Array 1 134377-133250 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUKG01000003.1 Escherichia coli strain AUH_IMP203 NODE_3_length_244956_cov_55.6713_ID_5242, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 134376 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 134315 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 134254 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 134193 29 100.0 32 ............................. GCTCATTTCAAATGATCAGGTCCGGTGGTTTT 134132 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 134071 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 134010 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 133949 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 133888 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 133827 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 133766 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 133705 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 133644 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 133583 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 133522 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 133461 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 133400 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 133339 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 133278 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 161644-159925 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUKG01000003.1 Escherichia coli strain AUH_IMP203 NODE_3_length_244956_cov_55.6713_ID_5242, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 161643 29 100.0 32 ............................. CAAGACGACGCTCAACGACATTGCCGACGCCG 161582 29 100.0 32 ............................. GCGTGCCAACGGAATGCACCCTCATTGGTGAT 161521 29 100.0 32 ............................. TCACTGTATACCCAACTATTGGAGATCATGTA 161460 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 161399 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 161338 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 161277 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 161216 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 161155 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 161094 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 161033 29 100.0 32 ............................. ACAATCAGGGAACGATTGTTGACACTGTAAAA 160972 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 160911 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 160850 29 86.2 12 ...............C.A.C....G.... CAAACAGAGCCG G [160824] Deletion [160810] 160808 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 160747 29 100.0 32 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC 160686 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 160625 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 160564 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 160503 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 160442 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 160381 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 160320 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 160259 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 160197 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 160136 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 160075 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 160014 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 159953 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.1 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //