Array 1 51117-48261 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEKY01000011.1 Porphyromonas loveana strain DSM 28520 Ga0215711_111, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 51116 30 100.0 36 .............................. AGCCGATTATCGTAGGTGGGCGCATCACTATGGACA 51050 30 100.0 36 .............................. AATTTGCTGAATGCGAACGCTTCGTCTCGCACTCTG 50984 30 100.0 36 .............................. TCATTACTCCTCCTTCAGCATTTCTTGCGCCTCTTG 50918 30 100.0 35 .............................. GCAAGTGGAAGAATGCGGACGGAACAGTCTCAGAC 50853 30 100.0 36 .............................. TAGACGTATCGCTTCGGTGTTGTGGCTTCATGCTCG 50787 30 100.0 36 .............................. GGTAGAAAGCTCTTTACCGTTGTAGTAGCGTTTGTA 50721 30 100.0 36 .............................. ACCTTCTTGAACTCCTCTATCATCAGTTCCTGGATC 50655 30 100.0 36 .............................. TATTTTTTACTGATTGGTTGGTTGTCGTTGGCACGG 50589 30 100.0 36 .............................. AACTGAGCGATGACGAGCGCGCCAAGCAACGCAAGC 50523 30 100.0 36 .............................. GTGATGAGGAACGATTCTACGATGTCGGGATGGAGC 50457 30 100.0 36 .............................. ATGAAAATTAAAATTCTCCGCTGAATTCTGTGATAT 50391 30 100.0 36 .............................. TTTATCGAATCGGAATCGGTAAAGGGATATGCTAAG 50325 30 100.0 37 .............................. TCTATAAGGGTCAGGAGCTGTGCTGACTTGCTTTGTC 50258 30 100.0 36 .............................. TAGAGTATGCAGAAGCCTTGATTGAGGAGCTGAAGA 50192 30 100.0 34 .............................. GTTCCTTCCTGCTGTCAGAGTCAAATATGAAGAA 50128 30 100.0 36 .............................. ATACAACAACCAACCCTTCAATCAATCAGTGAGGAA 50062 30 100.0 34 .............................. AGGAGGGCGCACATATCGCTTACTACGATGTCGA 49998 30 100.0 36 .............................. AAATACAAGCTGACAACGACAACACGCCATCAAGCA 49932 30 100.0 36 .............................. TGTGGTGTCTGGGTCTAATTCTGTCGTAAAACACTT 49866 30 100.0 36 .............................. GTAGTGACCGGATGCGGTTTGTATTGCATGATACCG 49800 30 100.0 36 .............................. GGTGAATCCTACAAGCTCATACTGAGCTTCAGGGAA 49734 30 100.0 36 .............................. AAGCGGCTCAGCACCTCGATAACATCGTCGATCGCG 49668 30 100.0 36 .............................. GTGGTACTTGCTGCATATACAGCGTGTACGCGTACG 49602 30 100.0 36 .............................. TGCGCATTCTCTTCTGCTAACTGCTCATCGTATTCT 49536 30 100.0 36 .............................. TTGAGGTCATCGGTCTGATCAGAGAGGTCGTTGACT 49470 30 100.0 36 .............................. TTTGCCCGGATAGGCCGATAAAGTCTGCCACCGCCT 49404 30 100.0 35 .............................. CAATCTGTCGCTGCCGATCGGCGTCGGCGCAAACT 49339 30 100.0 35 .............................. AGGCCAAGGCTGAAGAGGCGCTTGCGGTCGAAAAG 49274 30 100.0 34 .............................. CATCCTGCAGGCCCGCGACGCCATTGCCGCGGCA 49210 30 100.0 36 .............................. GATGATGTAATTATGTTTGGCGACTACCGTTATCTT 49144 30 100.0 36 .............................. CTTCCGGTGAAGATCCGTCAGCGCGCACAAGATCGA 49078 30 100.0 35 .............................. AACACAGATGATAATACAAGCGGATGGGGAAAGGC 49013 30 100.0 36 .............................. CCACTATCGAGCAGCTGTATCTCAACACCGTATTTA 48947 30 100.0 35 .............................. CGGTTGCATTCCGAGGTTTTTTATTACGCTCTTTG 48882 30 100.0 36 .............................. TCCGCTACATGATGGAGGCTAATCTGATACAGGAGC 48816 30 100.0 36 .............................. TGTGAAGGTGCAAAAAGAGAATAGCGAAATGCGGGC 48750 30 100.0 36 .............................. AGGCTGGACTGAACTCAACTATACTTAATTCAGTAG 48684 30 100.0 35 .............................. ACGAGTATTGGCGTTCTTTGAAATTTTGTATCGGT 48619 30 100.0 35 .............................. TGAAGGGCACAGACTGGGCAGTGTTTGCCCCCGCT 48554 30 100.0 36 .............................. GTAAGAGGACTATCAACGAACTCTTGCAGCCCAACG 48488 30 100.0 36 .............................. CAGCAGGCATAGACGCTATATACTCTGCCTTTATCC 48422 30 100.0 35 .............................. GATGTTGCAGCAGCTGCACATCGTGAGCGAGGAAA 48357 30 100.0 36 .............................. GATATTGCGGGTACCCTTCGTGTTCCTCAAGGGGAA 48291 30 93.3 0 ............................CT | C [48272] ========== ====== ====== ====== ============================== ===================================== ================== 44 30 99.8 36 CTTCCAATTGCACCATATAGGAATTAAAAC # Left flank : TATCTTAGTGTATGACATGGGAGAGAAACGTGTCGGTAAAATGCTGAAACTCTGTAGGAAGTATCTGAACTGGATACAGAATTCGGTCTTCGAGGGCGAACTGTCGGATGTCAAACTTTTAGAGTTGAAGAGCAAGGCTACCAAACTCATGGATAAAGAGGTGGATAGCCTCATCATCTTTGTTTCTCGTCAGGAACGATGGTTGGAAAAAGAAATCCTTGGCAAAGAGCGAGCCTCAACGGATATCTTTCTCTGAATCAGTGCTGTAAGATTCTTTTTGCCAATCTCTGTTCGTCGAAGCCTCTGTTTTATATTTCATTTCCTGAGACTCGAAGGCAAATCGTTCTTTGAAATGATTGATAATCAGCTTTATAGGCCAGTTGTCGTGCTTCACGGTTTTTCTTAGGATTGTACATCGACGACTTTTTGTGTCCTCAAACGATGTCTATCCTATCGCCAATCCCTTTGTACATCAGCAAAATAACATGTACATTTGACCA # Right flank : GCGTAACAAGACAGGAAAGACAAGTGAATGCAAGGCTTCCAATTGCACCTTGAATTTCCATAGTAGAGGTGCTGCATTGTTAAGCTACTTGCATAAGAGTTATGACTTTCGGAGGTTACGGAGTCGGGCACGGTACCATGCAGCTCTGTCTTCGTCCTCCAGCTCTTCGCATAGGGAAATGAGACGCTTCAGGAGGGTGCGATTCTTCGGGTTAATGTCGTCGGCTCTGCGATAGGCTTCGAGGGCTTCGGTCTGATAGCCAAACTTCTCCAGCACTTCGCCGTGGGTGAGGTGGGCATTAAAGTCCATGGGGGCTAAGGTCGTGGCTTGGTTGAGGGCGGTGAGTGCATTCGTGATCTCGTTGAGGCGGGCATAGGCCTGCCCCTTCATCACCAAGACTTCAACATAGTCGGGGTAGAGCGTCAAGGCTTTATCGTAGGAGCGTATGGCGGCGTGAGCATCGCCGGCTTCTGTTATACAGTCGTTGCCCATGAGCACAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCAATTGCACCATATAGGAATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 62248-60968 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEKY01000006.1 Porphyromonas loveana strain DSM 28520 Ga0215711_106, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 62247 47 100.0 30 ............................................... ACAGAGTATAATGATATATAAACGACCTCA 62170 47 100.0 30 ............................................... AAACCGCCACAGCGAACGAAACACATATTC 62093 47 100.0 30 ............................................... CACTTCCTTGTCTTTTAGATCGTCTATTAT 62016 47 100.0 30 ............................................... GCAAACAGGTTGAGCTGATAAAGCTACGCC 61939 47 100.0 30 ............................................... GGTGGGGGTATGTGCGCGGATGGGTTTGCG 61862 47 100.0 30 ............................................... AGTGCGTTAAGACTTGCGTGTTCCGTTTTT 61785 47 100.0 30 ............................................... TGCAAGTAGGTCGTTCCGCTTGCTGTTTGC 61708 47 100.0 31 ............................................... TTGGCGGGTTGAAAATTATCCCTTATGTTTG 61630 47 100.0 30 ............................................... AGGTGCGCTATTCATTGAATAGCGGAAACT 61553 47 100.0 30 ............................................... CATCGATGCCGTTACCAATTCCGACCTGAC 61476 47 100.0 30 ............................................... ATCTATTGCGTACTCAATTTTCAGATATTG 61399 47 100.0 30 ............................................... CTCTGCATACGCTCGACACAAAGAACACCG 61322 47 100.0 30 ............................................... GGAGACAGATTGAAGTCGAGAGTTGATGCG 61245 47 100.0 30 ............................................... AGGCGAGCAATGATCGGCCATTTTGTAAAA 61168 47 100.0 31 ............................................... GCTTCTCAAACAAAATGTTCGTCAAGCCAGA 61090 47 100.0 29 ............................................... TATGTCAATCGTGTCACAGATGAATGTGT 61014 47 95.7 0 ................................G...........G.. | ========== ====== ====== ====== =============================================== =============================== ================== 17 47 99.7 30 GCTGTACGATAACAACAAAGATACTAAATCTGAAAGCTATTCCCAGT # Left flank : TACGATAACAACAAAGATACTAAATCTGAAAGCTATTCCCAGTCTTATTGCACACACGTAGAAAAAACAGAACAGCTGTACGATAACAACAAAGATACTAAATCTGAAAGCTATTCCCAGTTCTGTGTCAAACTCATAGGGAAAGTTGACAGCTGTACGATAACAACAAAGATACTAAATCTGAAAGCTATTCCCAGTCTACTGGAACGTTAAACAACCGCCCCGCCCGCTGTACGATAACAACAAAGATACTAAATCTGAAAGCTATTCCCAGTGCTCGTATGAGCGGGTGGAGTACTTAAACTGCTGTACGATAACAACAAAGATACTAAATCTGAAAGCTATTCCCAGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTGAAAGCTATTCCCAGTGCTCGTATGAGCGGGTGGAGTACTTAAACT # Right flank : AGTCGTCTGTCGTTGATAGGATAGAACTCACGGCATTGGACTTGCGTACGAATGCGCAAGGATAAAAACAGTTATTTTCAAGTTCACGCACATGTATCAGAGTCAGAAAACGGAGTTTTCATGTCCGTGTACATGTCCGCAAGAGCAAAACAGCATTTTCTATGTCGTCGCACGTATGCGACTTGCCCAATAACGGTTTGGCAAGGCGTCGAAGTTGTACAAAGAGTCCCATTAGCATTTTCCCAGTCTTCATTCGTTGACAATCAGCACAATAACATTTCGAGAAGGTATCAACGCTCAACAAAGAGCTGAGAAATCGTTTTTTGAGGCGTTGTTTACGAACAATGAGCCTAATCACACTGCTTTTGGATACATGACAGGCTGTAATGCATAGTAAATCATTTGCTTTTGAGTACATGACAGAGTATAATGCATGGTGAATCATTTGCTTTTATATGCATGATAGTCTGTAATGGCCATAAAAGCATTTGCTTTAGTAG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTACGATAACAACAAAGATACTAAATCTGAAAGCTATTCCCAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.50,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 15365-14815 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEKY01000004.1 Porphyromonas loveana strain DSM 28520 Ga0215711_104, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 15364 37 100.0 37 ..................................... CGTATTTCTTCTGGAAACCGGATATCATATTATTAAA 15290 37 100.0 34 ..................................... AGAGTGTAGCACTCGTTTGCTTATCTCTACAAAT 15219 37 100.0 35 ..................................... AACTCAGAGCATTCTTCAAGAGTCATCTGTCTGTA 15147 37 100.0 36 ..................................... AACTTCACCAGCGGTGAAAAATAGGCCTTTATTTCC 15074 37 100.0 39 ..................................... CTGTAGTTCCTCTCTCGCCCACATCCCCTCCCTGAGGGT 14998 37 100.0 37 ..................................... CTCACCCATTCATTCTGCACCTGCTCGTTTGAGCGGG 14924 37 100.0 36 ..................................... TTGCAAACCTAGTTTCTGGAAGAAGGTTTATCACAA 14851 37 91.9 0 ................................C.T.A | ========== ====== ====== ====== ===================================== ======================================= ================== 8 37 99.0 36 CTATCTATACAGTATCAGTCTCAAAGGCTATCAAGAC # Left flank : CTAAAGAAGTCTTCGTTGTTGAAAACTTTTTTTGGCACACAAAAAGCGAAGAAACGAACATCAGAAAACACTCTAAAGACATCACCTACACCCTGTTTTCATTTTCGAATAATCTCGAAAGGCTTCCTGCCACTCTATTTATTGATTATCAGGCAGTTACTGCCTCACATGCTTTTGTCTGTTTTTCGAAATATGGAGAATTGGTTGTTTTTGCCTGTCATTTTCGAAGAAACGACCTTTTAGATCATTGTAACTCCTTGATAATCAAGGGGCATTTTTCGCATAATTCGAAAATCGAGAATTTGGCAATTTTATTTTCTCTTTTTTCGAATGATCAAAAACTTTATATATCTTTGTCACAGAATGAGATAAAGCCTGTCGGGAGAGGCTGAACGTTCATACATGAACATTTTTACCCCTCCATTTTCGAAGAAAACCAATAGGCTTGTTATCAGTCAGTTGCCCAATCAGGCGCTCTTTAACTTATTGATAATCAACTC # Right flank : CAACAGCGCCCTGCAAGAATATCATTGGCAAGAGTAGCTATTTTTTGTCCGTTTATTGTGGAGATGGATATTTTGCACAGAAGCCAAAACAAGTATTTTTGCCCTCTGTCCGAGAGCTATTGACACGACTACCTATATGAAGAAAATGACCATCAAAGAACTGGACGAAGCCGACCGACCGCGCGAAAAGATGATGCGGCTTGGTGCTCGCAGCCTGTCGGATGCCGAGCTACTCGCCATCCTTATCGGTTCGGGCAACGACAGACAAACAGCAGTCCAGCTTGCACAAGAGATATTGGCACGAATGGACCATAGCTTGCCACGCTTGGCCAAATGCGAACTCCACGAGCTGACCCAGCCATTCCGAGGCATGGGACCCGCCAAGGCTGTCACCATCATGGCAGCCATGGAACTCGCTCGCAGGACACCTGCCCGCGAAATGCCACGCAAAGAGATAGTAAATAGCAGCCGCGCAGCCTACCGCGCCATCAGTCCCTACC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATCTATACAGTATCAGTCTCAAAGGCTATCAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 41067-40225 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEKY01000004.1 Porphyromonas loveana strain DSM 28520 Ga0215711_104, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 41066 37 100.0 37 ..................................... CTAATTTTTGAGCAGTCAAAGTTGGACTTAAACTGCT 40992 37 100.0 37 ..................................... ACTTAAATTGCTCTACGGTCATCGACCGTAAAAAATT 40918 37 100.0 35 ..................................... AAATAGTTTTTCCTTGTGCTATTGCCATATTTAAT 40846 37 100.0 36 ..................................... GCCGTACAGGGCCCATTCTCCGCAGTCCCTACAGCG 40773 37 100.0 37 ..................................... ATAAACTCGGTGTAGGGTTGCTTGGTCTTAATAATAA 40699 37 100.0 35 ..................................... CGTTTGAGTCCTTGCAAACGAATAGGAGGTCCTCA 40627 37 100.0 39 ..................................... TAGATAGTAATATATCACTATCTAAATAGTCAAAATGGT 40551 37 100.0 36 ..................................... CTGAGCAGGAAGCAGTGATTTCGTCACTGCCTCAAT 40478 37 94.6 34 .................................TA.. CACCTGAATATCAAACAGCAATCATACACTCAAT TT [40445] 40405 37 100.0 36 ..................................... CTTTTCCTCTGATGACATTGTGTCATCAGGGAATAT 40332 37 100.0 34 ..................................... TTGTATGGGGGCCGCTCGTCGCACAATTTGTTAA 40261 37 97.3 0 ...................................G. | ========== ====== ====== ====== ===================================== ======================================= ================== 12 37 99.3 36 CTATCTATACAGTATCAGTCTCAAAGGCTATCAAGAC # Left flank : AGATGGTTCCGACCGATCGGACTGCTCCGACAGCCCCGATCGGCTCACTCGAATTGCTTCAGTAAAATACCGGCACGAAGAACGCGCGGAGCCGAGTTTTCATTTTCGAATAATGTCGAAAGACCTTGCAAGACTTTACTCTTTGATTTTCAACGCATTACTGCTTTTCTCCCTTTTTGCTGTTTTTCGAAATACGAGAAAAATCCCTGTCGGCTTCATTATTTTCGAATAAACAGCCTTTTAGGCATTTGTAACTGCCTGATTATCAATGGGCAGTTTTCGCAGAATTCGAAAATTGAGAAAATGGAAACTTTTTTTCATTTCTTTCGAATGTTTAGAAACTTTGTATATCTTTGTCACAGAATGAGATAAGGCCTATTGCGAGTGGATAAATGTTCGTGCATGAACATTTTGACCCCTCGATTTTCGAAGAAAACCAATAGGTTTGTTATCAGTCAGTTGCCCACTCAGGTGCTCTTTAACTTATTGATAATCAACGT # Right flank : GCACGATAACAGTAAAGGGGAACTCTCTTCATGCTATTCCAGAGATTAGGTCGGTAAAATCATGCCTTGTAACTTCCCATTTGCAACTTGTCGTATATTTGTGCAGAAATTTAACAACTCGACGAAGATGGCGGAGGATAAATCGCAAGGATCAACCAATGTCGACACTTTTACGCTTGAAGAATTGGCTCACAGACTTAAGGAGTGTAAGGACAATGGGAAAAAGCCGATTTTTCTCATCGGAGCAGGCTTTTCTGTCTCCGGAGGTATCCCCCTTGCAAAAGGTGTCGTAGAAGATGTTAAAAAGATATATCCACATCATAAGGATAAATCTGTCGAATATCCTGCTTTGATGAGTGTCCTCACTGATGATCAAAGAAGACGTTTGTTTAAGGACTATATTGATAACTCTTGGATCAATACCGCCCATATGTATTTGGCAAAATTGTATGCAGATGAGTATATTGACTTTATTTTAACTACGAACTTCGATGATCTTA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATCTATACAGTATCAGTCTCAAAGGCTATCAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 61882-62731 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEKY01000004.1 Porphyromonas loveana strain DSM 28520 Ga0215711_104, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 61882 37 100.0 36 ..................................... GGGTTGTCGTACCTACGACTGGCTCGGCTACAAACG 61955 37 100.0 36 ..................................... ATGAAATATATTCATGTGTCTTGTTGTTCTCTCTTA 62028 37 100.0 37 ..................................... TCCTATGAGGATCATCTCGGGTCTGTTCCCGAGATCA 62102 37 100.0 37 ..................................... TCCACCATTGTTGATGGCTAGTGAACCACTAATAGTG 62176 37 100.0 35 ..................................... GTGAAAAATAGACCGTTTTGGCCTTGTTTAATGCT 62248 37 100.0 39 ..................................... TTTTTTATAGTTTTTTTAATTACCAATATCCGTGATCAA 62324 37 100.0 36 ..................................... AAAGTGTCCGTCACTTTCGCGATCATTCTGTCAAGT 62397 37 100.0 40 ..................................... GGTTTTTCTCCTCTTTGGATTTCATTGACTTCAAAAGAGA 62474 37 100.0 37 ..................................... CTTACTTTTGTTATTTTCATAGAGGAAGGAGTATTTT 62548 37 100.0 35 ..................................... CCCTATTTCCTTGGGTGTAGATTGTACCCAATTGA 62620 37 100.0 38 ..................................... GTGACTTCAATCACTCCGGGAGCATCGCCCCCGTTGAG 62695 37 86.5 0 ..........................A.A...C.CC. | ========== ====== ====== ====== ===================================== ======================================== ================== 12 37 98.9 37 CTATCTATACAGTATCAGTCTCAAAGGCTATCAAGAC # Left flank : AAGATGGTTCCGACCGATCGGACTGCTCCGACAGCCCCGTCTGCTCTCTCGAATTGCTTCGATATAATACCGGCACGAAGAACGCGCGGAGCCGAGTTTTCATTTTCGAATAATGTCGAAAGACCTTGCAAGACTTTACTCTTTGATTTTCAACGCGTTACTGCTTTTCTCTCTTTTTGCTGTTTTTCGAAATACAAGAAAAATCCCTGCCGGCTTCATTATTTTCGAATAAACAGCCTTTTAGGCATTTGTAACTGCCTGATTATCAATGGGCATTTTTCGCAGAATTCGAAAATTGAGAAAATAGAAACTTCTCTTCATTTCTTTCGAATGTTTAGAAACTTTGTATATCTTTGTCACAGAATGAGATAAAGCCTATTGCGGGTGGATGAATGTTTGTGCATGAACATTTTGACCCCTCGATTTTCGAAGAAAACCAAGAGGCTTGTTATTAGTCAGTTACCCAATTAGGAGCTCTTTAACTTATTGATAATCAAATT # Right flank : CTGTAGAAAGGGGCCGGACTCTATATGAGTGATTTCATGGAGTCGGCCTTTCTATAGGGTGGATGTAATGGTGATCATCGTAGACAGATGGTGTTTCGGTATTAGCTGGTCTGTGATATGTACGATTCTCTTCGGGCTCTCTCGTATCGTGGTAATCCGTAGCGGATAGCCGGTTCATAACCGAAATAACACAGAGGGGGCGTTGCATCATGTATGCAACGCCCCCTCTACTTTATGCGTAAGATGGAGATTTTGCTATTGTTCTGTGGCAAAGAGAGCTGTGATCTGTTCGTAGTCGGCTTGGATTTGCAAGCGCAGTGCTTCCATAGAGTCGAACTTCATATCGTCACGAACAAAGGAAACAAACTCCACGCGCACCTGTGCTCCGTATATCATCTGGTCGAAGTCGAAGAGGTTCACTTCTATAGTGCGTTGATCACCGTTGTTCAGCGTTGGTCGCCGACCTATATACAGCATCCCGTTATATTGCGTCCCACTTA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATCTATACAGTATCAGTCTCAAAGGCTATCAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //