Array 1 5546-4768 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPUD010000012.1 Campylobacter concisus isolate 2009-42653, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 5545 37 100.0 37 ..................................... CAAAATCGCATTAAACATTGCTCTTTTTCATCAAAAT 5471 37 100.0 41 ..................................... AACTCTGATTTTGCACTTTTAGATAATTTTGCATTATCAAC 5393 37 97.3 34 ................................A.... AGCTCACTTTGTAATAGGTCGTGAGGCATTGGTT 5322 37 100.0 39 ..................................... TCATCGTAATAGTCTGCGTGCTTAGTTTCTCTATTCTTA 5246 37 100.0 37 ..................................... GATGTTAGAAATCAATTTATACTTAAAGGAAAAATTT 5172 37 97.3 39 .................T................... CAGATCTTTCGATCTTCCCTCCGTTCATTTCTAATATAG 5096 37 97.3 38 ..................T.................. GTGAATTCGTCTTTGTCTAAGTACCAGAATGGTTTTTT 5021 37 91.9 37 G.....................TT............. TTTAATGCGATCTTTGATCCGTCGCTAGCGGTTTTTA 4947 37 86.5 25 .......................GC..TA...T.... AAATTTGACCCGATCGCGGTTTTTA TTTT [4916] Deletion [4886] 4881 37 100.0 37 ..................................... GATGTTAGAAATCAATTTATACTTAAAGGAAAAATTT 4807 37 94.6 0 ....................C...............A | AA,C [4773,4776] ========== ====== ====== ====== ===================================== ========================================= ================== 11 37 96.8 36 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : GTTTCTTAAATAATTTTGCTAATTTTTCCTTTGCAAAAATAGTCTTTTAGGC # Right flank : TGGTAAAGCGTAGGCGCTTTATGTTGTTATTTGTAAAAATAAATGAGTGGTGCTTATATGCGTTTATTGGATAAATTTAGATAAGAATAGATTGGCTTAGATTTATGAAAAACTACAATAAAGATAGGTTTTTGCGATTTGCGTAGATAAATAAAAGATACGAAAACGAGCCATGAATTTTGCTTCATGGCTGCATGGGCCAACTATTTAGAAGTTGGCTTCATGCGAAATGTGCCCTTAGTGGTTTGGACTTTGGTATAGCCACCAAAGCTTTGACCCACTTTTTGATGAGCACGAGCAGATGAGTAAGACCTGCTTGAAGACGATGAAGAAGACTTTGAATAAGAACGTGAATAGCATTTTGCCATTTTAACCCCTTTGTGTTGAATTATTTTGTTTTGTTGGGTGAATTATAAAGTGGTGTGTGGACATATTGTGTATAATTCTTAATAACTTTAGAATATAAAGGATAAAGTAATGGACGCCCAAACCAGGATACT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 268883-269592 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPUD010000003.1 Campylobacter concisus isolate 2009-42653, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 268883 37 100.0 40 ..................................... TTGTCTCCGTTCATTTGTAGAATTACTACTTGTGCCATGA 268960 37 100.0 41 ..................................... TCATCGCAGCCCGCGAAACCGACAACAGCACGACTATTAGG 269038 37 100.0 34 ..................................... GCGCTACCTATCCCTGGGTACCCAAAGAATGCGC 269109 37 97.3 34 ......................A.............. GGATTAACTGAGCGAGAGCCTGATGCTTGTGGCC 269180 37 100.0 40 ..................................... AATTTTTCACTTTGAGTTCTATGTTTCCATGTAAACTCAC 269257 37 94.6 39 ......................TT............. CATTATCTATCTCTATGGTTTGCAAATCCATCTGTTTGT 269333 37 94.6 37 ....................G..T............. AACTCAACTTCAAGGGGCACAGCTTCGATGTATTTAG 269407 37 97.3 38 .......................T............. ATTAGCACGACTACCGCCATATTGTATGGTCTTGTTTC 269482 37 100.0 38 ..................................... ATTAGCACGACTACCGCCATATTGTATGGTCTTGTTTC 269557 36 89.2 0 .............................GC.-...T | ========== ====== ====== ====== ===================================== ========================================= ================== 10 37 97.3 38 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : GCTTTGAGCTATGCGATAAAAAAGGTATCTTTGAGATGCAAGAGCTCTTTGTCTAGCTTATGTTGTTCTTAAATTTCTTTTGGATTTTTGATTTGCGAACTTTTTTAGCTGAAATTTGACCCTTTTTAGCTAAAATCTCGCGAAATAGGTTCGCAAATCTAGTTTTTTTCAAAATATCTCTCATACATTTGCGAACTTTTAGTTATGCCTAAGTTTAGGATAGCCTATTTTAGGACCTTGCGAAACTTATATACCGCTTAAAGTTCGCAAACCTATAAAATTTGAAATTTTTAAAAGAGATTTGCGAACTTTTTTAAGATGACAAATGCCTAAATTTATGGGTTCTTTCACTTATCATTGTTAATTTTATGGAGTTAGTATTTTTAAATACCTATACATTTGCGAACTTTTTGAGCTTTTCACGAATTTTAGGTATCTTTAAAGCCAGTTTCTTAAATAATTTTGCTAATTTTTCCTTTGCAAAAATAGTCTTTTAGGCT # Right flank : TTCCATAATCCATATATAAATTTAGGCCATTTCGCTTACATAAAAATTGTAAATCTTTTTGCTGTCATTTTTTGTGACGTATCTTGTCCATGTTTCATTTTAAATTGCTGCATATTTACAAAAGGAAGAGTAATGAAAATAATAGCAAGAGATGTGATAATAGTGGCATCTATCAAAAGAAACATCAATCTACAAGCAAGAATTGTAAAGTCAAAAAAAGATCTATATAAGAAAGCAAAAGCGTTTAAATTGTCCTAAGCTTGAATAAGTCTATTACCAAAAAACACTATGATGCCTACTCAAATGTGATCCAGTATCTCTATCCGTTTCAAGTGTTTTAAGTGGATTAGCCAAAATAGTATCTAGCAAAGATAGAGTATAGTCGTCAGCACTTTTTATCGTAAAAGTATTTTTCGCAATTATTTTTTTACACCAGTGATATTATCATTTATGATAACTTTTGAGTAGAAATATTTTAATGTGAGCTTGGTATTTTTAAC # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //