Array 1 4223384-4229112 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031463.1 Xanthomonas oryzae pv. oryzae strain PX086 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 4223384 31 100.0 35 ............................... AACTGGGCTAGCCCAAAGCAGCGGTCCGCCTTGCT 4223450 31 100.0 34 ............................... TGGCCCTGTGCAATGACCCATTGCCACTGGCATC 4223515 31 100.0 36 ............................... TGCAAGTCCGAGCCCTGTGGGTTGATCCCTGAGCCC 4223582 31 100.0 34 ............................... GTGCTTATCCTCCGTGGCTCTTCCATAATCACAC 4223647 31 100.0 35 ............................... GTGCAGTCACTTGTTGAGAGTGGCAAGCAGACTGA 4223713 31 100.0 33 ............................... CTAAAAACAAGCTCAGGCTAGAGGGACGGCGGA 4223777 31 100.0 35 ............................... AACTGGGCAAGTCCTAAGCAGAGGTCAGCGCTGTT 4223843 31 100.0 34 ............................... CACCGTAACACACCCGTCAGGGGATCATAAGCCA 4223908 31 100.0 34 ............................... TGGGTGCAGCATTTTTAGGGGATGTTGAGCACAA 4223973 31 100.0 36 ............................... TTGGTTGGCGCCTTTGACCTGGCTGCGCAGATCTTT 4224040 31 100.0 37 ............................... TCTGCTGCTTTCGGCGTGGATTACAACAGCCTCAGCG 4224108 31 100.0 34 ............................... GCGGGCAAGGCGCTGTGGCGGGAATGTCAGAAGG 4224173 31 100.0 34 ............................... ACCTTGCAGCCCTTAGCTTTGCAATACCCCTCAT 4224238 31 100.0 35 ............................... AGCACTGTGCTTGGCGGTATCGGCGGCGGTGCAGG 4224304 31 100.0 34 ............................... GGTGGCAGAGTATATGCAGATATCCCACCCGATT 4224369 31 100.0 36 ............................... TTCGGCGTCCCGCCGAGCATGATTGGGCACAGCAGT 4224436 31 100.0 36 ............................... TGTTGGTGACGCGCCACCTTCCACGCCCGGTGATGG 4224503 31 100.0 34 ............................... GTGCATTACTTCACCAAAGATCGCGCCGACCCCA 4224568 31 100.0 36 ............................... CGGGGTCTTATAGCGATAACTGGACGATCGAGCAGG 4224635 31 100.0 34 ............................... ACCTGTGGCGCGTGCGTATCACCGACCGCGACGG 4224700 31 100.0 34 ............................... TCGCGAATAGGCGCGGTCCAGGGCCACGCAGTGG 4224765 31 100.0 34 ............................... CCAGGTAGGTGCCAGTGGCCACAACTTGGAAGAT 4224830 31 100.0 34 ............................... TGGTTACAGATGATCATGGGCGATCAGGCCGACA 4224895 31 100.0 36 ............................... CGCAAACCAGATGGCAAGTGGCAGCGGGGCAGCAAC 4224962 31 100.0 33 ............................... ACTAGCAGCCAGTTTGGCAGGCTGCTTTGCAGC 4225026 31 100.0 34 ............................... AGGAAACGGTCGCCATTGGGCAAGCTGCGGCGCA 4225091 31 100.0 34 ............................... TTGGGAGCCTATTAATAACATCTAGGACAACCCG 4225156 31 100.0 33 ............................... CGTCAATTGTGGTGACAGTTGTTTGCAGGGCAC 4225220 31 100.0 34 ............................... TTGCAAAAAAGCAGCCAAGCCGCCGGGAGTTTGT 4225285 31 100.0 35 ............................... CCATTTACACCAAGGCCTGCCGGCGAGGTTGCATA 4225351 31 100.0 34 ............................... TGACTATGACTCTGTCGCCCTGGCTGCGCCGTAT 4225416 31 100.0 34 ............................... CGCCGACTCTAGGGCAATGCGCGTTGCTGGAGGG 4225481 31 100.0 35 ............................... AAGCTTGATCTTGTTGGCATAGGACCAGCGCGGAA 4225547 31 100.0 34 ............................... GTCTGGAATACACCACTTACCCGACTCATCCTGC 4225612 31 100.0 35 ............................... CTTAATCCCGGAGATGTATACGCCACTTCGCCGGC 4225678 31 100.0 35 ............................... CACGCCCGGTGATGGTGATGGCCACGGTGATGACC 4225744 31 100.0 36 ............................... GCCTTGCTCATGCCGTTGGCGCTGTAGTCCCCGTAG 4225811 31 100.0 34 ............................... CCAGATGCTTGACATGCATGAGCAGGGTGTGTTA 4225876 31 96.8 35 T.............................. CGGATGTTCGCCGGCGTGCATGTTGTATGGCGCAC 4225942 31 100.0 34 ............................... CTTGAGGACTCGTCGGGCCGCCAGCTGTCTGTCC 4226007 31 96.8 34 ...T........................... TGCTGCATGCTTGCGTGCCAATGTAACCTGCACA 4226072 31 100.0 34 ............................... ACGGTGGCTGTTAGCTCCAGTACTGTGCTTGCAG 4226137 31 100.0 33 ............................... TGGCTGATCAGGCTGCTGGAGTAGATCCAGCTG 4226201 31 100.0 34 ............................... ATATAGATACTGCCTGCACCTAGGCTACCCACTA 4226266 31 100.0 34 ............................... TGCATCGCCTCGGCGAGCGCGATGATGAGCGCGC 4226331 31 100.0 35 ............................... CCATTTACAGACAGACCTGAGGGCGAAGTGGCGTA 4226397 31 100.0 33 ............................... CCAAATCGGAGGTCTGCACTGGCATATGCTGAC 4226461 31 100.0 33 ............................... GTTAAGGAAGCTCATGCAGTTGCCCAGGCTCGT 4226525 31 100.0 36 ............................... GTCCTGGGACGCCTCGCCGGCAGCGTCGCAGGCATG 4226592 31 100.0 34 ............................... ACCTTCCCCGCGATGCGGCCGATGCGCTGCAGGC 4226657 31 100.0 34 ............................... TATTTCGCACGAGATGCGTGCAGCACCTGCGATC 4226722 31 100.0 35 ............................... AGCTGCGTTGGTCCGACCACTCTGGTGCGAGGTTA 4226788 31 100.0 35 ............................... TCGGCGACGTGGAGCACAAGACCAGCAAGAGTGGC 4226854 31 100.0 33 ............................... CCATGCGGCGAGGTTTCCACGCTGACACTCCCG 4226918 31 100.0 34 ............................... AGCACTGTGTTAGGTGGTATTGGTGGCTCGGGAT 4226983 31 100.0 34 ............................... TTAGCCACGATGGCATAAATGTCACTTGGCAGAT 4227048 31 100.0 35 ............................... TGAGACTTGTCTCTGAGGCACCAGATATGCAGGTG 4227114 31 100.0 34 ............................... ACATCGTTCGACAGGGTGATGGCGTTCGGTTGCA 4227179 31 100.0 35 ............................... CGCGCCAAGGGGGCACCTGCCCGCTCCAACTCCTC 4227245 31 100.0 35 ............................... TTCGTGCAGCTGGTTGGGTGATCTTCGCCATTGCC 4227311 31 100.0 35 ............................... TCACGAATAGGCGCGGTCCAGGGCCACGCAGTGGC 4227377 31 100.0 34 ............................... GCCAACGCGAAACCTCTGAAACGTTGCATTGCTG 4227442 31 100.0 34 ............................... TCAGCGCGTGTGGAGCGTTATCCGTAGGGGCGCT 4227507 31 100.0 36 ............................... CCGACGTTGGCCAGCCTCTACGAAGGCGCTGTAGCC 4227574 31 100.0 34 ............................... AGGTGTTGCGCGCTGTCAAAGCGTCTGCACGCGT 4227639 31 100.0 36 ............................... ACCAAAGATCGCGCCGACCCCAATAAGCCGGTGGCC 4227706 31 100.0 35 ............................... AAGATTGGACCCTCGCTGGTGATGATCGGCGCGGC 4227772 31 100.0 35 ............................... ATTTCATGAGCGCGCATGCGCAGATCAGCAAGCAA 4227838 31 100.0 36 ............................... GTGATGGTGCTGGAACAGGCGTTGTCGGCTGTGCTG 4227905 31 100.0 35 ............................... TAGATCGCCCACAAAGGACCGTGGATATGTGGACA 4227971 31 100.0 34 ............................... TTTCGCGGCGTGATCACCTGGTCGGCGATTAACG 4228036 31 100.0 33 ............................... TATACGGAGCGTGGAGGGTGATCTTAAGGTTGC 4228100 31 100.0 34 ............................... ACCATCTGCGTTTCTGCATCGCTGAAAAGGCCGC 4228165 31 100.0 34 ............................... ATCGTGCGGCATTGCCCAACGCCTGATGCGTTGC 4228230 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 4228296 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 4228362 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 4228427 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 4228492 31 100.0 35 ............................... ACGTTCAAGCCGCTCGCCCTGGGCGACCGGTGGGA 4228558 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 4228624 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 4228688 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 4228755 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 4228820 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 4228885 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 4228952 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 4229017 31 100.0 34 ............................... GAGTGCCCGGGGTCGGTGTCGGCGCAGGCTGGCC 4229082 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 88 31 99.9 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATAACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGC # Right flank : CATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACCGAGACCAGATCATGGCCATGAATCGTGTGCAGTTCCAAGCCGGGCTGTCGTTGCCGGCGTTCCTCAAGTGGTGCCCAGCTTGCTGGCCGCCGCAGCCGCCAGCAAGCCGTGGTCCGAGCGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //