Array 1 781991-779502 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYNC01000001.1 Photobacterium phosphoreum strain AK-4 CFSAN065476_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 781990 28 100.0 32 ............................ ACCAATTTTTAAGCGACCTTTACCATCATCAA 781930 28 100.0 32 ............................ GTATGTAGGTTATTTAGCTGACCGCACCGATT 781870 28 100.0 32 ............................ CGAGCCTGATGGCGCTGATTTAACAGCTGTTA 781810 28 100.0 32 ............................ TGAAATAACATCCTTATATTGAGGATATTTAC 781750 28 100.0 32 ............................ ACATTCTACGTTACAACGGCAGGGTGGAAAGC 781690 28 100.0 32 ............................ TTGAAAATAAGTAAGTAAAGCATGTAATGATT 781630 28 100.0 32 ............................ TATTCCACCTACACCTGAGCCTGATGGTACTG 781570 28 100.0 32 ............................ TTAAAGACTTCCATCATTTTGATGATATTTTG 781510 28 100.0 32 ............................ AACGCCAGTCACTTGAGACTTGACCGCCTCGA 781450 28 100.0 32 ............................ CGCGTCCGTATCGCCTATTAATGCGTCGGTAT 781390 28 100.0 32 ............................ GAAACCAATACATTTGCCTTTATCATTTTCCC 781330 28 100.0 32 ............................ TTGAACAAGTCTCCCCTTATAACAACATAAAC 781270 28 100.0 32 ............................ AATAAAAAAAGGCGCATAATGCGCCTTTTTTA 781210 28 100.0 33 ............................ AGAGAGATCAATATAATAAAAAGCAAGATCTAA 781149 28 100.0 32 ............................ TTACCAGAATTTAAAGTTATATATGATTTAAC 781089 28 100.0 32 ............................ AGCTTGCATTGATTGATACTGCCAACGGGGCA 781029 28 100.0 32 ............................ AAAGCCTAGAGCAGCAATACCAATCACACCCA 780969 28 100.0 32 ............................ GCTTGATATTATACAAAAAAGGTTAGGGGAGA 780909 28 100.0 32 ............................ GCAACAAGATAGTGCAGGCTCTCGGGTTATCG 780849 28 100.0 32 ............................ ATAATCATGAAATCGAAAATATCGGTATGGTT 780789 28 100.0 32 ............................ TAAAATGTGTCCTATATCTCACTTAATTGGTT 780729 28 100.0 32 ............................ ATTAACATTCCAAACGTTACCGATGATGCATT 780669 28 100.0 32 ............................ GCAAATATTAATGAAAATATTGCGAATCCGTT 780609 28 100.0 32 ............................ TGCTGATAACTCAGCGACTAACCCGAATAAAA 780549 28 100.0 32 ............................ CTGACGAGACATGGCACATCGCGACTAAACCT 780489 28 100.0 32 ............................ TAACGATGAAATACTTCACGCCATGGAAAGAG 780429 28 100.0 32 ............................ CATTACTGAAACGTTAGAATTAAATTATTGAT 780369 28 100.0 32 ............................ TAAAATGTGTCATCTAAACACCTAAAATAAGA 780309 28 100.0 32 ............................ GTACTTTTAACTCACTACCTAAGCATGACAAT 780249 28 100.0 33 ............................ ATGCGGGTAATTGCCATCGTTTCCAACAATTTC 780188 28 100.0 32 ............................ ATTGCTTGCGATGCAGCAAGATACATGTTCAT 780128 28 100.0 32 ............................ AGAGTCGTAACTACGAGATTGTAGCTATCGCT 780068 28 100.0 32 ............................ ACCATTCAGGATAAAAAATAGTGGTATTTGTT 780008 28 100.0 32 ............................ CAGCGACGGTTCAATCGATTCGATATTGATAC 779948 28 100.0 32 ............................ GATGTGGTACACGGGGTGCACTCACGCAATCC 779888 28 100.0 32 ............................ TGTACGATCAATTGCACGATCAAGATTAATAA 779828 28 100.0 32 ............................ GTACAATGTCACCAAGCCACTGTTTTGATCAA 779768 28 100.0 32 ............................ AAAAACTTTTGAACATCCTTAGCCCAGGTAAC 779708 28 100.0 32 ............................ CACCGCGCATCATTCATTGTATAGTGCTCGCC 779648 28 96.4 32 .............T.............. TGTTATACAGATCTGATAAGATGATCGTACAA 779588 28 100.0 32 ............................ CTCAGTAACAACGTTTGCAACAGTTGATACTT 779528 27 85.7 0 ....................G..T-..T | ========== ====== ====== ====== ============================ ================================= ================== 42 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TCTACTTCATTGGCTGAGAATAACGGCGTTCCGCCACCACCACAAAAACCCACCAGCACCCCTGCTTTGGCTAATTCACGCATTGCCGCTTGGGTAATCGATGTGCCTGTTCCGAGCATTATTGCAGTCGTGTTTGCTATCGGAATGTTCCAATATAACGATTGTTTACCTTCGTCAGTGACATATTCAACCCGCCCACCATTCACTAACACGCGACAATGTTGTAAATAATAAAGATTGGCACGTTTTGAATGAATAATGGTTTTCAGCTCACTCGGTGTGAAAGACTTAGCGCACATAGCGGTCACCAACAGTAAAAAATGCATTATATACACAGATACGCATAATGCGTTTAGAGTGTAATCACAAATACCCTTTTTATTTGGTAACTATTCTGGCTATATAAAACAACAACTTAAAATATCAGTTTAAAAAAGGGTTTTTGGTGAGAATTTACTGTTTAGCTTTTATAAGCAATAACTTATACTAATAGTGCTTCA # Right flank : TACTGGCAGCAGCCATGGCTTCTTTAATTTCATCAGAGCTATAACCTTTTGATGACAGGTAGGCATAGGCTTTACTTTTATCTTTAAAATTCGACAGGTCAAACCGTTTTTTCGCTAACACTAATTGGCAATTTTCATAAAAATCGACCTCACCCGCTTCCTCTAAATCATAGAAGACTTGCTCAAGATTAGTAATATCAACATGCTTCATTTTAAGCTCTTGCTTGATCACTGTTTTGCCTTTGAGCTTACGGACTAACTTCAACACTTCTGTTTCAAGATCGGCATTCATGCCTTTGATTTTTGCTTTAGTTAATAGCGTATCGGCAGCATCGTGTTCCGCAATCGCTCTTGAAATATCTTGAAAACTGTATCCTCGCTTAGTGAGATCGTTGGTTATTTTCTCTTTGGTCGTTTGACTAAAATCATCATAACTATTTAAACGACTTTTGATCATATCAAGTTCAGACACTTGTTTTTTCTCCATAATATCAACTAAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 790558-791186 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYNC01000001.1 Photobacterium phosphoreum strain AK-4 CFSAN065476_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 790558 28 100.0 32 ............................ GTATATCATGCCGCCTATGGATGCGGTTAATT 790618 28 100.0 33 ............................ TCGCAGCTGCCGCACCAAGTTTTCATGGCCTAA 790679 28 100.0 32 ............................ CCATTCTTCATTGAGCTGTTCAATACTTAGTG 790739 28 100.0 32 ............................ TGGGGTGGAGTCAGCCACATTTTAACTGACGC 790799 28 100.0 32 ............................ TAGTTAGTAAAAAAAACGGAGAAAAAACTCGC 790859 28 100.0 32 ............................ TGGTTCAATCGTATGATCGACGGTTTCGACTA 790919 28 100.0 32 ............................ GTAAATATGTTTAGGCCGAGATACTATAGATT 790979 28 100.0 32 ............................ ATCAGAATAGCCGTCCAGATAAGCCTCTTTAT 791039 28 100.0 32 ............................ TGAGTTTTATGCGCCTTTGCCTAAATCCCATT 791099 28 100.0 32 ............................ ATTTGGCAACGCGGGATGCTTAAATTCTAGTG 791159 28 96.4 0 ..............T............. | ========== ====== ====== ====== ============================ ================================= ================== 11 28 99.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ACGGCTATTATCGCTATTCCAAGTGAGATTAAGGGTTATCAAACTGTAAAGCGTGTACAAGCAAAAACTGCGAATAATAAGCGTAAGCGGTCGATAGCCAAAGGTTGGATCAGTGCGGATGAAGCGATTCATGCAATTCCGAACACAGCAGAGCGTAGATTAACCTTGCCTTATGTTCAAATTCAAAGTTTATCTAACCAGAATGCGATGCGGGTATTTATTGAGCACAGCAAGGTGGTTAGTGATGTAACTGACGGTGCATTCAGTAGTTATGGATTAAGTGCCACCGCAACGATCCCTGTTTTTTAAGTGTTGTTTTGATCGTAATAGCAACGATGGGTTAAGTGATTATTCATTTAACCCTTTTTTTTAGCCGCTATTACTTTCATTTAAAATCAATAACTTAAAATTAAAGAATAAAAAAGGGGTAAAAAAGGGGTAAAAGAGGGTTTTTGGGGTTTTATTTAAATGAAACAATCGCTTATTATGGTTAAGCTTCA # Right flank : ATAACTAAAGTACACCGCGAACGTATTCTGCTTGTTCACTGCCATATAGGTAGACATATGCGTTAGCCGCATGTTTATTCAATCTGACAAACACAAAACATTTCGCTAATAAGCCATATTATTCATATTGTTAATAACTGTTTTCTAAATCGTTGTAGGTTGGGGCAGCGATGTTTACTATGTGCCACAAAGGATTTGTCGCTGTTCGGTAAATAAATGAAGAAAGATAAATACAATAATATTGCGGATCATATTTTTAAAGTAGATGCAGTAAAAATAGCGGTTTATGAGGTTATTACGCATAAGATGACAGCATATAGGGCTGAAATTGTGTATGGAGTAACGCCTAACACACTGAGTCGTTATGTTAAAAAACTTAATATCGAGTTAGAGTATCTACAGGCTTTGGGTGTAAAAACTGAATAATGTTATATGAAGTCCAGCGCCTGCTGGACTTTTTGTTATTGGAACAAAATCCATTGATAGTCATGATTATTGAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //