Array 1 65988-66261 **** Predicted by CRISPRDetect 2.4 *** >NZ_BPFX01000035.1 Pseudomonas sp. MRCP1333 MRCP1333_contig_35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 65988 28 100.0 32 ............................ TCGCGCCGTTGGTGTAAGCCCCCGGGCGCCAG 66048 28 100.0 32 ............................ GGCCGACGACTGGACGCCGAACGCCTCGGTGA 66108 28 100.0 32 ............................ TGGCAGCGCGTGACGTGCTGCAGCAGCTGGTC 66168 28 100.0 36 ............................ GTCATCCTCCGGCGGGCACTCGTGGTCGTAGTCTTC 66232 27 85.7 0 A...-......C...............T | G,G,A [66234,66238,66240] ========== ====== ====== ====== ============================ ==================================== ================== 5 28 97.1 33 CTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : AGCACTGGATAGCCTGCTGGCGCTGAATTGGTTGAGCGGCATGCGTGACCACCTGCACCTGGGTGAGCTGGCACCGATCCCGGCAAAGGTGAGCTGGCGCTGCGTCAGCCGGGTGCAGGTGGACAGCAATCCAGAACGCGCCCGCCGTCGTCTGATCAAGCGTCACGGTTTCAGCGAGGAGGAGGCGCACCGGCGCATTCCTGACAGCGCCGCCAAGCGTTGCGACCTGCCCTATGTGGCACTGCGCAGCAACGGCAATGGCAATGGTTTCCGCCTCTTCATCCGCCATGGACCGCTGCTCGGTGCTCCTACCACGGGTTCGTTCGGTGCCTACGGCCTCAGCGCCGAGGCTAGTATCCCCTGGTTCTGACCCTTTTTCTCACCCTCAAGCCGAGCCCTTGCAAAATCAATCACTTGCAAGCGGCTCCGGAAAGAGGGTGAAACGGTGGGAAATAGGGAAGGCTCTTTTATAATCAGATAGTTAGTGTGTTTGAATTCTA # Right flank : TCTCTCCACTCCACTGCCGCACAGCCTTCCCCCGGACCGAACTCCCCTCGAAAGCACGGCCCGGTGGCGTCGATCAGAAGTCGCCGCGCAGGGTCAGGACATAGCTGCGTGGGGCGCCGAACAGGTTGACCCGGTCCACGCCATCGGCCGCCACGTAGTACTTGCGATCGAGCAGGTTTTCACCGGTCACGCTCACCAGCCAGTGCTGGTCGAGTTTCCATGCCACACGGGCATCCCAGATGGCGCGACCCGCCGCGCCGTATTTGTAGCCGTCCCAGGTTTCGTTCTCGTAACGCGACTGTGCGGATACCCCGGCGCCGATCGTCAGGCGGTTCCAGTCGCCCGGCAGGGTGTAGCTGGTCGATACCCGCGCCAGGTGCCTGGGCGTTTCACTGGCCACCGGGCCGCCGTTGCTGCTGCGGGTCATGTTGTAGGTGTAGCCGGCCAGCACTTGCAGGCCCGGCAGCACTTCGCCGCTGGCTTCCAGGTCGACGCCCTTG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 402956-405298 **** Predicted by CRISPRDetect 2.4 *** >NZ_BPFX01000003.1 Pseudomonas sp. MRCP1333 MRCP1333_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ========================================================================================== ================== 402956 33 100.0 35 ................................. CTGATCCTGAAGCCCCCGCCGCCCCCCAGTGTGGG 403024 33 97.0 34 ................................T ACGCGTGGATTCAGTACTTCGACGTTGGCCTCCA 403091 33 100.0 33 ................................. TTGGCACGGCGCTTTACCCAGAGCCCGGGCAGC 403157 33 97.0 34 ................................T CGTCGCGCAGCACTGTGAACTGGCGTCCGGTCCA 403224 33 97.0 33 ................................C CTCGACCAACGCATAGCGCCGCAGCAAGCTGTT 403290 33 100.0 35 ................................. ACATCGAGTCGCCGGAGAGCGACGGCTGGGCCGAC 403358 33 97.0 33 ................................A GGTGACCTGGGCGTCCATCGTCGACGGGCCATC 403424 33 97.0 32 ................................A CGCCTGAGAACCAGGACCTGATCGCGCTGCAG 403489 33 100.0 34 ................................. GTTATCGCCCGGGTGCCGTGCCCAGCCGAATGCT 403556 33 100.0 34 ................................. AGCGATGAGTGGTGCGAGATGTACCGGGCCATGC 403623 33 97.0 34 ................................C CGAACACGATCACCAACGGCATGGTGGTGCAGCT 403690 33 97.0 32 ................................T CGCGCACTACGTGGCCGCTGGCGGGAGGCTCG 403755 33 97.0 34 ................................T TCGGATTCTGGTGGCGGACAGGCTCCGGCCAGAC 403822 33 97.0 34 ................................T GCTCAACGAGAACGGTCTGGCCTATGAAGGTCAG 403889 33 97.0 34 ................................A TCATTTCTTCTAGCTCTTGATCTGGAATTCCAAA 403956 33 97.0 34 ................................C GTTCATTCCTCAGTCCCATAGGTTCACCACTTGG 404023 33 97.0 32 ................................C GTGTCGCCCTGGAAGGCGCAACCACCGACGGC 404088 33 100.0 33 ................................. CAACGATGCGTCGGGAGTAGTGGTGCTCCAGGA 404154 33 100.0 33 ................................. TCCCGAGATAAGCCATAGTGCATATTCTGGATA 404220 33 100.0 33 ................................. GTGGTAGCAGGGACAGGTCGAGGCCGCCACCTT 404286 33 100.0 34 ................................. CAATCTGCAACGAGGCCCCAATCTCGGCCACCGC 404353 33 97.0 33 ................................T TCCTGGCCCAGTTCGCGGAATACTTCGACACCC 404419 33 97.0 34 ................................T TAGATACAGGCATGCCTATTTACTCCACCAGTAA 404486 33 93.9 32 .................G..............A GCGCATCGCGAACGCAGCCATCAGGCACGCGC 404551 33 93.9 34 ...........T....................A CTGCTGATCGGTCTCGGCCTTCGGCAGTGCGACG 404618 33 100.0 32 ................................. TCAATATCATCTCGCAATCCCTGGTCGCCCTC 404683 33 100.0 33 ................................. CCGTGTTCGGCATGACTCGCGCCGCAGCGCTCG 404749 33 93.9 90 .................G..............T TCATGCCCGGGAGAAACGATGAAACCAGTAGTGCGTCGCACCCCGCATGAAACACCGAGACCCGCGAGGGCTTCGAGGTGGACGGTAGTC 404872 31 90.9 34 .............--.................T GCTCCGGTGTGTCCTTGATCTTGTTGTCACCGCC 404937 33 93.9 33 .................G..............A TCGTGGAGGCGGGCAACTCGTTCGGCCTGCTCG 405003 33 97.0 33 ................................A TGGGGATCCACATGGGCCTGTGCCGGGGGCCGA 405069 33 93.9 34 .............A..................T ACGTCATCGAGCCTACCCTGGGCTATACCGTAGC 405136 32 93.9 33 .................-..............C ACTGGTCAGAGAGCATGTACTACATCGACTCCA 405201 33 87.9 33 ...........T......AT............T GGTTCCAGCTGGCGCGCTGGATCGACAGCACCA 405267 32 87.9 0 .......T.T...-..................T | ========== ====== ====== ====== ================================= ========================================================================================== ================== 35 33 96.7 35 GTCGCACCCCGCAGGGGTGCGTGGATTGAAACG # Left flank : CCATTTCTGTGGAAGTGAGGTGTGCGACATGATGGTTCTGGTCAGCTATGACGTCAGCACCCAGGATGCTGCGGGCGACAAGCGCCTGCGCCGCCTGGCCAAGGCCTGTCGCGACTATGGTCAGCGAGTGCAGTACTCGGTATTCGAGATCGAAGTGGATGCCGCGCAATGGGCATTCCTCAAGCACCGGCTGTGCAACCTGATCGACCCGGAACAGGACAGTCTGCGCTTCTACTACCTGGGCAAGAACTGGCAGCATCGTGTGGAGCACGTTGGCGCCAAGGCTGTGCTCGACCTCAATGGCCCGCTGATTCTATAGCGCCGCCGCGAACCTGAAGTGGCCGGCTAAATCCCGGGCGGTTCGCAATTCTCTAACATCCTGATTTATCTGAATCTCTCCTGAGTGCGGGGAAGGTCGGCGCTTGTGTTTTGCCAAAATCGATCCCTTTCGCCGGAGCGAAGGATTTTGCGCTTATTGAACAACGAGTTATAAGGGGACA # Right flank : TTGTAGAGGGTCGGCGGGATGTTGATGGTGTGGGAGTCGGACCCCGCAGGTATGTGGATTCAAGTACCACAATTGAAAAATCTCAGTCACCCCGCGCCGACCGAGGCCGCTGCCGCCAGCCTTCGGAGTGCCCGTCTGCCAGGGTGGCATCACCGCCTCTGCCAGATCATCCGCCCCGTATTGCTCTCGGTGACCAGATAGGGCGCGCTGAAGTGGTAGCGGGCCGCGGGCTGGTAGCCGGCCGCACCGTTCAGTTGCACCAGCAGCAGGCCGTCGTCGCTGCGCCAGCGGCCGCTGTACTGCAGCTCGCCGGGGCGGTCGTAGCTCCATTCGCTGCCGCCGGCCACGGCGCGGCGCCATTGTTCGATGCTGCCGTCGGCGCGGATGCGCAGGGTGGTGACCGTGGTCATTGAGGCGAATTCGAGGCCCTGGCTGTTGATCATCTGTTCGTAGACCCAGGTGCCCACCAGGGCCGGGTCCTGGCCGGGAGCGGCCGGTGG # Questionable array : NO Score: 5.39 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.12, 8:1, 9:0.42, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCGCAGGGGTGCGTGGATTGAAACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //