Array 1 82607-81115 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCXQ02000003.1 Salmonella enterica subsp. enterica serovar Anatum strain HIY0054 NODE_3_length_543516_cov_26.400788, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 82606 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 82545 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 82484 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 82423 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 82362 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 82301 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 82240 29 100.0 32 ............................. CGCGAGCAATCCCATCTGACGTTCCGGAGACA 82179 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 82118 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 82057 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 81996 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 81935 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 81874 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 81813 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 81752 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 81691 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 81630 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 81569 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 81508 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 81447 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 81386 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 81325 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 81264 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 81203 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 81142 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //