Array 1 1156047-1155722 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR824002.1 Streptococcus thermophilus isolate STH_CIRM_67 chromosome STHERMO, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 1156046 36 100.0 36 .................................... GCTTTCTAGCTCGCTATAATTACCCATTCCTAGAAA 1155974 36 100.0 35 .................................... TTTGAATAGTCTTTGAATCGCATTTGAACCATATA 1155903 36 100.0 38 .................................... AGGTTTTTTGCCATAGATTTTCCAAGACCTTCCCAACT 1155829 36 100.0 36 .................................... GCTTTCTAGCTCGCTATAATTACCCATTCCTAGAAA 1155757 36 83.3 0 ..............................TTTTTT | ========== ====== ====== ====== ==================================== ====================================== ================== 5 36 96.7 36 GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATTCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAAGTCAACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATCGAGGGCTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACACTATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCACAAGATATGGG # Right flank : GAAAATTTTGAAAACAGTATTGATACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCCAATGAGTTGAAAAGTACTTTCAGCTTTTGGGGTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTACATCTGCTCACAGACGACATCGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGATCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGGCAGATAAACTGTTAGAGATTTTCAATAGTGAGGAAAATCAAACCTATTTTTCAATTATTTTTGAGA # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 1397274-1395655 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR824002.1 Streptococcus thermophilus isolate STH_CIRM_67 chromosome STHERMO, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1397273 36 100.0 30 .................................... TAAACTCGACAAAAGCACTACATGAATATT 1397207 36 100.0 30 .................................... ATTTTTTAAGGAAAGGAGGAAAATAATATA 1397141 36 100.0 30 .................................... CGTTCAAAACAGCGAAAACTTAACCCTAAC 1397075 36 100.0 30 .................................... CATTAAGTCGCTTGAGGCAGACATTGAAGC 1397009 36 100.0 30 .................................... CCAAACTCAAATTGTCTATAATAATAACCG 1396943 36 100.0 30 .................................... TATCTCTATTTCAGGTGGTTTAAAACATTC 1396877 36 100.0 30 .................................... AAACGAAGATGGAAGCGTTGATGTTTATTC 1396811 36 100.0 30 .................................... GATTGCATTTGCCAGTATTTCTTTTGATTA 1396745 36 100.0 29 .................................... TGAAGACAACGGAAACAATCAACCTATTA 1396680 36 100.0 30 .................................... ACTTCTTTTTTAATGTCATCTAAGACAATA 1396614 36 100.0 30 .................................... GCCAATGATGTTCAATTCGTTAATGGAATT 1396548 36 100.0 30 .................................... TCAACATGGGATATTTCGTTGGTCAGGATG 1396482 36 100.0 30 .................................... TATGGCTCTCTTGTTGGAATAAAGATGATT 1396416 36 100.0 30 .................................... ATAACATAGCAGTCTATTTCTTTGCTGATG 1396350 36 100.0 30 .................................... GTTACCACGCGCCCTACTGTATTAGTGGAG 1396284 36 100.0 30 .................................... TACATACCCAAGGTTGTAAGTCGTTAAATT 1396218 36 100.0 30 .................................... TGTAAGTAGTCAATATTCACTTCTGATAAC 1396152 36 100.0 30 .................................... TTAGCGGTGATTGGAATAGAATAAGCGAAT 1396086 36 100.0 30 .................................... CTTCTACAGCAGTTTAAGACACATTATCAT 1396020 36 100.0 29 .................................... CGTATCGAAAACGGCGATAATCCAACAGT 1395955 36 100.0 31 .................................... CAATACCTTTTTTTAATTCATCTTGATAAGT 1395888 36 100.0 30 .................................... TTAAGAACAATATCATCAATACGACTTTCA 1395822 36 100.0 30 .................................... CATCTATCAAATTCAAATTCGGATAAACTA 1395756 36 100.0 30 .................................... TCCTTGCCATCTGCACTGTAAGCCCAAGCA 1395690 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 25 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAACATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATGTTCTCAGACACCTGATAAGGAACTATTACAGAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTTGGTCTGTGGATCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACATCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGATGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //