Array 1 247142-246624 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHXJ01000003.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-3991 NODE_3_length_725868_cov_84.238481, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 247141 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 247080 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 247019 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 246958 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 246897 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 246836 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 246775 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 246714 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 246653 29 93.1 0 ............TC............... | A [246626] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 265009-263456 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHXJ01000003.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-3991 NODE_3_length_725868_cov_84.238481, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 265008 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 264947 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 264886 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 264825 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 264764 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 264703 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 264642 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 264581 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 264520 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 264459 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 264398 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 264337 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 264276 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 264215 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 264154 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 264093 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 264032 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 263971 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 263910 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 263849 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 263788 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 263727 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 263666 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 263605 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 263544 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 263483 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //