Array 1 145850-145308 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV811593.1 Rothia sp. HMSC066G02 Scaffold225, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 145849 36 100.0 35 .................................... TCCCACGGGTGGAGAGGCAACCCACCCGGTGCGGG 145778 36 100.0 36 .................................... CCCGTTAGATGGGTGCTCTTTTCGCGACTGAACGCA 145706 36 100.0 37 .................................... TTTCGCGACAAAAACTAAGGCGCTTTCTTATCGCGAA 145633 36 100.0 34 .................................... TTGTTCGGTGACGGTGTTGCCGACCAGTTCACGG 145563 36 97.2 39 ...............T.................... ACGTCAAGACCGACCCCATGCCTATCAGTGCGAACGCGG 145488 36 100.0 36 .................................... TCATCTGACGCGCGAAGGAAAGGCTGCGGGGCTGTG 145416 36 100.0 37 .................................... TCTGAGCCGTCAAGCCCAGCTCACGGCGCAAACGGTG 145343 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 8 36 99.7 36 ATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGG # Left flank : NNNNNNNNNNNNNNNNNNNNNNCCTTCCTTTTCGGAGGGACTTTCATTGAGGGACAAGGCCAACCCCGAGGACACCGCAGAAGACCCCCATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGATTTGGGTGAGGTGGATGTGAACTCCGGGGTTGTATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGCAGAAGCAGTACCGAGAAGACCGCCTAGCACGCAAGATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGAACGGTAGGGGAGGTACCCCTCCCCGGGGAGATGAAGATTTCCCTTCCTTTTCGGAGGGACTTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCCTTTTCGGAGGGACTTTCATTGAGGGAAAAATGGCCCCGCGACGTTGGAGCGTCCGGGACCGT # Right flank : CGCGCGCTACCCACCACACGGGGGTGCTGCGCTTCTTATTTCCCTTCCTTTTCGGAGGGACTTTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCTTTTCGGAGGGACTTTCATTGAGGGTCAGATTCGCCGAGCATGCCCTCACGAGCCAACGCAGATTTCCCTTCCTTTTTGGAAGGGCTTTCATTGAGGCTGCGGCAAACCTCCATGCTCACCACCGACACCACCCACATTTCCCTTCCTTTTTGGGGAGGGGCTTTCATTGAGGCAACGGGGAAACGATTTCAGCTTGGATGCCTGTCCGCATTTCCCCTTCCTTTTTGGAGGGCTTTCATTGAGGCGGTGTTCGGCGCGCACGGCGTCCACGCTCTCATGCATTTCCCTTCCTTTTTGGAAGGGCTTTCATTGAGGCAAACTCCACGGT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 146261-146083 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV811593.1 Rothia sp. HMSC066G02 Scaffold225, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 146260 36 100.0 34 .................................... ATTTGGGTGAGGTGGATGTGAACTCCGGGGTTGT 146190 36 100.0 36 .................................... CAGAAGCAGTACCGAGAAGACCGCCTAGCACGCAAG 146118 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 3 36 100.0 36 ATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCCTTTTCGGAGGGACTTTCATTGAGGGCGGCCGGTGAATATGCGACTAAATTCAAGATTGATAAATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGCTGTGAAAGATTCTACCGTACCTTCGGGCATTCAGTATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGTTCTCAAGCACACGAAAACTCAAGCCGTGAACTCATGATTTCCCTTCCTTTTCGGAGGGACTTTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTCCTTTTCGGAGGGACTTTCATTGAGGGACAAGGCCAACCCCGAGGACACCGCAGAAGACCCCC # Right flank : AACGGTAGGGGAGGTACCCCTCCCCGGGGAGATGAAGATTTCCCTTCCTTTTCGGAGGGACTTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCCTTTTCGGAGGGACTTTCATTGAGGGAAAAATGGCCCCGCGACGTTGGAGCGTCCGGGACCGTATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGTCCCACGGGTGGAGAGGCAACCCACCCGGTGCGGGATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGCCCGTTAGATGGGTGCTCTTTTCGCGACTGAACGCAATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGTTTCGCGACAAAAACTAAGGCGCTTTCTTATCGCGAAATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGTTGTTCGGTGACGGT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 146428-146669 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV811593.1 Rothia sp. HMSC066G02 Scaffold225, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================================= ================== 146428 24 100.0 49 ........................ GGAAATCATGAGTTCACGGCTTGAGTTTTCGTGTGCTTGAGAACCCTCA 146501 24 100.0 48 ........................ GGAAATACTGAATGCCCGAAGGTACGGTAGAATCTTTCACAGCCCTCA 146573 24 100.0 49 ........................ GGAAATTTATCAATCTTGAATTTAGTCGCATATTCACCGGCCGCCCTCA 146646 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ================================================= ================== 4 24 100.0 49 ATGAAAGTCCCTCCGAAAAGGAAG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAAGTCCCTCCGAAAAGGAAGGGAAATCTTCATCTCCCCGGGGAGGGGTACCTCCCCTACCGTTCCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATCTTGCGTGCTAGGCGGTCTTCTCGGTACTGCTTCTGCCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATACAACCCCGGAGTTCACATCCACCTCACCCAAATCCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATGGGGGTCTTCTGCGGTGTCCTCGGGGTTGGCCTTGTCCCTCAATGAAAGTCCCTCCGAAAAGGAAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGAAAGTCCCTCCGAAAAGGAAGGGAAATAGCTACCCGAAAATAGCCCGCAACCATGCGGCAGAAACGGGTGCTTCGCGAGAACCTCGCGGAGGCTACACGCAAAATTATACACTCCAACCACATCTACCCCCGCATAACTCCCTGGCAAGGGAAGAAACCATGCGAGCGACACGCCATGTTCCCGTCACGTACCAGGTTCTCGCTCACACAAAGACCCCCGCCGGGTGCTTCCTAAGCGACCCGGCGAGGGTCCTCACGTATGAGAGGGGTTGGCGCGGTTCAGGTAAACCAGACTAACCAAGCTAACCATGCAAACCGGGCGAGCTTCGAGTCTCACGGGACTAGAAAGAACAGCGCATCAAAACCCGAGCCGGCCAAAGCTCGGCCCCGGCGAA # Questionable array : NO Score: 2.75 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.10, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGAAAGTCCCTCCGAAAAGGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //