Array 1 879-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCDV01000355.1 Serratia marcescens strain KS5 contig355, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 878 27 93.1 32 --........................... TAAACCGCGCACGCGGCGCCGCAGATCAGATG 819 29 100.0 32 ............................. AGCTTAAACCGGATGCCCGCACTTCACTGCAA 758 29 100.0 32 ............................. TCGTCGGCGCTGACCGTGCGCTTTTCCTTTTT 697 29 100.0 32 ............................. CTGTAGAAGTGGTTTAATAGGCTGCGGCTATG 636 29 100.0 32 ............................. TGTTCTTCGTGCCGATGGCATACAACGGGCCG 575 29 100.0 32 ............................. TTAACGACGATCTGGCCGGAGTGGTAAACCGA 514 29 100.0 32 ............................. GCGCCGTCCGGGATAATCGGTTCTACGTTGAA 453 29 100.0 32 ............................. AACTGGCCGCATTTGGGTTAACGCCCGAGGAC 392 29 100.0 32 ............................. TTGAAGTAACTTATAGTGATGAGGGTGACCAC 331 29 100.0 32 ............................. CATGTTGCATAGATAGTGCTTGACTTTGTTTT 270 29 100.0 32 ............................. GGCATGTGGGAGTTTCCGCGTATTAACCAGGG 209 29 100.0 32 ............................. GATTGGTTCGAGCCATCCCGAACCGTTGAAAA 148 29 100.0 32 ............................. AACAGGCTAACTTCACCGTGCTCAACACAGTA 87 29 100.0 32 ............................. AGCGTCGCAAAGGCGACGGATGTTCTTCAGTG 26 26 89.7 0 ..........................--- | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : A # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-577 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCDV01000459.1 Serratia marcescens strain KS5 contig459, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1 29 96.6 32 ............................T GGAGACAGACGCAGAGCTACGCCAGCGTCAGG 62 29 100.0 32 ............................. TTCATGACCCAAATGCGCGGGCTGGCGAATCT 123 29 100.0 32 ............................. TACTTAAACCGGATGCCCGCACTTCACTGCAA 184 29 100.0 32 ............................. TGGGCATGGAGCAATAACCCGGCGTGGATTTG 245 29 100.0 33 ............................. TAAGCTTACCGGTCACATCAGCGTTTTTGCGGC 307 29 100.0 32 ............................. TTCATGACCCAAATGCGCGGGCTGGCGAATCT 368 29 100.0 32 ............................. TTATTACCGGCCAGACATCAACAATAATTTGG 429 29 100.0 32 ............................. TACTTAAACCGGATGCCCGCACTTCACTGCAA 490 29 100.0 32 ............................. TGTCTCGCACCGTTTCCACTATTACCCCAGCA 551 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ================================= ================== 10 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : | # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //