Array 1 29326-29533 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHAT010000034.1 Pectobacterium brasiliense strain IPO:0590 PCIBMJAJ_34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 29326 28 92.9 32 A..T........................ CACCACGTTTTAACCTCATCGACAACATCAAG 29386 28 100.0 32 ............................ TTAGGCTTTGGCCCCGGCTTCTTGCGTTGAAC 29446 28 96.4 32 ...........C................ ATGCGCGATTTTCTCAATGCGAAAGAATAGGT 29506 28 85.7 0 ...........A.C......T.A..... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 93.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AACCGACGGATGTCGGCGGCACGCTGTTTGGCGGCATGTTTAGCGCAATGTTCGATCTCATCTACTGGTCTTGCGCGGCATCGGGTTTCTGCTTTCTGGCGCTCTTTCAGCTTTCAGGATGGCGTGTTGCCTGGATACTCGCGGGACTGGTGCAAATCGGCATCAGCGCCCTGTGGCGGATTCAATATTGGCAGGAGTATGAAAACGACAATGTGATGCTCTCCCCCATGCCCGGTGAACTGTATGTTTCCATGCTGGTGGGCGTAGGTATGGCGGCTATCGGCATCGTGAAATATCGACACGCGCAGCGCAACCCAGTCGCTCAACACCCAACCTATGCTAAAACCGTCGCCGCATTGCTGCTCGTTGCGCTTTATCTAGTGCTTCCGCTACATCTCTACCTGCGTGAACCTCTCCCCTACTGCGCCTTTAGCCCTGACGGACAGCAGTTAAGCATATGCCTGGGAGACAATGACGAGCGGATTATTGTGGAGTGATGG # Right flank : AATAAAGCTCTCCTAAAATCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGACTTCGATCTGAAAATCCTGACACTGCTACAGACGAACGGCCGCTTGACCAATCAGGAATTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGCTCCCGGCGTCGCATCGCGCTAGAACAGGCACAGCTGATTCTCGGCTATCATGCCCGTCTGTCGCCGAACGCCGTTGGACTGGAATGTCTGGGATTGATTGAGGTGCGACTGATCAACCACACCAGCGAATACGTTGAGCGCTTTCACCAGATGCTGGGGGAAGTGGACGCTATCATCGACGCCTATAAAACCACGGGCGATGCCGATTACCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGACTCAGCACGCTGATTAGTCAGATTCTGTCGCAAAACAAGAGCG # Questionable array : NO Score: 3.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 79915-74700 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHAT010000001.1 Pectobacterium brasiliense strain IPO:0590 PCIBMJAJ_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 79914 29 100.0 32 ............................. CAGCCTAACTCCAATGGTAGTGTAGGGGTAAC 79853 29 100.0 32 ............................. CATTGCAGGTTTGCATGGTGGACACCAGCGCC 79792 29 100.0 32 ............................. TCACGCGCAATGATGATGATATCGTCAATTGG 79731 29 100.0 32 ............................. GCTCTGTTGCCGCAACCTCCACCTCACTCACG 79670 29 100.0 32 ............................. CTATTCGTGCGATGAAATCCGCGGCATATATC 79609 29 100.0 32 ............................. TCAATAACACTTTCCACACTAACTGTGTCGCT 79548 29 100.0 32 ............................. GGAGGTGCTCTGTCCCGATGTGGAGTGGTTGC 79487 29 100.0 32 ............................. TGGATAACGTCACAACTCGCGTGTTCCGCAAC 79426 29 100.0 32 ............................. TAACATCCCCGTGGGAATCGTCCGCACAGGCC 79365 29 96.6 32 A............................ CTAACTGGTTCGCGTGGATTTTTGAAACTGGT 79304 29 100.0 32 ............................. ATCGGGGATAAAATTCTTAGAATCCCATGCGT 79243 29 100.0 32 ............................. CAATAGCCTGATTTTAATGTTGCACCATCGGC 79182 29 100.0 32 ............................. TGCAGTGAGAGAATGCCAAGTGACGGTGATGA 79121 29 100.0 32 ............................. CGGCAGAAACTCCTAGCACATTCGTAGCAATA 79060 29 100.0 32 ............................. ATATATCTTTAGGTGATAGAATCCAAAATATA 78999 29 100.0 32 ............................. GGTTTATATCGAAATCAGACGACCGTCAAGGG 78938 29 100.0 32 ............................. GATATTCGAGTAGAGACGACCGCGCCCGTTTT 78877 29 100.0 32 ............................. CAATCGCGGAAAAGTGCCCCTCTTTCGCTACA 78816 29 100.0 32 ............................. AAGCACAACAGTAAATGTTATACTTGTGCGGC 78755 29 100.0 32 ............................. CTAGTTGATAAACCACTGAGATTTAGAAAAAC 78694 29 100.0 32 ............................. CAACATATCTTCACCAATTAGAAAGCCGTTGG 78633 29 100.0 32 ............................. CAGGATACCGGCAGCCCGACGACCAGCGCTAT 78572 29 100.0 32 ............................. GCCAGCATGAATACAGGATTCAAAAAACTATT 78511 29 100.0 32 ............................. AGTGGCAGAGCACAGACTTGCAGGTTCATACC 78450 29 100.0 32 ............................. TTTTAGCTCTGACGGCACCAGCGACATAATCA 78389 29 100.0 32 ............................. TCTTCCCATTCGATAATTTCGCTCATATCAGT 78328 29 100.0 32 ............................. AGCAAAATGCAATTCTGCAAAAGCAGTTGAAC 78267 29 100.0 32 ............................. CTCCTTGACCCCACCGGTGTTAAATCTGATTC 78206 29 100.0 32 ............................. GGGCTAAATCCTCAATGGCCTATGGTTCCCAT 78145 29 100.0 32 ............................. GATATTGCTTCAATGGCCTACAAGGTGGCGCA 78084 29 100.0 32 ............................. AGATTGTGACCGCTGATGAGTATCGCGAAGTG 78023 29 100.0 32 ............................. GGATCGGTTACGCTAACCCTTAACGTCGAAAT 77962 29 100.0 32 ............................. AATCAACTGACCTTCTTTAATACGGTAGCGGA 77901 29 100.0 32 ............................. CGTGGGCAAGTCGATCAGATGATTCAGCAGGC 77840 29 100.0 32 ............................. CATTAATCAGAAAATTATTCTTGAGCGTGTAG 77779 29 100.0 32 ............................. CAACGGTCTTTAGATGAAATCAGACTGGCTGA 77718 29 100.0 32 ............................. CCTTTAGGCCAAACACCAAACTTCTTGCGGTA 77657 29 100.0 32 ............................. CTTCTCCCTCAGATGATTCGTAATGCGCGTGA 77596 29 100.0 32 ............................. GCTCCAGGGTGATCTTTAATTTTTGCTTTGCC 77535 29 100.0 32 ............................. GATTAGAGCGAACCTTGACTTAACCTCTTTAT 77474 29 100.0 32 ............................. TAGAAAAGGCGTTATGGGATACCCAATCGGAA 77413 29 100.0 32 ............................. TTCGATAATCATTCAAAATCCCCTTCTTCATG 77352 29 100.0 32 ............................. GAACCAATGGAAGCATTGAAATACATTATTGA 77291 29 100.0 32 ............................. GTGAGGGTAGTTGCACAGATATTGCTGAGCAG 77230 29 100.0 32 ............................. TAAATCATTCCATTTGAATTTATATCCATCGG 77169 29 100.0 32 ............................. TTCGCAGGGCTGTATTTACTGCGTGATGAGAA 77108 29 100.0 32 ............................. GCATCGTCAAATTCGGCTGTGGCGGCCACGGC 77047 29 100.0 32 ............................. GCACATGGGAGGTCGCAGCAAATCAGTTCTGT 76986 29 100.0 32 ............................. GTAGGTGTCCTGAATACGTAATAATTGACATA 76925 29 100.0 32 ............................. GAATAAACATGACTGATTTATTGAGCAAAGAG 76864 29 100.0 32 ............................. AATATTAGAGTACAGGCGACCGCGACCATTTT 76803 29 100.0 32 ............................. AGGCCAGCGGGTGTTATACAGCGCCGGATATA 76742 29 100.0 32 ............................. TAACGTCAGATCCAGCATATCCCTGCAATCAT 76681 29 100.0 32 ............................. AAATGCGTTCTATGAAGTGGCGGTACGTAGAT 76620 29 100.0 32 ............................. TTTCTTTGAAACCGGACTGGAGCTTATCGATG 76559 29 100.0 32 ............................. GCGAAATGGAACTTCGTTAACGGCGTTCTGTA 76498 29 100.0 32 ............................. AATCTTCCCGGCAATTTGAAAGGCTTCCTCCA 76437 29 100.0 32 ............................. TGGGTTCTGGTCGAGACGGATGTCAACGGATT 76376 29 100.0 32 ............................. GTTAATGTAATGCGCAGTGATGCACTCCTCAT 76315 29 100.0 32 ............................. CTACGGAGATATGGAACGCCTGCCGCGCCGCA 76254 29 100.0 32 ............................. AATAGTCAGGTTCTTCCTGAATTCTTCTTTCT 76193 29 100.0 32 ............................. CAAGCAGGGCGGCGCTAGTTGTAGAGTTGCCG 76132 29 100.0 32 ............................. GTTTTCTCGCCTATGCATCGAGCCTTGATGAT 76071 29 100.0 32 ............................. CCAGAAACACGAAACGGCATAAAGCTAAATAA 76010 29 100.0 32 ............................. CACGCTTCTTCGAATGTGATAGACGGGAACTC 75949 29 100.0 32 ............................. GAACTAAAAAAGCTACGCGCAGAAGTGAAGGA 75888 29 96.6 32 ............G................ TTCATGAGCGCACTTTTACAGAGCAATATGCA 75827 29 100.0 32 ............................. TCCATGCCAACGTGTGCTGGTTCACCGTTTTT 75766 29 100.0 32 ............................. ATGCAGCAACGAGCGCGTGATACGTTACGTTC 75705 29 100.0 32 ............................. ATGAGTCTTAAATTTGTAGTACTTGATAATGC 75644 29 100.0 32 ............................. TTATCGATGCGTCGCCCTATCGGTTATTGCCA 75583 29 100.0 32 ............................. GTGATTGTTTTATCCAGCATTTAGAGTTGGAT 75522 29 100.0 32 ............................. CGCTGCAACATCGCGCTGGCGCACTTGCATAT 75461 29 100.0 32 ............................. CGTTTATCGCAAACCCCCTACGCCAGCCACTG 75400 29 100.0 32 ............................. TCTACTGTCTGGCCTTGCGCTGCGGCTTGCTG 75339 29 100.0 32 ............................. CACGTTGTGATCGAAGCTGTGGCACACGTCAC 75278 29 100.0 32 ............................. AACCCAACCTCGCCACACTCCGTTATCTAGTA 75217 29 100.0 32 ............................. GCGGATCGCAGTATATCAATCGGTATTTATTC 75156 29 96.6 32 A............................ TCATGAAAGTGCAAATCATTTATTTCTAAATA 75095 29 100.0 32 ............................. GGAAGGGGTTAGATAGAGCCTTCGTAGATTGG 75034 29 100.0 32 ............................. GATGACGAGTTACGGCGGCAACATCAGGCAGG 74973 29 100.0 32 ............................. TAGCTTTAAGTGTTTAGTTACTGATTTTCTAA 74912 29 100.0 32 ............................. GTCATATTTAATACGAACGTATGGCCACACTC 74851 29 100.0 33 ............................. TATGAATGGATATTGGGACTAAACAACGTATAC 74789 29 93.1 32 ...........A...............T. CGTTGCGCGCAGTTCGCCAGTGCAGCCCTTGC 74728 28 72.4 0 ........T..AG.-.T..T.....G.T. | T [74718] ========== ====== ====== ====== ============================= ================================= ================== 86 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGAAGTCTTGTCTGCGGGTGGCATTACGCCGCCGTTACCGCCGGACGATGCACAGCCGCCTGCAATCCCAGAACCGAAACCGTTTGGTGACAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGCTGATGGTTGTGACGGAAAATGTTCCGCCGCGTTTGCGCGGCAGGCTGGCTGTGTGGCTATTGGAAGTCCGCGCGGGAGTGTATGTCGCTGATACGTCACAGCGGGTGAGAGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTGATGGCGTGGGCGACCAATACGGAATCCGGTTTTGAGTTCCAAACCTGGGGAGAAAATCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : AATAGTAGGGATGTAAATCATATCAGTTTCCATATTGTCAACTCGTTCTGTTTATGGCATGGTGTTTCCAATTTGGAAATACTAGGGAAGGCATCAGGATGCATGTTATTTCGCGGGCACCTTTCGACACTGCAACCACTCAGTTTCCGAATCAGGCGGCGGCACTTGCTGATCTATATCGGGTTATCCAACGCGAAATGTATGCAACGCCGGACGATATGAAAAAACGCTTCCCTAGCCTGGATAGGATGAAATATCGGGAAAAATGGTGGGTTATTGATATTGGTGGCGGGCATCTTCGAGTGATGTTTTTTGCTGATTTTGAGCGGGGGAAAATCTTCATCAAGCACATCACATCCCATGTAGAGTACGACAGACTGACAGAGTATTACCGGAGGAATAAAGAATGATGTACGCAGACGCCATCAAGGCAGCTAACAACCTGACGAGTATCGTACCATTCCTCGGAGGTAGCACCTCTCGTAAGGATTATGAGGATG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //