Array 1 245792-247180 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJPI01000022.1 Listeria monocytogenes strain BCW_4267 PROKKA_contig000022, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 245792 29 100.0 36 ............................. GTTGAATAACCGGAAGCAAGTGGTACGTTTGTCCAT 245857 29 100.0 35 ............................. TTATCCGAATGTAATTCTTTAATGTTCAAACGATC 245921 29 100.0 35 ............................. ATCGTTGGGAACCTTATTCACGGGATGATTTTAAC 245985 29 100.0 35 ............................. TTGAAATACGATCACGACATAATACTTTCGTCATT 246049 29 100.0 37 ............................. TAAAATATTGGCGAAAACAGGTGACAGCAATAACCGC 246115 29 100.0 36 ............................. TAGTTATAAAACCAGTAGACTTCTACGGTAGCATTC 246180 29 100.0 36 ............................. TCCGCCAAGCAAACTATACAAGACTCATTTATCGAC 246245 29 100.0 37 ............................. AAACTAACTTAGTTTCAGAAACATCCCGCGAAAACTC 246311 29 100.0 35 ............................. AAAGCAGTCAAGAAGGCAGTAACGGGTAATGGTAA 246375 29 100.0 36 ............................. CATGTTACCCCACGTAAACCCTTGCAACCATGCCAT 246440 29 100.0 34 ............................. TTCCCCAAACATTTTATCATTATGACCTTATAGG 246503 29 100.0 34 ............................. ATGAAAAAAGGTTCGCTAGATATTTCTATGCTAT 246566 29 100.0 36 ............................. GTCTACAACATCACGTAATAGAAATTGAGTCTTAAC 246631 29 100.0 38 ............................. CCAGTTAAAGAAGAACCACAACCAGAGCAAGAAAAAGA 246698 29 100.0 35 ............................. CCGAAAAAGTCGGCAAAGTAAGATTGTTTTTTAAA 246762 29 100.0 37 ............................. TTGGAAGGTTGCTTTGGTGGTATTTGAAGAGTTTGAC 246828 29 100.0 34 ............................. TTCAAATTATATGTTACTTTTTACAAGAAATTCC 246891 29 100.0 38 ............................. GTGAACTCTGTCCCGCCGAAGGGAGCCGTCCAATCGTC 246958 29 100.0 35 ............................. CTAAAAAGGATTGGCAGAATGGAAATGTGTACGTA 247022 29 100.0 36 ............................. ACCATTACCACCAAAGTCCCTACACTCAATACTACC 247087 29 100.0 36 ............................. GAGAACGCCATACCAGTTGAACTAGATCATGTAGTA 247152 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 22 29 100.0 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGGAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : TGTGAACTCTGTCCCGCCGAAGGGAGCCGTCCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTCTGTCCCGCCGAAGGGAGCCGTCCAATCGTCGTTTTAACTACTTATTATGAAATGTAAATTACTCCGTTAATGTTTTAGATGCTTTTTTAACAGCGTTTTAACTACTTATTATGAAATGTAAATATTTTTTTATTCCAGCTTTTGCGTATCCGGCTTTTTGTTTTAACTACTTATTATGAAATGTAAATTTGTTTAGCTCCGTCAATTGAAAGTCTCGCAATAGGTTTTAACTACTTATTATGAAATGTAAATTTCTCGTAACTCTTGACGATTGCATTTTTTTACTCTCGTTTTAACTACTTATTATGAAATGTAAATTTTTGTCGCATAAATTCTTTGATGTGGCGGACTGACGGTTTTAACTACTTATTATGAAATGTAAATAACAGTATCATCACGTTGTTATTGCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 247299-249732 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJPI01000022.1 Listeria monocytogenes strain BCW_4267 PROKKA_contig000022, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 247299 29 100.0 35 ............................. TACTCCGTTAATGTTTTAGATGCTTTTTTAACAGC 247363 29 100.0 36 ............................. ATTTTTTTATTCCAGCTTTTGCGTATCCGGCTTTTT 247428 29 100.0 35 ............................. TTGTTTAGCTCCGTCAATTGAAAGTCTCGCAATAG 247492 29 100.0 37 ............................. TTCTCGTAACTCTTGACGATTGCATTTTTTTACTCTC 247558 29 100.0 37 ............................. TTTTGTCGCATAAATTCTTTGATGTGGCGGACTGACG 247624 29 100.0 35 ............................. AACAGTATCATCACGTTGTTATTGCTGTCACCTGT 247688 29 100.0 36 ............................. TAACCAAGCATTGCCAAAAACTCGTCTGTTGATAAT 247753 29 100.0 36 ............................. TTCTATTGCAGAACAGAATGAATTGTATGCACAAGG 247818 29 100.0 37 ............................. TCGTTAATCATAATTGATGAAAGTCATCATGTGTTAG 247884 29 100.0 36 ............................. ACGGGTACCAGCTTTGATTTGCCGTTTTCAATTATT 247949 29 100.0 35 ............................. TTTATCACTCCTATACTTTTCTTATTTCTGTAAAT 248013 29 100.0 35 ............................. GCTTTTTTCAACAATTTTATCACCAGATGTCATTA 248077 29 100.0 36 ............................. ATAGATTAGTAGGGAAATAATATGTAATGGTTACTG 248142 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 248208 29 100.0 36 ............................. CTTCTTAACCCTTTAACACAAGCGCAAGATGGCTGT 248273 29 100.0 36 ............................. TTAATAAATCCGATGGTGATGCCTATGTTATACGTC 248338 29 100.0 35 ............................. TAAAACATCGCTTCGTTATACAATGTCTTTTTATA 248402 29 100.0 36 ............................. GTCAATAACTAGACGAGCTAACGTTTGTCGCTGTTT 248467 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 248532 29 100.0 37 ............................. TAATACAAAATATTCATAACTCCTACATCATTATATA 248598 29 100.0 36 ............................. TTGCAAACCTAACTTATCTTTGTTTTTTTGCTTTTC 248663 29 100.0 37 ............................. TTGGATTTTATTAAATACAGAGTCACGGATTGTATTT 248729 29 100.0 37 ............................. ATGAATGTATTAGCTACATGGACAACTATGCAACAGT 248795 29 100.0 35 ............................. TACGATAATACGAGTTTTTCAATAGGCAGACCTCC 248859 29 100.0 36 ............................. CCGGACAAATCCACTTTCATGGCTAGAGCCGCTTTC 248924 29 100.0 36 ............................. GGTGAATTCGTCACAAGTATTAAGTCAATTACAGCG 248989 29 100.0 37 ............................. GTTATTAAAGGCTATATAGACAAGGTCTTAAGCGAAC 249055 29 100.0 36 ............................. AGAAATATGGGAAGCTGGACCAGAAAACTTGGCAAG 249120 29 100.0 35 ............................. TTTATTGTCGATAAGCTCATGACAGATGAATCACT 249184 29 100.0 36 ............................. AAAGGTAAAAATATTCTTGCTGTGGCAGGTCCTGAT 249249 29 100.0 38 ............................. CTCTTCCACTTTTGCTGCTTTTTCCGCATCTGGTACAA 249316 29 100.0 33 ............................. TAAGGTCATATAAGAAAAAATGTATTTTTTCCC 249378 29 96.6 34 .......................C..... CAAGATATGCTAGAAATGGCGCAAATAGCGCGCG 249441 29 100.0 36 ............................. ACGTTTGCGGTAGTTTTACCGGGCACGGTCAAATAT 249506 29 100.0 37 ............................. AAGCTACCCCTGCAAGACATGAAATAATCGCAATGCC 249572 29 100.0 36 ............................. GGCTTTCTGGAATTGTTTCGCTGACATCCCTGCCAG 249637 29 100.0 37 ............................. AAAAACTATGCAATTAGCAAAGTGATTTTATGTAATT 249703 29 93.1 0 .......................A....C | C [249726] ========== ====== ====== ====== ============================= ====================================== ================== 38 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : TTGCTTTGGTGGTATTTGAAGAGTTTGACGTTTTAACTACTTATTATGAAATGTAAATTTCAAATTATATGTTACTTTTTACAAGAAATTCCGTTTTAACTACTTATTATGAAATGTAAATGTGAACTCTGTCCCGCCGAAGGGAGCCGTCCAATCGTCGTTTTAACTACTTATTATGAAATGTAAATCTAAAAAGGATTGGCAGAATGGAAATGTGTACGTAGTTTTAACTACTTATTATGAAATGTAAATACCATTACCACCAAAGTCCCTACACTCAATACTACCGTTTTAACTACTTATTATGAAATGTAAATGAGAACGCCATACCAGTTGAACTAGATCATGTAGTAGTTTTAACTACTTATTATGAAATGTAAATGTGAACTCTGTCCCGCCGAAGGGAGCCGTCCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTCTGTCCCGCCGAAGGGAGCCGTCCAATCGTC # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCTAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGCTTCACTAAAATCCCCTTAGAAGAAGTCGCCCCTCCAAACAGCGCCGCCACAACCACACAGCTCAAAAAGAAAATCTGCACAGTTTCAGCAAACCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //