................ TGATTCACAGCGGGCAAAATGCTGTCGGGTGC 1954 28 100.0 32 ............................ GCGAACAAATAACCTACGTTTCCAGGATTGAT 1894 28 100.0 32 ............................ AGTTATCGATTGCCGAGCGCGCCGCCTTTGGT 1834 28 100.0 32 ............................ CCACTGAGCAAAGCGTGGGTCATTGACGTAAT 1774 28 100.0 32 ............................ TTCACAATCTTTCCTTTCTCGTCGCGGTGATA 1714 28 100.0 32 ............................ TGCCGTATCGATGTCGGTCAGCACCACCCGCC 1654 28 100.0 32 ............................ TGTCCGAGGGTATCGATTGCACCCGAGAGGGA 1594 28 100.0 32 ............................ TTACTGGCCTTCTCCAGTCTTTGAGCCTTTTC 1534 28 100.0 32 ............................ AGCGCGTCGCGGACGTGATGACCAAAGGTTTC 1474 28 100.0 33 ............................ ATGCTCATTTTCGCGGGCAAACGGCGCAAATCG 1413 28 100.0 32 ............................ GATCAGCGGTAGGGATGAAATCGCCCGTTCCG 1353 28 100.0 32 ............................ AGTAAGTGGCTTTGGTAGGTGGTGCGATTAAC 1293 28 100.0 32 ............................ GACGTCGGCGCGGATTTCGGCATGGAGGCGCC 1233 28 100.0 32 ............................ ATCAGGGGCATGCAACATGGCAGAGGATAAAC 1173 28 100.0 32 ............................ ATAGTTACCCCTTGCCGAGTTAGAAAATGACC 1113 28 92.9 31 .......................GA... TGTTTTTTTTCTCAAACCCCTGAGCGGCTTT 1054 28 100.0 32 ............................ TGGAACGCAGTAGTGCGGGGGTCAAATACGAT 994 28 100.0 32 ............................ GGACTTCAGCCTGTGCTAAGAGCGTGACGAGC 934 28 100.0 32 ............................ TCCTGAGGTGTTTGACCGCGTCTTCGGATTTG 874 28 100.0 32 ............................ TACGCCACCGCCTGCAGCGGCTCCTGCCGATA 814 28 100.0 32 ............................ TGTATCGAACATCGTCAATGTGACGGTAAATA 754 28 100.0 32 ............................ GAAACTTCGCCATTCCATCCGGCGCCGTCGGT 694 28 100.0 32 ............................ AATGATAATTTCTGCCGTGCCGGCATCCTCTG 634 28 100.0 32 ............................ AGGGAATCGGTTGATATCGCGCTGGTACGCCA 574 28 100.0 32 ............................ AGCGACCGGGAACCCGTTCGCGATCGAAACCC 514 28 100.0 32 ............................ ATAGGGATCGTGGCGCGCGTCACCAGCTGATA 454 28 100.0 32 ............................ TTGGGGTGACGGCTACGCCGGGACGCGCTGAC 394 28 100.0 32 ............................ GTGCAGACAGCACTGGCACGATCACGTTAACC 334 28 100.0 32 ............................ ATCATGGAAAGCCTTTATTCTAAAAAGAAATA 274 28 100.0 32 ............................ TCGGCCTGTTCCCACGTCAGCAACCATGTGAA 214 28 100.0 32 ............................ TAAGCAGCAAAATAAACCTCAACAGTCGAATG 154 28 100.0 32 ............................ GATGGATACCATTGCCAATCAGGTGGCCAGCA 94 28 100.0 32 ............................ TGGCGAACGTGGACTATTACGGCGACGCCGCT 34 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 47 28 99.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATCCTGTTTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGCATTGTCGCTGGCCGGATACGGAAAGCGCGTTCCAGGTCTACCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAGTCGCTTTTAACGACCGGCAATAGATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGCTGGCAATTCAGGTCATCAGTGGTGTCTATGCGTCTGAGTGGGACGGATGGTGATACCAAACAGGGAACCTATAATTCCCCCTAAAATGCAAAGATGTCACCTTACCCCGTTCTTGGTTGCCGAACCCTTTTTTGAGTGATACTTTTAATTTATTGATTTTAAATCATATTTTTAATCGCTTTAAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : AACAAAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [8.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 75085-73978 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE375838.1 Serratia marcescens AB42556419-isolate1 Contig50, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 75084 28 100.0 32 ............................ ATACAGTCGGAGATCAACCCGGCGGCGAACGG 75024 28 100.0 32 ............................ ATAACTGACGCTTAGCGGGTCAGTCTTCCACC 74964 28 100.0 32 ............................ TCAGTGTTGCCGGTGCCGCTTGCTGCCGCCAG 74904 28 100.0 32 ............................ TGATGGCTCAAGCAATGAGCATAAAGGTTGGC 74844 28 100.0 32 ............................ ATGATCGGCCCGCTGCCCAAGCGCATGCGCGC 74784 28 100.0 32 ............................ ATAGCGCAGTCCTTCACGCGATTAGCGTATGC 74724 28 100.0 32 ............................ GTATGCACTGTGGACTCCAGGTCATCGAGGCT 74664 28 100.0 32 ............................ AGAAAGGCATTCCGCCCTGGAAGATTCACCAC 74604 28 100.0 32 ............................ ATTCGGACGCGCTGCTGAGCGCCCAGGCGAGA 74544 28 100.0 32 ............................ AATAGGTTGGCTCGTAAAAGTGAATCGTGTCC 74484 28 100.0 32 ............................ CGGGTGCGTGGGCGCCCATCATTAGCTAAAAC 74424 28 100.0 32 ............................ TGGCACCGATTGGCAGGATATTACCGGCACGT 74364 28 100.0 32 ............................ ACGAGCATGGATAGTCGGGTGCGCGTGTTCGT 74304 28 96.4 32 ..........................G. GCCCCGCCAGCGCCAGCAGTGCCGGATGACTA 74244 28 100.0 32 ............................ TGGCTAATGACCCAACTTACAGCACGGCAAGC 74184 28 100.0 32 ............................ AGGGAAATCCAGGCCGATGAGGAAACGCGCAC 74124 28 100.0 32 ............................ ACGGAGGTGGCCGGCAGCTTGATGGAGAAGAT 74064 28 100.0 32 ............................ TTCGGCGGCCGGCCGCGAGCGTCTAGCCATCA 74004 27 82.1 0 .........T...C.A....T..-.... | ========== ====== ====== ====== ============================ ================================ ================== 19 28 98.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGCTGACGGCGCTGGGGGGATTCGACTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCTCATCCAGGCTGTGCCTGCTGAGACGGCGTTTCGTACCGTCAGCAGAGTTCAGGTAAAGAGTAGCGTTGAGCGTATACGCCGCCGAGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTTATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCCGCTTGTTCCTGAAACAGGGTCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCTCCGCTACGGTACCTTGGTTTTAACCCTCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGTTAAACCGAGGGATTTGACTGTTGTTCTTTAATAATCAGTTTGTTAGAGGCTATTTTGCTCA # Right flank : TAGAAGGGATAAAACTTTACCGACACCTGTTAACCAGGAAGCAAATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGCTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAGCGTCAATTCCCCTTTGCCGCGCAGCGCCTTGGCGCCTTTGCCGGCCTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGAGAGTGGGGAAAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCCTACCGCTTTACCCCTTTTTACCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCATC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 83897-83566 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE375838.1 Serratia marcescens AB42556419-isolate1 Contig50, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 83896 28 100.0 32 ............................ ATCGGCCGAGCGGGCGTGAAAACGGTAGGAAC 83836 28 100.0 32 ............................ GATAAGGATAAGGCTCGACGCCGTGCAGCCGC 83776 28 100.0 32 ............................ ATTACTGAACACCCACCAGCGGAGCAGTCAAA 83716 28 100.0 32 ............................ TTCGCTTCCAGCTCTGCCAGTAGTTCGAGAAC 83656 28 100.0 32 ............................ ATGGGAATGATGCCAAAATTTGCCAGTCCGGC 83596 28 96.4 0 ....................A....... | G,A,A [83569,83573,83575] ========== ====== ====== ====== ============================ ================================ ================== 6 28 99.4 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCGA # Right flank : AAGTAATATGTATTTGATACATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTTTCTGATTGATGAATATTGACTCGGTTGCAACGGATTTCCCTGGAAAAACGTGGTAGAACGGTGGTGTCGCCTGCATTGACATTCATCGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTTTCCCCCTCTGAATTAAAAACAATACTGCACTCGAAACGAGCAAACTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGACGAAGGAAAGCAGTCTCTTTACTGGAACATCCCTATTGCCAACACTACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAGTTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGCGGTGGGACACCCCTATTTGCTGCTAACGAAGTGGAAGTCGCC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //