Array 1 25382-26508 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUBX01000003.1 Escherichia coli strain CVM N38733PS N38733PS_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25382 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 25443 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 25504 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 25565 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 25626 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 25687 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 25748 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 25809 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 25870 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 25931 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 25992 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 26053 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 26114 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 26175 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 26236 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 26297 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 26358 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 26419 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 26480 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 19 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 883-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUBX01000184.1 Escherichia coli strain CVM N38733PS N38733PS_contig_184, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 882 29 100.0 32 ............................. CCGATAAAATGCAAAAAACGCGGCGTTTTTTG 821 29 100.0 32 ............................. AGGCATCGCATGTCGCCATTCCGATCGGGGAC 760 29 100.0 32 ............................. GGGGTATGAGGGCGCGATCGTGGTACAGGAGG 699 29 100.0 32 ............................. CGTAGCGCCGCAGAGCATTTACGCGAGTTATT 638 29 100.0 32 ............................. GAGCAACAAAACAATGAATCCAACGGATTGCC 577 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 516 29 100.0 32 ............................. AACTCTCACCGGAGCAGAAAAAAAGAAACCAG 455 29 100.0 32 ............................. GCGGACGGCAAAACAATCGGGAGTCTGGACAA 394 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 333 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 272 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 211 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 150 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 89 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 28 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : C # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //