Array 1 21517-17345 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJMT01000007.1 Neisseria sicca VK64 ctg120005024822, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 21516 33 97.0 33 T................................ CATCGGATAATCAGAATCAGCCTGCACTAAAAT 21450 33 97.0 35 C................................ CGTACATAACCAGTTTGAACACTATACAAGGCTGA 21382 33 97.0 34 G................................ ACTTCCATCTTATCGTCAACACCCGCGAAGACAT 21315 33 97.0 33 C................................ CGACCAAAAACGACGACTTTTCTGTCCCTGAAA 21249 33 97.0 33 T................................ TTCTCGAAATACCGCTTGTCTCCCGATACCATC 21183 33 97.0 33 T................................ ACATTTATAGCAACGATAAAGGGCTTTAAGAAA 21117 33 97.0 34 C................................ ATTTAAAGCTCCCAAAAATAAAAAAACCGCCTGT 21050 33 100.0 33 ................................. AACTTAATCAGCGGCGCGCCACCGTTGCCGATA 20984 33 100.0 33 ................................. GACGTTTCGGATACCCTGCGCAAAACAGGCATG 20918 33 97.0 35 G................................ CATTTGGTCTTTGCGCTTCTCGATAACCAAACGCA 20850 33 97.0 33 G................................ CCACCTCCCCTCGTGGCTCAACCAGCTCGACAT 20784 33 97.0 33 G................................ CCGAACGTTTGGGCGTGGGCGAATGGAAAGTCA 20718 33 100.0 36 ................................. AGTAACCCGAATCGACGTAGCTGAAGATATGCAAGA 20649 33 100.0 34 ................................. ACAAGTAAAAGGCGGCGCACGAGGCGACGCCGAT 20582 33 97.0 35 G................................ ATCGGCATATGCTGCAACAGGCACAAAAAAAGCGA 20514 33 97.0 34 C................................ CGCGTTACATAATCCAAAACCCCATCTACCGCGA 20447 33 97.0 33 T................................ TTCCATTGATACCGGCAGTTTAAATGGCATTGA 20381 33 100.0 34 ................................. AGTAGCGTCGCGCCGTTGGTGTGAAAGCGGAAGT 20314 33 100.0 34 ................................. TGCTTGATACCATCGCGGAATACATGGGCAAATC 20247 33 97.0 34 C................................ CGCACCGCGATACTTCCAACCTGCCGATCTAAAC 20180 33 97.0 34 T................................ TATATGCGCCGGTCGCAGTTTCGGACGATGCGCC 20113 33 97.0 34 G................................ ACGGGCTTTTTTTATGGGCGGTCGTATGAGCGAT 20046 33 97.0 35 T................................ CTCAACGGCTACGCCGCCCCTTTTGCCGTTTGCCA 19978 33 97.0 34 G................................ TGCCATGCTGTCGAAGACGCAGAATTTCCGAACG 19911 33 97.0 33 G................................ TAGAGAAAGTTGATTGGAAGATGTTTGTGGCGC 19845 33 97.0 33 G................................ TAAAGCGGTTTTAAAGTGGGTATTTTTATATTT 19779 33 97.0 34 T................................ GAAAATAACGGGCGCATGGGCGTTCCCCGGCGAA 19712 33 100.0 35 ................................. AACTCGTCGCGGGCGGTAACGCTGCCGCCGATTGA 19644 33 100.0 33 ................................. ATTTTTCATCCTTTTTGCGTAGTAATGTGGGTT 19578 33 100.0 36 ................................. CCGGTTCGTGGTCGCCTAATTCGATTATTTATGCAA 19509 33 100.0 34 ................................. CCGCGCAGGATTGGCGAACGACTACCACGACAAT 19442 33 97.0 35 T................................ TGGACAATACTCAATCGGGACGCCATGGAAGTACA 19374 33 97.0 33 G................................ GCCATTTCCACATCACCGTCAACCGACGAATCA 19308 33 97.0 36 G................................ GATTCTCAGGCTTTTCGCATCGGAATATTTCGTACC 19239 33 97.0 33 G................................ CATGACGGCATGACCGTGAACGAAGCCGAACTG 19173 33 100.0 33 ................................. CTGAACTTGGTCAGCTCGGTATTGCCCAGCTTG 19107 33 97.0 33 T................................ CAGTACGCGCTCAGACATCTGCTGAGATTCGTC 19041 33 97.0 33 C................................ TAACCAACAATGCCCGCAACATCGTTTCTCAAA 18975 33 100.0 34 ................................. CTTCGCTGTGTGTAGTACCACTTCTACTGATACC 18908 33 97.0 36 C................................ TTTTGATTTCCTCGGCGGTCATGCCTGCCTGCTTGC 18839 33 97.0 32 C................................ CCGCCCAAACTGACGACTTGACTAAGCTCGCT 18774 33 97.0 33 G................................ CATGTTATACAGAATAAGGGCGGCCTTCTGCCG 18708 33 97.0 33 C................................ GTGCCCTACGCAGCCGGGGTGTTGATGAGATTT 18642 33 93.9 34 G........A....................... AAAACGTCGTCAAAATACTGACCGAACCGCTGTA 18575 33 97.0 34 T................................ ACTAAAGAGATTTACGCATTTCCCGATAAAAACA 18508 33 100.0 36 ................................. CGCAAATCCAGCGGGTAACGCTGCATGACAGTTGGG 18439 33 97.0 33 G................................ AGCGGTCGTCTTCGCGGCGGTTGCGTCGGTCTT 18373 33 97.0 34 C................................ ACATTAACCCTGATTTTTGACTGAAAGGAAATCA 18306 33 100.0 34 ................................. AGCCAAGATTTCAGGCTTGGTACTCTCATAATAA 18239 33 97.0 33 C................................ AAAATCCACCGCATCAGAGGTAAACCTCACGCG 18173 33 97.0 32 G................................ CAATTCCACTTTTTTAGCTTCATCGCCGTATT 18108 33 93.9 33 C...A............................ TTCGACAATCTGTTCTCTTAAATCCATTTCAGA 18042 33 97.0 34 C................................ AAGCCCGAAACGTCCATCACGGCGGCAAACACTT 17975 33 97.0 33 C................................ AACCCGTACAAAACGCAGACGACAGAAGCCGCA 17909 33 100.0 34 ................................. GTCTGAATAATACACCTGGTGCACCGTTGATTGG 17842 33 100.0 33 ................................. GCCGATACCCGCACCTTATCCGCGCAAATCTGA 17776 33 97.0 33 ............T.................... ATTCTGATAACCCAACATCCCCGCCTGATAGAC 17710 33 93.9 32 G...........T.................... AATTCTTTAGCCATTTGTTTCACCTAAATCTT 17645 33 93.9 34 T...........T.................... TACTACGAAGATAGTAACATCGAAATTTCCCGAA 17578 33 97.0 35 ............T.................... TTACCCATATCATCAGAACCGCCCATCTTTGAATT 17510 33 97.0 33 ............T.................... GGTCACACATACGCGCGGAATCGCGCCGATGGC 17444 33 93.9 34 G...........T.................... CTATTTATCCGTTGGAAAACCGGCGGAAGCCTGT 17377 33 87.9 0 G...........T.........G..T....... | ========== ====== ====== ====== ================================= ==================================== ================== 63 33 97.4 34 ACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : TGCACATGGGAATACAAAATGCTGATGCTGATTACTTATGATATTTCGCTGGAAGACGCGGAAGGGCAGGCAAGGCTGCGCCGCGTGGCGAAATTGTGTCTGGACTACGGCGTGCGCGTGCAATATTCAGTGTTCGAATGCGACATTGCGCCCGACCAGTGGGTTGTTTTAAAGGACAAACTTTTGAAAACCTACAACCCCGAAACCGACAGCTTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCACAAAGTGGAACACCACGGCGCGAAACCGGCGGTGGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCCAACCTGCGGTTCTCATGAAAATGCGGCAGGGTTGGCGAATTGGGATTGTTCTTTAACAATCAGGATATTGCGAATGCGGGTGTAACGGAAAAGGCTGTGTTATACTCGCGTTCGCGCTTTTCTTGTGAGCCTAGCGAAATCGGGGCTGCTAAACCTGATGGAGCAAGGGTTTTGAGAGAGGC # Right flank : TGAATAAGTAAGGGTAATCTATGCGAAACGCCGTAGCCAGCCGCCTTCAAGCAGCTATATATCAGTACAACTCAGAGATTTCTTACAACAAAGGTCGTCTGAAAACCTTATCAATCGGTCTTCAGACGACCTTTTTCAGCCATCAACATAAGCCCGATACTTTGGAATAGGCTATGGGCATCAGACAGATAGGTCAGCCGATTCGGGCATCAGAATTTCACACCTTTATGTAAGGCTACGATGCCTGCGCTCATATTATGGTAATCAACGCTGTCGAAACCGGCATCCAGCATCATTTGTTTCAATGTTTCCTGATCGGGGTGCATGCGGATGGATTCTGCCAGATATTGATAGCTGTCTGCGTCTTTGGCAATGAGTTTGCCCATGACCGGCAGCAGTTTGAAGGAATACAAATCGTATGCGCCTTCCAGTGGTTTGTAGACTTTGGAAAATTCCAACACCAAGAGCGTTCCGCCCGGTTTGAGCACACGGTACATTTC # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.31, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //