Array 1 68819-71100 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMVL010000001.1 Weizmannia coagulans strain BSD2780061689_150309_A3 NODE_1_length_199115_cov_36.951, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 68819 32 100.0 34 ................................ CGCCGACAAATACAAATGAATTTCACTCGTCAAC 68885 32 100.0 33 ................................ ATCAAGCGGAAAGCACGTTGGCAAATGGGCGGT 68950 32 100.0 33 ................................ TGGAACAGTTAACGTCAGACAATTTACAGGGCT 69015 32 100.0 34 ................................ CCAAACGATCAGGGATAAAGTATGGGATGAGTGG 69081 32 100.0 36 ................................ ATCTAATTCAACTAATGAACCGTCATCGTATCTGCT 69149 32 100.0 34 ................................ TTCCCGCTGCTGGTTGATCAGCTTTTTCTGTTCT 69215 32 100.0 35 ................................ AGACGACAAATACGACTTACTTTGGTACAAGTTAT 69282 32 100.0 35 ................................ TACATCTGGCACATACACGTTAAAGCTGGACGAGC 69349 32 100.0 34 ................................ CGGGTCAAAATCCAAAAGGTTTAAAGCATCGCTA 69415 32 100.0 36 ................................ TTCTAGCGTTATAACCGGGCGGTCTGGCATTTTGCC 69483 32 100.0 33 ................................ CGCGCTATGCTACTGGAATAGGGACATTGCCAC 69548 32 100.0 35 ................................ CTAAACCGTGACAAGCAAAATCCGAAACACGACAA 69615 32 100.0 34 ................................ CCAAGCTCGATATAATAATCAGCAAAAGCCTGCT 69681 32 100.0 34 ................................ GTAGACAATGCGTTGTAATTCCGAGTCAAAAAGT 69747 32 100.0 34 ................................ GAACTTAACGACGGAATCGAACTCGACAGCGACG 69813 32 100.0 33 ................................ GCACCATGCTCATCGGGCAAAGGAAAACATCCT 69878 32 100.0 34 ................................ GTTGCAGAACAAGGCTTTGATGGCATCGATTATA 69944 32 100.0 34 ................................ CCGTCATCAATTTTGCACCGGATTGTGCATCCTG 70010 32 100.0 34 ................................ AGGCAGATCACCCGGATCTTTTGGACCGGGAAAT 70076 32 100.0 33 ................................ AGTTAAAAATTGTCGGTTTTTGCCGTCCGTATC 70141 32 100.0 34 ................................ TATGCGCAGCTGGCCTGTCTCTACCGCCTGCATT 70207 32 100.0 35 ................................ ATCAAGCCACTCAGGCGGGTTCACATGCGCGGCAC 70274 32 100.0 34 ................................ TTTCTTTGCCATTTTTTCATTCCTCCTTGTTGTT 70340 32 100.0 36 ................................ GCCACTACCACCACATTCCGGGTCAATGAATGGGTC 70408 32 100.0 33 ................................ TGATCAATGGTGCTCACTCTATAAAATCACTCG 70473 32 100.0 36 ................................ GCCAGTACATCGGTCACGTCGGTTATGACGTCTATC 70541 32 100.0 34 ................................ AAGACGCCTACCAGTTAATTGCGGTCGATACGGA 70607 32 100.0 33 ................................ CTGTTTGAATGCACGGGACTGACTGAATACTGG 70672 32 100.0 33 ................................ CGGTGCATCCTTGAGTGCTTCAATATGGTGCAC 70737 32 100.0 34 ................................ TGCCGGAGGACCTGGATACAGCTATCCAGCATTA 70803 32 100.0 34 ................................ TGCAATGGCAGGGAGCCTTAATCTTTCCCACTTT 70869 32 100.0 34 ................................ CATTCCTCCATGCTCCACCCCGTCCACGCTTGTA 70935 32 100.0 35 ................................ CTTTAAATACGCGGAAACATCCCCATAGTTTGCAG 71002 32 100.0 35 ................................ CTCCTCCAATATGTATAGATCGTCAACCTTCACCC 71069 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 35 32 100.0 34 GTCGCTCCCTACATGGGGGCGTGGATTGAAAT # Left flank : AGATGAGTATCCTCCTTTTCTGTGGAAGTAGGTGGAAAATTTTGCTTGTTGTCATTACTTATGATGTGAGTACTTTGACCGGAGCAGGGCAGAAGAGGTTAAGAAAAGTAGCGAAAGTTTGTCAAAACTATGGCCAGCGTGTCCAGAATTCCGTTTTTGAGTGTTTCGTTGATGCAACACAATTTGCCTCTTTGAAGATTGAACTGTCTAATATTATTGACCCAGATGAAGATAGCCTGAGATTTTATCAGTTGGGAAACAACTATAAAAATAAAGTAATGCATATCGGGGCAAAACCATCTTTGGATTTAGAAGACCCCTTGATCTTTTAGTGCGAAGGTGTAGTGCACACGATTTTCCCGTGTGTTCGCACCAATATGCTAACCAATATTTTACATATATTGGTTAAATGTGGAAAAATAGTCCTTTGTTTATCAGAGGAAATGGCGAAATTTGGTTGTTTTAAAAACGTACATTCGCCTTTTTGACCAAATTCCGCT # Right flank : TCGTTTGCTGTATTTGCGATCCCTAGGATCATCAAGTCGCTCCCTAATGAATACTTGCTGAGCAAACCAGACAAAGCCTTGTATCTGGTTCGCTCAGCCGCAAATCTGGTTGATGCCGCCTTCTTTGTTCCTTCCATCAACCTTAGACCCGAAAAGTGGCGCTGAACGCGCAGATACCAGTGACAAACCCTTTTTGTAAAGTAACTCTTGTTTTTATAGTTCCTGGAACCGGGACCAGGGCTTTCCTTATTCAGCAGCCCCCGATTATGTATTTCTGTCATCCTCGTCGTCCAGTTCCCTGATCAAATTCCAAGTCTGATAAATCCGGTTTGCCATTTTCTCAGGATCTTTCAGCATCATTTGGTATAAATCCGGCTCATGGCTCAACGTTTCAAGCAGTTTCTTTTCCGGATTACTGACCGCTTCATTTGTCTTCAGGCCGGCATGGTTGGTAAGGCCCAAAAGATAATCAATTGAAACTTTCAACACTTGCGAAATTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTACATGGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.00,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 14229-13997 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMVL010000060.1 Weizmannia coagulans strain BSD2780061689_150309_A3 NODE_60_length_14306_cov_30.1479, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================= ================== 14228 24 87.5 28 ......G.C.T............. CACGCTGCTTCCGGGTCCAAAATGTCTT 14176 24 100.0 28 ........................ CACGTTACGTCTGGATCCGAAATGTCCC 14124 24 100.0 29 ........................ AAAGGATCGCGTTTGGGCCCAAATATCCT 14071 24 95.8 27 ..........T............. GGAGTCGCGACTGGATCAAAATGTCTT 14020 24 83.3 0 ......GT.....C.C........ | ========== ====== ====== ====== ======================== ============================= ================== 5 24 93.3 28 TTTGAACCTGCCAAAAGGACAAAA # Left flank : TATCGTCGTTGAAAACAGTGTTGCCAAGAGTTGATAAAATGACTCCTTCTTTTTACACAATTATACGGACTTAATCC # Right flank : CAAAACATTACTCCGATGAAGGACAATTTGACGGTTCACTTTTGTCTATCCTGAAAAATATGCGCCAGCTGATTTTCATTCTACTGTTGGTGCGCGTTCACTGCAGCATGGGCGTCTAATTGGATCTTCCAATTAGACAAAACACGCTCGGGTTCCGGGGCTTTTGTCCAATTAGAGGCGGCTCGGTCATCGTTCCCTATGAAGAACAGTTCGCCGATTCCCGGCCTCGCATTTTGTGCCCGTTCCCCTCGTACGAGCGTTTTTTCTCCGGCTATAAAAAAAGGCGGGGAATCCTCCCCGCAACTTGTCAGCAGAAGCTTGCACCGACAATAATTAACAGAATGAACAAAACAACGATCAATACAAATGTGCTGCCGTAGCCGTAACCACCGCCGTAACCGCCATAGCCGCAGCCGCCGCCATAACCGTATCCAAACATGTTTTTCACCTCACTTCTTGTATTACACTATACAATATGTAAGGTGCAGGCATTCGGTATA # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.66, 5:0, 6:0.25, 7:-0.02, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTGAACCTGCCAAAAGGACAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //