Array 1 179463-180591 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP042243.1 Crassaminicella thermophila strain SY095 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 179463 29 100.0 34 ............................. ATAGGTTCGGTAAAAATTTTAAATGCAAATGAAA 179526 29 100.0 37 ............................. TTAAAAAACTCAATGATTTCATCAAGGCTCTCTGACT 179592 29 96.6 36 C............................ TTAAGCTTGGTAAAGGAGCTAGTATTCTCTTATCAG 179657 29 96.6 35 T............................ TAAACTTTAAATTTTTCAGCAAAACTGTTCCTACC 179721 29 96.6 35 T............................ AATAGCTCCCTCAATTCTTTAAGTGTCAATTTATC 179785 29 96.6 35 C............................ TTTTATCAGCTACTTTTGTAACTGCTTCATTAGCA 179849 29 100.0 35 ............................. GGTAATTATGAAGTTATTTTAAAACCTGTGAGTAC 179913 29 96.6 35 T............................ TTAAGGAAAATATACAAGATTTAAAAACTGCAAAT 179977 29 100.0 35 ............................. AAAAAATCACCAAGCAGACTATCATCTGTACCGCT 180041 29 100.0 35 ............................. ATTTTAGGTTCAAATTCAATTGTAAATGGAAAATA 180105 29 96.6 35 T............................ TGAAATATAAACGCTATACCTACAAGAAATCCGAA 180169 29 96.6 38 T............................ ACTTTTCGAAATGAAAAATTGATTCAACTATTGCATGG 180236 29 100.0 36 ............................. AGACAAACATTTCTTAGAGAAGCAGCATCCATCCCC 180301 29 100.0 36 ............................. AATAGAAAATATCTAATCCTATACCACTAAAAATAA 180366 29 100.0 36 ............................. GCATAGAGCTTAAGCGTATCTTCTAAATTCATGTTA 180431 29 100.0 35 ............................. TGTGATAGTGTTGAACAATTAAATCATACTTTCTT 180495 29 100.0 38 ............................. TATTTTCCAGCTTCATATTGACCTAGTTTAACTCTTTC 180562 29 93.1 0 ....................G..T..... | G [180584] ========== ====== ====== ====== ============================= ====================================== ================== 18 29 98.3 36 GATTTATCTTAACTATGTGGTATGTAAAT # Left flank : TATTTTATAGAAGATGAAATATATTTTCCTTTAAGGGCATGGTGGTAGACATGTTTGTTATTGTAACTTATGATATAGTAGAACCAAGGGTAATTAATAAAGTAAGAAAGATTCTTAAAAAATATCTTATATGGACACAAAATTCTGTTTTTGAAGGAAAGATTACACAAGGAAAATTGCATCAATGTCTTTCAGAAATAGGAAAAGTAGTTGACAAAAGTGAAGATTCCATATATGTATATAGAGTAGGAAATCACAGAAATGTGACTAAAGATGTTATTGGGCAAGAAAAAAGTTTTGACGAGTTATTTTTGTAATTGCAGTGAACCTATTTTTAAATCAATCTTATCTCAGGTATTGATAATACTTGTCTAGAAGTATATTGAAAAACAATATCATTTGCACGACTGAAGGTTTACTGCAAGAAGGTATATTTACAAGATTTCAATACTTGCTTTAATTATAGTAAAAGCAAGGGATATAAGCATGCATTAAAAGTG # Right flank : TATAGAACTACCAATGCTATACTATTATTATGATGTAGGATCATCTAAAAAACTAGAAAGGAAATAAAATGGATAAAATAAAAGTTTTAAAAAATTATATAAACACAAAAAATATTGATTTTATGCAGGAAATATCCCCTAAAGAATTGCTTGTATCACAAAAGGTAAGAGATGCTTGTATCAAAAATAAATGTGGTCAGTATAATAATAATTTTATGTGTCCACCTTATGTAGGGGAGATAGAAGATTTTTTAAAAAAATTGGAGGGATATACAAAAGGTTTTCTTATATTTGTAAAGGACAAGATAGATGACCCATCAGATTTAAACCAGTTTTATAAATCTGCTACAATCCTTCATGAGATTATGTTAGATATTGAAAAGAAAGGAAAAGAACTAGGATTTCATAAAGCATTTGCCTTGATAGGAGGGAATTGTAGACTATGTGATGTATGTAATGCTAAATTAGGAAAAGATAACTGCATAAATCCAAAAATGGCA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.94, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTTATCTTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 802002-802760 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP042243.1 Crassaminicella thermophila strain SY095 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 802002 29 100.0 37 ............................. ATGGCAAAAAATAAGCAGACGCTGAAGCAATGCTCTG 802068 29 100.0 38 ............................. ATTTTTTACTCTCAATAATTCAACAGAATTAATATTCG 802135 29 100.0 39 ............................. TTTTCTAGCACGATATGAGCATTGCCATTACTATCAAAG 802203 29 100.0 38 ............................. TAGCTAATTTTTCACCTTCAAATTCTTCTACAATTTGG 802270 29 100.0 37 ............................. TTACGAGAGATGAGTATTTAGAGTTATTGAAAAGAGA 802336 29 100.0 37 ............................. TTTTATTTGATTTATCTATTGCCCCTATTGTTATTAC 802402 29 100.0 36 ............................. ATTAATAGTTGAAGGTTCACATTTCATTAATTTTGC 802467 29 96.6 37 ............................A TTAGGATTCGTTTTTCTAAGCTGATCAAATCTATGAG 802533 29 96.6 36 ............................A TTATATTCTTAAAATTTTATATAACAACAACTATAT 802598 29 100.0 38 ............................. AAAGGAATGACAAGGTCAATTTCTTCTGTGTACGGCTC 802665 29 100.0 38 ............................. ATTACATTGGCTATATCTTTTGCTACACTCGGTTTTTC 802732 29 89.7 0 .......................A.A.G. | ========== ====== ====== ====== ============================= ======================================= ================== 12 29 98.6 37 GTTTCATAGTTCCTATAAGGAAGTGGAAT # Left flank : ACACCAAGAGATGCTGAATACTTAGCTTCTATAGAAAAAAATTTAAAAGACAAGTATGAAGCTTTTTATAATAAAAAGTATGACAAAGAGCTAGAAATAGAAATAATGGATGAATCGAAAGTATATAAAAAAATAAGAAAGTATAAAAAATGGGTATATGAGGGCTACATAATGGGGGTAATTTTGAATGGAAATAATGATATACTAAATTTAGCTTATAAAACAGGATTAGGTTCTAAAAATGCTCAGGGTTTTGGATTTGTAGAAACATTTTCATCATTAAATAGTTTGAAAAACTATATAAAAGTTGTATGATATTGCAGTAAGCCAATATTTTTTTTAAAAGCCTGTATTTAAGTCATACCAATTGATAGATATATATTTTTCAAAAAATCAAAAAACACTATCTGAGGTTTACTGCAAAAAGTGTTTGTTTCAGAATAATAGAAAAAGTTGAAAAGTAGTGTTTTCAGTCGGTATATTGAGTATATAAATTTGGG # Right flank : TTTTTCGATAGATGCTTGGAAATACCAGTTTCTCAGATGATTTTATTAGACGATTTATTAAAAGCAAATCAGCTCTTAGTGTAAAAGTATTATAGAAAAAAGTTGTAAATATTTGCTACATGTGATATACTACATAAGTTGGTTTATTATTTAGATTAATATGGGTAGTGTATAACCAAGTAATTTTTACAATAATCTTATCATTATTTTCAAAATTATTATGGAGATGCTTTTCAGCAAATATCTAAGTGTACAAGAACTTAGATATTTTTTTATACTAAAAATCCGTAGACCTATTCTTAAAATCCCTATAAAAAGTAACTAAATAACCGATTGTTATGCACATATGGTTGATATGTTAGTTTTTGTTTTGTAATAGATGCTAAGAATCGGATAGTGGCTTAAGATAAATAATATACGAACAAAAAATCTTAAAGGGGGTGTCTTGATGACACAAAGTATAATATTTGCACTTATAGGTGTGTTTTTAATAACAGCTT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCATAGTTCCTATAAGGAAGTGGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.10,-3.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //