Array 1 87976-88160 **** Predicted by CRISPRDetect 2.4 *** >NZ_AIJQ01000003.1 Thermus parvatiensis strain RL Contig03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 87976 36 100.0 40 .................................... TCCTCTGGGACTTCAGCCGGCACCTTCCCCTGGACCCTGC 88052 36 100.0 37 .................................... GTTCGGGCCTCTGCCGTTTTGAGGAGAGGAGGAGGAS 88125 36 97.2 0 ..........R......................... | ========== ====== ====== ====== ==================================== ======================================== ================== 3 36 99.1 39 CTGCAACGTAGCCAAGCTGTGAAGCTTGGATGTAAC # Left flank : CCCCCGTCCCCAGGTAGGGGTAGYGCCACAGCCTCAGGGGAAGCCGCTTCCCCAGGGCCGCCGCCYTCGGAAGGACCTCCACGGGGTCCAGGAGCCTCCGGCCCCTGAGCAACTCCCCGTAGCGCCGGGCCGCCCGGGCCACCCGGGCAAGCCGGGGGGAGGCCYCCTYCGCCAGGCGSGCAAGCGCCTCCTCCCCCTGGCCGGAGGCCTGGGCGAGCARGAGGAGGGTCCTCACCGGGCCCTCGAGGGCCGCGGCCAGCCCCTGGGGGTCCTTCGGGGCGAGGGCCTCCCGCACCGCCTGCACCAGCAGGCGGCGGGCCCGGTAGGGGGAGGCCACCAGGAGCCCCCCGTCCCTTAGGAGCTCCCGGGCCAGCCCGGCCAGGGTGCGGTAGGGAACCCCCAGCCTGCGGGCCACCGCCCGGTTGGGGGTGACGTGTATCAGTCCTGGGTCCTCGGCGCGCACACCTTACCTCCTTTCTTCGCTATTTTCGCCTGCCTTC # Right flank : CGGCCCAGCGCCCAGGCGAAAACCCCTTGTTTCAATCCTCACCGGCCCTTTCGGGCCGGTGCAACAGGGGTTGACCAAGGGGAGGTCCTGAGGGGGGCCGGGGTTTCAATCCTCACCGGCCCTTTCGGGCCGGTGCAACGGTAAGCGGTGTACGTCTTCTGTGCCTCCTGGGGAGGTTTCAATCCTCACCGGCCCTTTCGGGCCGGTGCAACGAGCCTTCCCTCCTCGTCCGTGCGGGGCCAGAGGGTGTTTCAATCCTCACCGGCCCTTTCGGGCCGGTGCAACCGGACTGCCTGGAGGGTGTTCACGGGCCGAAAGTAGTTTCAATCCTCACCGGCCCTTTCGGGCCGGTGCAACCTCGGCTCTCTCCCGGGAGAGCACACCCCCTTTGGGGTTTCAATCCTCACCGGCCCTTTCGGGCCGGTGCAACCCCCCTCGGGCTTGGCCTCCTCCTCCAGGGAGCGGAGGTTTCAATCCTCACCGGCCCTTTCGGGCCGGTG # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCAACGTAGCCAAGCTGTGAAGCTTGGATGTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.10,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 88889-88188 **** Predicted by CRISPRDetect 2.4 *** >NZ_AIJQ01000003.1 Thermus parvatiensis strain RL Contig03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 88888 37 100.0 37 ..................................... CCCATGACTGAGGTTGATGCCCTCTTGCGGGCGCTTA 88814 37 100.0 40 ..................................... CTGGAAGAGACCTGCTGGGCGCAGTCCATGCTCGTCTGGG 88737 37 100.0 37 ..................................... CTCAAGAAGGACGCGCCCCTCGCGGTTTAGCTCCCTG 88663 37 100.0 37 ..................................... CTCCGCTCCCTGGAGGAGGAGGCCAAGCCCGAGGGGG 88589 37 100.0 36 ..................................... CCCAAAGGGGGTGTGCTCTCCCGGGAGAGAGCCGAG 88516 37 100.0 35 ..................................... TACTTTCGGCCCGTGAACACCCTCCAGGCAGTCCG 88444 37 100.0 36 ..................................... ACCCTCTGGCCCCGCACGGACGAGGAGGGAAGGCTC 88371 37 100.0 36 ..................................... CTCCCCAGGAGGCACAGAAGACGTACACCGCTTACC 88298 37 100.0 37 ..................................... CCCGGCCCCCCTCAGGACCTCCCCTTGGTCAACCCCT 88224 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 10 37 100.0 37 GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC # Left flank : GCRTTGCGGAAGGCGGCGAGGTGGTAGGGGTTGACCAGGGCCACSMGGAGGCSSTTTTCMGCCAGGAGSRMGAGGAGGGGGAGGTGGTAGGSGCRSGTGGGCTCCAGGGCGACCCAGGCGGGGTTGTGGTGGGCGAGGGCGGCGAGGAGGGCTTGACGGCCTTCYGGGGWGTTGGGGAAGCGGAGGCGGGTGGGTTTGGGGGAGTTGGAGACSAGGGCCAGGTCCAGGTGGGMTTTGCTGACGTCAATYCCGGCGAAGGTCATGGGCTCTCTCCTTTTTGGTAACCTGAGGGAGGTGGCCACCCGACCCTGTGGGCCTTCCATGTGGATGCGGTCTTTSACGACCGGGATACTGTGCGGCGGGGAGGCCGGGGRGGGTGGCTACCSATCAATCCCGCGGGCGTGGMMGCCCGGCAACCYGGGCGGTYGGGCCTCCCTCAGGGGGCAAGATACATGKGAKCWAGGCCAMKCCMCTTSKGGCATACTGGGCGACCAGCTGGA # Right flank : AAGGGGTTTTCGCCTGGGCGCTGGGCCGTTACATCCAAGCTTCACAGCTTGGRTACGTTGCAGSTCCTCCTCCTCTCCTCAAAACGGCAGAGGCCCGAACGTTACATCCAAGCTTCACAGCTTGGCTACGTTGCAGGCAGGGTCCAGGGGAAGGTGCCGGCTGAAGTCCCAGAGGAGTTACATCCAAGCTTCACAGCTTGGCTACGTTGCAGGAAGGCAGGCGAAAATAGCGAAGAAAGGAGGTAAGGTGTGCGCGCCGAGGACCCAGGACTGATACACGTCACCCCCAACCGGGCGGTGGCCCGCAGGCTGGGGGTTCCCTACCGCACCCTGGCCGGGCTGGCCCGGGAGCTCCTAAGGGACGGGGGGCTCCTGGTGGCCTCCCCCTACCGGGCCCGCCGCCTGCTGGTGCAGGCGGTGCGGGAGGCCCTCGCCCCGAAGGACCCCCAGGGGCTGGCCGCGGCCCTCGAGGGCCCGGTGAGGACCCTCCTCRTGCTCGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-17.10,-18.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : NA //