Array 1 39816-39331 		**** Predicted by CRISPRDetect 2.4 *** 
>NC_016790.1 Corynebacterium diphtheriae VA01, complete sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence              	Insertion/Deletion
==========	======	======	======	====================================	=============================	==================
     39815	    36	 100.0	    27	....................................	TGGCCGGCGTAACTCACCCGCCGGTGT  	
     39752	    36	 100.0	    28	....................................	TGGCCGCCGCAATCGACTTTGAGCGCAC 	
     39688	    36	 100.0	    28	....................................	CTAGGCGACTTTGTGCAGGTGGGTGAGG 	
     39624	    36	 100.0	    28	....................................	AACTGTAACGTCGCGTAATGGCAAAGTC 	
     39560	    36	 100.0	    29	....................................	TGAGCGCCTTGTCATGATCTGCGAGGCCG	
     39495	    36	  91.7	    28	CTA.................................	TAGGCAAGGCGCTTGGCACTCATACTGG 	
     39431	    36	 100.0	    29	....................................	CCTACCCAGATTTGGTTCTCGCGTACGAC	
     39366	    36	 100.0	     0	....................................	|                            	
==========	======	======	======	====================================	=============================	==================
         8	    36	  99.0	    28	GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC	                             	       

# Left flank :   ACACCATTACTTCATCAAGTACTGCGTCAGTGACCGCGGAAATCGTCTCATGGGAGATGTCCACCCGCATAACAGTGGCCATATGGTGCCTGATATCGCGCACGGTCATCCCACTGGCATACAAGCTCACGATCATGTCATCGACATCCGTTAAACGCCTCGAGCCTTTCGGGACCATGGTGGGAATATACGTCCCAGCTCTATCCTTGGGGACGTCTACGGTAACTGGCCCGTCGTTGGGATCAACAGTCTTTAGGTAGGTGCCGTTGCGATAATTGTAGATCCCAGCAGCAGCTTTAGCTTCGCGATTTCAGCATGAGCAAGCAGCTTTTCCTCAGGTCGCGTCAATCTTGGCCTTATCAGCCGAGTCTCGTCTTACCACAGTAGTCATTCTGACTTATCTCCTTATGCGGAATAGAATCCCAAACACAAACCATCAGGCACCCTCATTCCCAAAAACCCTGATAAACTTCTCCTACGGTTCATCCCCGCTGGTGCGG
# Right flank :  AGGTAGCCCAAAAAATCCTGTTTAACATGGTTTTTTGGGCTACCTGAAGTCTAAAAAATCGCGAGTTGATCAGGCTTTTCTTCGCCAGAAACCTCTGCAGAAGAAGAAAAACGGATCATCTTCGACCATTGGATGTCCGATACCGAAAGGATTCGAACATCCCCACCTGGGGGTAATTTTTCTTTAATTAATTTCACCAAATTAGATAACTTTGCGGCCAGAGGCAGGTACTGCACATATACACTCAGCTGTGCCATACAGAATCCAAGATCTAAAAGATTCTGACGAAACGCCGTTGCTTGCTTTCGCTGAGTCTTTGTCTTCACCGGAAGATCAAACATCACCACACACCACACCGGATCGCTACCTTTCTTCGGCATCGAAGGGACCTTCCCAAATAGGCGGTACTAATTTCTCAACATCACCTTCCACATACCGCCCATACTGTTGAGCGAACGCGGTAAAAACCGTCGGAATTGACTGCCCCGCAGAATTGAAAG

# Questionable array : NO	 Score: 6.19
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:52.78%AT]
# 	Reference repeat match prediction:         R [matched GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-3.20,-1.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [3-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.64,4.91   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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