Array 1 455450-456759 **** Predicted by CRISPRDetect 2.4 *** >NZ_OETR01000002.1 Salmonella enterica isolate STY12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 455450 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 455511 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 455572 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 455633 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 455694 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 455755 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 455816 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 455877 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 455938 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 455999 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 456060 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 456121 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 456182 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 456244 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 456305 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 456366 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 456427 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 456488 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 456549 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 456610 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 456671 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 456732 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 472891-474855 **** Predicted by CRISPRDetect 2.4 *** >NZ_OETR01000002.1 Salmonella enterica isolate STY12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 472891 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 472952 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 473013 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 473074 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 473135 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 473196 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 473257 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 473319 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 473380 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 473441 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 473502 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 473563 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 473624 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 473685 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 473746 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 473807 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 473868 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 473929 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 473990 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 474051 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 474112 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 474174 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 474277 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 474338 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 474399 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 474460 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 474521 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 474582 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 474643 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 474704 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 474765 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 474826 29 96.6 0 A............................ | A [474852] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //