Array 1 24200-21656 **** Predicted by CRISPRDetect 2.4 *** >NZ_OAIU01000020.1 Neisseria meningitidis strain Neisseria meningitidis isolate 22782, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 24199 36 97.2 30 ........G........................... TTCCCATCTTACTCTCCCCTTGCCACTCAA 24133 36 100.0 30 .................................... CTCAACATTGTTGTAATCTGACCGCAACGC 24067 36 100.0 30 .................................... CTCAACATTGTTGTAATCTGACCGCAACGC 24001 36 100.0 30 .................................... CTCAACATTGTTGTAATCTGACCGCAACGC 23935 36 100.0 30 .................................... CTCAACATTGTTGTAATCTGACCGCAACGC 23869 36 100.0 30 .................................... GGTCAGATTATAATAACGTTGAGCGCGTGT 23803 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 23737 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 23671 36 100.0 30 .................................... ACTCCCTGTTTATCGGTTTTTCAGCTTAAA 23605 36 100.0 30 .................................... ATAAGATGGGAAAATTACCATGAGGCCTGC 23539 36 100.0 30 .................................... AACCGTCTGCACCGTAAATGTAATCAACTT 23473 36 100.0 30 .................................... ACGGCATTGTTTATAGATTCCTCACATATT 23407 36 100.0 30 .................................... CTGCGAACATGGCGACTCCTGTTTATTTAA 23341 36 100.0 30 .................................... ATGAGATTTGCCGTCTGCTGTTTGACGACT 23275 36 100.0 30 .................................... ATGTACATGATTTGGCAGGATGGGCATTGG 23209 36 100.0 30 .................................... TTTCTCTGCCTGTATCAGGTTGCACAGGCG 23143 36 100.0 30 .................................... CGGCATCTACGACGAGGACGAGGCACAGCG 23077 36 100.0 30 .................................... GTAAGTGCTTTATTCATTATGGTTTCCTAG 23011 36 100.0 30 .................................... CTAGCTAGTTAGTTATGCAATCGGTAAGTC 22945 36 100.0 30 .................................... TGGATTTTGCCGCCGACGCAGAAAGCTGCA 22879 36 100.0 30 .................................... TTTGCTTCCTTTTAAAACTGTTTTGACAGG 22813 36 100.0 30 .................................... GGCTCGAAGTACCGCCCGTTATCCGCGCAG 22747 36 100.0 30 .................................... GGCTCGAAGTACCGCCCGTTATCCGCGCAG 22681 36 100.0 30 .................................... GGCTCGAAGTACCGCCCGTTATCCGCGCAG 22615 36 100.0 30 .................................... GGCTCGAAGTACCGCCCGTTATCCGCGCAG 22549 36 100.0 30 .................................... GGCTCGAAGTACCGCCCGTTATCCGCGCAG 22483 36 100.0 30 .................................... CTATTGCGTCAGCAGCAGCAAGAAGTCCGT 22417 36 100.0 30 .................................... CTATTGCGTCAGCAGCAGCAAGAAGTCCGT 22351 36 100.0 30 .................................... CTATTGCGTCAGCAGCAGCAAGAAGTCCGT 22285 36 100.0 30 .................................... CTATTGCGTCAGCAGCAGCAAGAAGTCCGT 22219 36 100.0 30 .................................... CTTGATAAATGCTCCCCTGTTCTGCTAGAG 22153 36 100.0 30 .................................... CACGGCAGGCAGAGCGTTCACGCTCAATTT 22087 36 100.0 30 .................................... TACAACCCAATCGGACAATACCCGAAGCAG 22021 36 100.0 30 .................................... AAAACTTTTTAGGGGGTCGGAAAAAAATAC 21955 36 100.0 30 .................................... AAGATGCGAAAATTAGCGCGGGACAGTGGT 21889 36 100.0 30 .................................... TTTTTTATTTTAATTTTTTATCCCCCAATG 21823 36 100.0 30 .................................... AGTTTTTAAATTTTTGATTTTGATTTTTTT 21757 36 100.0 30 .................................... GCGTGATAAACGGCTTGTTCATGTTTCTGT 21691 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 39 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGATATTGTGCTAGAAGAAACAGAAAACGAGCAGAACAATGATTTCAGGCTGCCTGAAAATTTAGAACACTTTGATATTCAAATAGAAAATGTTTCTTTTCGCTATGCTGAAAATGAACCATACATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //