Array 1 2024419-2026069 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015249.1 Dokdonella koreensis DS-123 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2024419 28 100.0 32 ............................ AGAAGGTGGCCTAAGCATGGGCGTGAAGTACG 2024479 28 100.0 32 ............................ GTCGGTGGCATCGATCAGGTCGCTAACCCCTG 2024539 28 100.0 32 ............................ TTCCGGCGGATCCACCTCCCCGTAGTGCGGTG 2024599 28 100.0 33 ............................ TACACCGAGCGAGACGGGATGCACCAGGATGCC 2024660 28 100.0 32 ............................ TGTGGGAGGACTTGCTGAAGCCACGGCTCGAC 2024720 28 100.0 32 ............................ GCACCCCCGGGCACTTGAGACCCGGCCGAGCA 2024780 28 100.0 32 ............................ AGGCGCGATAGAGGTCTTCGAGAGGCAGTGCC 2024840 28 100.0 32 ............................ TGGATGAACCGCTCCGGGTCGGTGACGTCCTC 2024900 28 100.0 32 ............................ TGCCGAAGCAGCTTCTCGATGCCGGCGCTGGA 2024960 28 100.0 32 ............................ AGAAGCGCCTCGACATCCACCGGCTTCTTCTG 2025020 28 100.0 32 ............................ CGATCAGCTCGACCCGCGGGTCTCGCTGGGGA 2025080 28 100.0 32 ............................ AGGAATCCGGTGATGAGGAGGGCTGTAGCCAT 2025140 28 100.0 33 ............................ ATGGGGTCAGCCCTCGCCGAGCGTCAGCTTGGC 2025201 28 100.0 32 ............................ TCTCCGTGCGCTGGTTCAGGTTAACCACGCTG 2025261 28 100.0 32 ............................ ACACGCGATATCACGAACCCTGACGTCTTCGC 2025321 28 100.0 32 ............................ TGCTGCACCTTGTCGCCGTACTTCTTCGGCTC 2025381 28 100.0 32 ............................ TCAGGGGCCTACGCTGACCTGACGGGCGCGCC 2025441 28 100.0 32 ............................ GATCCAGGATGTGTTCGACCGCTGACCGTGCG 2025501 28 100.0 32 ............................ TCAAGAGGTCGCTTAACCGACAAGTAGACCGG 2025561 28 100.0 32 ............................ TTCCCGGACGGCTGGCGAACCTCCCACCCCAT 2025621 28 100.0 32 ............................ CTCAAGCCGACGTGCACTTGACAGCCATCGCC 2025681 28 100.0 32 ............................ ACGAATGCGGTCGTCGTCCCACGGATGGGACT 2025741 28 100.0 32 ............................ TGTTCAACGTCACCGCCGGCACGGCGATCGCC 2025801 28 100.0 33 ............................ ACGACCTCGGTCCTCAACGCCGACAACCTCTAC 2025862 28 100.0 32 ............................ GATGGAATCGACGCAGCTCTACGAGACGATGC 2025922 28 100.0 32 ............................ GACAGGTAGTCGCGCCCGGCCTCGCTGGCCTT 2025982 28 96.4 32 ............A............... ATTTTGAGCATCACCAGCACCATCGGCAGGGC 2026042 28 82.1 0 ....G.......A.......T.....CG | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.2 32 GCTCACTGCCGCGCAGGCAGCTCAGAAA # Left flank : TTTGCGGACGCTGATGGAGACCAACTGGCTGCTCGGCATGCGTGATCACGCCTCCGTGACCGACATCCAGGCGATTCCCGGCGGAGCAGGGCATCGCCGCGTGTTTCGGGTCCAGGCTCAGAGCAGTCCTGAACGCCTACGGCGGCGCGCGATGCGACGCCACGGGCTCAGCGAGGACGATGCGCGAGCGCGGATTCCGGAAGCCGCCGGAAGGACGCTGAAGCTCCCGTTTGTCCAGTTGAGCAGCCGCAGTACCGGACAGCTGTCCTTCCCGCTGTTCATCGAGCACGGTCCGATCGAGCAGCAACCCGTTTCTGGCCGTTTCAACAGCTATGGCCTCAGCCGCGAGGCGACGATTCCCTGGTTCTGACCCTTTTTCGGACCGCAGTCACGCTTGCTTTTCCGATCAACCACTTGCGAGCCCTCGAGAAATTTGAGGAGAACGCTCGCAAGTGGTTTTCTGCTTTTTGAAATCATAGACTTCCGCGTCGATCGCTCTA # Right flank : GAGTGGAAACAGCAGCGGAGGCATCTTTGCGATAGCTCACTGTTGCACAAGCAGCCTGCCGTCCGAATTCAGGATGTGCACTTGTAAGAAATCACCCCTCCAAGCCGCTCTCACCTTGACACCTCTCTCCCCCCCGCGCAGACTCGACCACGGAGCCTAGAACCTCCTTCACAGAGCGGTACCCACCTCCGAAAGTCCGGTGGGTTTTTTGTGCCCGCGCCTCGCGCGGTCACTCTCGGCGTTCGTGCGCCGGGAGGGCGGCTAATACAACACCCCGCAAGGGGAAATACGCCCGCCGTCTCTGTGCGGTTCTAGCCTCCCGGCATCCCCGGCGCCTCTACGCGCCGGTGGGCCGTGCGTTCCGCCGGATTGCGGATGCACGCGATTCCGGTGGATTCCTTCAGGCATCCAAGGAGAGGTGATCGCCATGAAAGACAACGTTCGTTTGAGTCCTCCTCCGCCGGCGGCGCCGGCACCGTGGCCGGCGTTGCCGCTGCGCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCACTGCCGCGCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2845827-2842102 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015249.1 Dokdonella koreensis DS-123 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2845826 30 100.0 36 .............................. TTGCGGTCGAAGAAGTCGTCGAACATCGTCGCGAGT 2845760 30 100.0 35 .............................. TGCTTGATGTTGGCCCACTCACGGCCGCCAGCGGT 2845695 30 100.0 34 .............................. ATTGTGCGGCGACCTCGACGATCTCCTTCCACGT 2845631 30 100.0 36 .............................. GGCCCCGGGATGTAGATTCCCTGCTCTGCGGAGCGT 2845565 30 100.0 36 .............................. TCGCGTTCGACGTCGGTCTCCATCCGACGCATGGGT 2845499 30 100.0 35 .............................. TTGGGTGCCAGGTCGCGCAAGCCGGCCTTGAGGGT 2845434 30 96.7 37 .........G.................... TTCCGCGGCATTCCCAACGACTGGTGCTGGTCGAGGT 2845367 30 100.0 37 .............................. TCCGAGTCGAAGTTCTCCAACTTGGATTCGCTCGAGT 2845300 30 100.0 37 .............................. GAGATGTCGCGGCTGTACAACGCGCTCGACGAGAAGT 2845233 30 100.0 35 .............................. TGGCAGCCCGGCCAGCTGACGCAGCCGCGGAACGT 2845168 30 100.0 36 .............................. GACAGCGTGACGCCGGAGCCCTTGTCGGTCGGATGC 2845102 30 100.0 35 .............................. TCAGCGCCCGCGGAAGCAGCGGCGCAGCAGCTCGT 2845037 30 100.0 38 .............................. TCGTCGTACTGCTTGGTGACGCGCTGGATGGCGACCGT 2844969 30 100.0 35 .............................. CCCTTGGCAGGTGTGAAAATGCGCTCATGGAATGT 2844904 30 100.0 37 .............................. GCCGTGCGCGAGCACGATGCGATCGTTCTGCGGTGGT 2844837 30 100.0 35 .............................. TACGACCTTCGGGAATCGATGGAGGCTTGGGCTGT 2844772 30 100.0 37 .............................. GAGCGGCGTTTAAAGACCGATCAACGGGCCGGCGGGT 2844705 30 100.0 35 .............................. TGCGTCACCTGCGCCCACAGGGCGGCCTGGTGCGT 2844640 30 100.0 37 .............................. GAGACGAGGTTGCCCTTCTTGTCGTATTCGACCCGGT 2844573 30 100.0 35 .............................. TGGAACTCGGCGTTGTAGCGGCCCGTCGCCTTCGT 2844508 30 100.0 35 .............................. TGGTAGGTGCCGCCGGCGCGGCCCGACCGGCGAGT 2844443 30 100.0 35 .............................. TCCCCGGAAGCGGCCGAAGCGCTGCTGGCGGCGGT 2844378 30 100.0 36 .............................. ATCCAGCGGGAGGCACGGGCCAGGGCGGGCGCAGGT 2844312 30 100.0 37 .............................. TGGAGCACATCGGACGAGCCCATTCCACACCGGCCGT 2844245 30 100.0 37 .............................. GCTACTACGAGCCGAGCTGCAGCCGGTTCGCCGTCGT 2844178 30 100.0 38 .............................. ATCGATCGCCGTCGCGGTCGCGACGTTGGCCCGGCCGT 2844110 30 100.0 36 .............................. CTGGAGCGGCCGGCACACATGTGGCTGGTGCAGCGT 2844044 30 100.0 35 .............................. TTGAGGTGCCGCAAATGCAGGAAAGAGCCCCGTGT 2843979 30 100.0 37 .............................. GCGGTCTCGATGTCGACGAACCCGCTGTCGCTCAGGT 2843912 30 100.0 37 .............................. TACGGCGACGGGGCGGACGAAGAGCTGGACGTCATGT 2843845 30 100.0 36 .............................. TTCAAGCCGCCGCGCTGACGGCCTGCGGCCGCCCGT 2843779 30 100.0 37 .............................. TGGTCGGCCTGGGCCGGCGAGGCCGACGCGATCACGT 2843712 30 100.0 36 .............................. AACACGACCGCGCCGGTCAGCGCGCTTTCGGGTCGT 2843646 30 100.0 36 .............................. AACACGACCGCGCCGGTCAGCGCGCTTTCGGGTCGT 2843580 30 100.0 30 .............................. CGGTGCCGGTCGCGTCGATCGACAGGCCGT 2843520 30 100.0 36 .............................. TCGGGGTCCGTGACGACAGTCGCGATGTCGGCCGGT 2843454 30 96.7 37 .........T.................... ATCGATGCCAGCTACTCCAATCGCAAAGGTAAGGGGT 2843387 30 100.0 38 .............................. TGGTCGTATGCGGCGGAGCGTGGATGGTCGAGCGATGT 2843319 30 100.0 36 .............................. AGCAGTTCTGACGAGGCCGTCGCGCGCGTCGATGGT 2843253 30 100.0 35 .............................. ATGCTCAGGACGCGCTGGAGGCGGTCCGGGTCGGT 2843188 30 100.0 35 .............................. ACGTCGAGGGGGCTCGTGCTGGCAAGGTCATGAGT 2843123 30 100.0 36 .............................. GTTCGGTCACGCTGGCGGTTGAGGTGATAGCGGGGT 2843057 30 100.0 37 .............................. TTGGCCAAGTTCGATGCACTTGCCGGGCCACGGTTGT 2842990 30 100.0 36 .............................. ACGACGACGCTGGAGATTGTCGACGACTGTTTCGGT 2842924 30 100.0 35 .............................. ATCGTGTTCGCGGCCAGCTGGCGGTCCAACAGCGT 2842859 30 100.0 37 .............................. GTCTGGAGGGGCACGCGATGAAGCGCATTAACCAAGT 2842792 30 100.0 36 .............................. AACGTCTGGAACGTGTGGAACTACCCGTCCGGGTGT 2842726 30 100.0 36 .............................. GCGCCATCCGGGGCCGTGAAGTTGAGCGTCGCCGGT 2842660 30 100.0 36 .............................. CACCCATCCGAGGAGTTCACGCCGCTCTGGTTCGGT 2842594 30 100.0 36 .............................. ACTGTCGCTAACGGCAATGGCGCTGGTGGCGGTAGT 2842528 30 100.0 36 .............................. ACTGTCGCTAACGGCAATGGCGCTGGTGGCGGTAGT 2842462 30 96.7 36 .........T.................... TCGGACCGCACGCTGGCCGCGCCGGCCACGACCTGT 2842396 29 93.3 36 ............A.-............... GCAAGGGTGGAAACGACCAGATCGCCCAAGTTGAGT 2842331 30 100.0 37 .............................. GTGTCACCGAGCGCCCCACCGTGGTCAAGACCGGTGT 2842264 30 96.7 37 ................A............. GCCTACATCATCGGCAACTTCAACGGACTGGCCGGGT 2842197 30 86.7 37 ...A...A.........T.......A.... GCGCAATCCGATGAGGTGGGGGAGGTCATCCTTGCGT 2842130 29 93.3 0 .....T.........-.............. | ========== ====== ====== ====== ============================== ====================================== ================== 57 30 99.3 36 CGCGCCCCGCAGGGGCGCGTGGATTGAAAC # Left flank : TCGTATCTGTGGAAGTGAGGGGGCGTTCCGACATGATGGTCCTGGTCAGCTACGACGTGAGTACGGTTTCCCCCGATGGCGACAAGCGCCTGCGCCGCGTCGCCAAGGCCTGCCGTGACTGGGGCCAGCGCGTGCAGTTCTCGGTGTTCGAGATCGAGGTCGACCCCGCACAGTGGGTGCAGCTGCGTCAGCGCCTGTGTGATCTGATCGACCCAGCGGTCGACAGCCTTCGCTTCTACCAGCTGGGCGCGAAGTGGGAAGGCCGTGTCGAGCACGTTGGCGCCAAGCCGACGCTGGATCTCAAGGGTCCGCTGGTCTTTTGACGCGAACCGCAAGCGGCAGGCAAATCCCTGGCTGGTTCGCGTTTCTCCAAGATACTGAGCCACAAGGAAAACGGGCGCTTCGGCCGCCTGTGCGCCTCGTCATATAGTCGACTCGAGGTACGTTCGCGGCCGCTCGGGCTTTTTCCAAGCCGTGGCCGACGTTTATGCTGAGGCCGT # Right flank : CAGAAGATGCGTGTCGTTACTCGCTACGAGTATGAGTCAAACTTTGAATAGTTTCGGATCGAATGTATATATCAAGGTGATGCTGTTAATTATGTCTTCCGCGGGCATTAATTTAGTTCAAATCTAATTTGATGGGGAATAACTTATTGACTTGTCGCGGGCATAAGTGCAACATCCCTCTCGGAGTGTAGAAACTCCTCGTAAAGCGGCTCCCACCTCCGACAATCCGGTGGGTTTTTTGTGCCCTAGATTTTTTCAGGGCAGCTCGGTGCGTTTTTGTGCCGGGAGGGCGGCCAATACAACACCCTGCGAAGGGAAATACGCCCACCGTCTTTACGCGGTTTCTAACCTCCCGGCATCCCGGCGCATCATGCGCCGGCCTGCTGTCGCTCCGCCGGATGCGGGCAGCCGTGATCCTGGCGGATTCATTGGATGACGCGAGGTAAGGAGATCGACATGAACGAGGACAGCACTGGCCGGCCGCGCAAGGTACGGCGTAC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGCAGGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2857586-2857026 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015249.1 Dokdonella koreensis DS-123 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2857585 29 83.3 36 ....TG....-..CA............... GCAAGACGCGCGAGGGTCGAGGAACAGAGCACCTGT 2857520 30 93.3 36 ........T....A................ ATGGCGTAGCTCAAGGCGGCGCGCGCGACGGCCGGT 2857454 30 100.0 36 .............................. GGCAATCAGTCGCGTGGAACGAACTCTTTCGGCAGT 2857388 30 93.3 39 .........T........A........... TTCGGTCGCTCGCGCATGGGTGCGATGTACGCATCGCGT 2857319 30 96.7 37 ...A.......................... CAGGTCAGGTTGCCGACGAACGGCGCGCGGTTGCGGT 2857252 30 96.7 37 .....T........................ GTCGACGCGCACGGGTTGCGCTTCGAGGATCGCCGGT 2857185 30 100.0 36 .............................. AGCGACTCGTAGTACGGCAGGGCGGAAGTGCCACGT 2857119 29 93.3 35 .........T....-............... GGCGGGTAGTGCGTATGCCACCACTGGTCATCCGC 2857055 30 80.0 0 .............C.....C....C.GG.T | ========== ====== ====== ====== ============================== ======================================= ================== 9 30 93.0 37 CGCGCCCCGCAGGGGCGCGTGGATTGAAAC # Left flank : CCGGCGATGCGCGCCTCGGCCTCACCGTCGCGGCGGTGGCCCTCCAGCGTCCGGCCGTCCGGCGCGACCATGGCCGCGTCCACGCGCCGGCCCGGATAGGCACGGGCCACGTAGGCAGCGAACGTCGCGGGCAGGTCGTTGCGGTTGGTCAGGCTGTTGCCGACGAACAGGACGCGCACCGGCGATGCGGGTTCGGCCGGTGCGGCGAGGACGGCGGTGCCGGTGCCGGCGCACAGCAGCGCGAGCGCCGCGGCCAGCCACGGACGAAGCGAGCGGATCATGGTTGTTCCCTCCCGAGCGATGTCCCGGTCGTGGCGCAGCGGCACATCCCCGCCGGATGCCGCAGTGCCCTCGGGCCGGCATGGGTTGCGCACCGGCGCGGCCGGCCGGAACGAACGCGGCCGCGGAGGCTTCGGACCGGCGATGCGCGCGGGAGTTCACACGCCGCGTGCACGGGCCGAGAATACGACGTCGTCAGGATGCTGGCTTGATCACACGCT # Right flank : TCACACCGCTATGTGCGGGGCGGCATCGATTCGGGCGCCTGCCAGCGGGGTGCGGACGAACGGAAGGCCAGCGCAGTGCCTTCTCCGGCAGTGCCGCCCGGACGGGCGGCGCTTCGCGTGATTAAGCCGCGCGCGAGGCGCGCTTGCGATCGCTTTCGGTGAGATGCTTCTTGCGCAGGCGAATGAACTTCGGCGTCACTTCCACCAGCTCATCGTCCTCGATGAACTCCAGCGCCTGCTCCAGCGACATCTTGATCGGCGGCGTCAGCTGCACGTTGTCGTCCTTGCCGGCCGCGCGGATGTTGGTCAGCTGCTTGGCGCGCAAGGCATTGACGGTGAGGTCGTTGTCCTTGGAGTGGATGCCGACCAGCTGGCCCTCGTAGATCTCGTCACCCTCGCTGACCAGCAGGCGGCCGCGCTCCTGCAGGCTGACCAGCGAATACGCCGGCGCCGGACCCTGGCCGTTGGAGATCATCACGCCGTTGGGCCGCTTGGCGATC # Questionable array : NO Score: 8.32 # Score Detail : 1:0, 2:3, 3:3, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGCAGGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [9-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //