Array 1 19150-18848 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUXE01000012.1 Porphyromonas circumdentaria strain ATCC 51356, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 19149 33 100.0 33 ................................. TTCGGTCTCTTGAATATGCGCTAATCGCTCTGA 19083 33 100.0 34 ................................. TCACTCGTACAAGTGTAATCCGCAACAACAAGAT 19016 33 100.0 35 ................................. CAGTGCTTTCGCTCAAAGACTTTCTTCCCGTTACA 18948 33 100.0 35 ................................. CTGTACTTTCGTATTAGCTCGTCTGTTAGGTCTAT 18880 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 5 33 100.0 34 GTCGCAACCCGCTCGGGTTGCGTGAATTGAAAC # Left flank : TATATTCCTTATACAATAGCGACCTATGTATATCCTTATCACATACGATGTGGCAACCTCCAGTTCTTTCGGAGAGAAAAGACTTCGGCAAGTAGCCCGAATCTGCCAAAACTACGGACAACGAGTACAGAACTCCGTATTTGAGTGCCTCGTAGATCCTGCACAGTTTGTGTTACTCAAGCATCAACTTCTCTCTACTATGGACGATAGTGTAGATAGCTTAAGGATTTACCGTCTGGGAAAAAACTATCAAGCCCACATAGAAAGTTATGGCAAACCAACATCATTTGAAATTGAGGGGGAATTAATCATTTAAATCCCTCATATAACTTCTGCGAACCCAAAGTACACAGAAAAAAGCCGCGGTGTCGCAGTCATTATAAATCAACACATTATAGTTGATATGACAAGAAAAACAAGCATACGTTCTTTGACATATTTAATGATTCGCATTTTAACCTCTCTAACTCGGCTAAATTGTGTACATTTGTGGGTGTACT # Right flank : TGGAAAGAAACATTTGAGAGGAGCAGTTAGCCTATACAACCGTCCTTGTGAGTCTTGACCAGAGCCGATTTAGAAGAGCTAAAACACTTTAACTCTCCTAGGTTTGGCTTTTATTTTTTTGATAGAATATAAAAAGAAAAAGGTGCTATCAGTGAGCTTCCAACCAATTAGCTCCCGTGCCGATTTCTACCTCCAACGGCACCCGTAATCCCTCTATCGCATGTGCCATTTCGTAACGCACCAAATCGGTAAGAGCTTCTATTTCGGAGCGATGCGCGTCGAAGTTCAATTCATCGTGCACTTGGAGTATCATACGACTTTTCATTTGCTTCTCTCTGAGGGCTCGATCGATACGTACCATCGCTATTTTTATCAAGTCGGCAGCTGTCCCCTGTATCGGTGCATTAACCGCATTGCGCTCTGCAAATGAGCGTACCGTAGCGGTGCGACTATTGATATCGGGCAAGTAACGGCGACGCCCCATTATCGTCTCGGCATAT # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAACCCGCTCGGGTTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.70,-5.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 56785-58507 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUXE01000009.1 Porphyromonas circumdentaria strain ATCC 51356, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 56785 30 100.0 34 .............................. TTCTTGTAGTATTTAGCAAGATTTTCGACAATGA 56849 30 100.0 35 .............................. GGGTTGGGACTTGTGTTAAGAGAAGTAAAAGATAC 56914 30 100.0 35 .............................. CCTTTTGACAATAACTTTACAGAGACTTATATAAG 56979 30 100.0 36 .............................. TCTCTAAGTGTGTTACATACACATCTTTAGGGTACC 57045 30 100.0 35 .............................. CGCGAAGCGCGGAGCGAAAAAAATGTTCTGCCTCT 57110 30 100.0 36 .............................. TAAACTTCAATCATGATTATTTCATGGGGTGTTTTA 57176 30 100.0 37 .............................. GATATAAGCATGACTATGTATGTTCTTTCTTTCTTAA 57243 30 100.0 35 .............................. TGTTAATCCTTTCTGCGTGTTTCTTAGCTATATCA 57308 30 100.0 34 .............................. CTATTGAGGCTATCTCTAAGAAGCTTGTCGATGA 57372 30 100.0 36 .............................. TTGCAGACCCCCTCTACTGCTATTTATGACGGCATG 57438 30 100.0 34 .............................. CTCTTGACCTTTCAACCGCTTCAGCTATCTATAT 57502 30 100.0 34 .............................. TAAGCATAGATACAGACTTCTGTATCGCAAGAGT 57566 30 100.0 35 .............................. TGATTTAGTTGTAATGGTAGGGAAGTTTGTAGGGC 57631 30 100.0 35 .............................. AAGCGATTGTGTAATTCGAGTACTAAATTCTTGTA 57696 30 100.0 37 .............................. CGAGTTTGATAAAAGACTTGGAGGGCTCGGGGCGATA 57763 30 100.0 34 .............................. ATTATGTAGCCATGCTCTTTTACTTCGAGGTTAA 57827 30 100.0 34 .............................. CTAACCCTCGCTCGTTACAGCGAGTTTACAATAA 57891 30 100.0 34 .............................. ATATGCCTTAAAAGGAAGCGCGGCTATACGCTTG 57955 30 100.0 35 .............................. AAAATCCTCTGACATAAAATTACCGCAACATAAGT 58020 30 100.0 36 .............................. TCCTTAATAAACATGAGATAAGAAGGTTTGACATAC 58086 30 100.0 34 .............................. TCAAGGCTCGCCTGCTGGTAAGATTGCGAACAAT 58150 30 100.0 35 .............................. TTTTGCAATGTGTCAAAATGGCAATAGCGCGCTTC 58215 30 100.0 36 .............................. TGTTCCCTCAAACCCCGTAGGAGCAGAAGAGGTAGA 58281 30 100.0 37 .............................. GACTTTGGGCTGCTGGGTATCCCTTTATTTTTAGGTG 58348 30 100.0 36 .............................. CCTAAAAGCGCGAGATGGACGGATGTTACCAGGATT 58414 30 100.0 34 .............................. GGATTGAAGCGGAAGAGCTCTTCCCGCCCCTCTG 58478 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 27 30 100.0 35 GTACTAATCGCACTATAATAGAATTGAAAC # Left flank : AGCGTGCTCCTTTAAGCCCTTGTATTCCTCCCGAAGAAGTTTATTTTTTGCCGACATTTCAACGGATTACCTATAAAAACATGTCAGTCTTCCACTTCTCTGTAACGGAAAGAAGACGCATCCTAAACTATCTTCTCACCTATTACTCTCTGCATTTTGCCCATGTAGGACAGCTTTCCTCTCCCGAGGTTTTATCTCTCTTATAGTAGAGATGAAACAACACTCTCCTCCGCTAAAAAATTGCTTCTCGGGCTAAAACATCAATTTCTCGAGGCACTTTTTTATACAAGAACTGTATGTAAGTTTGCCAGAAATAATAGAGATTTCTGACATTGTTGGGAAGTCCAATGCTAATTTGCTATTCTCAAATAGGATTTAAAGTTGTCGAATCTCAAGCATTTTCATAGAATTAGATATCGACGATTTTTCACTAAGAGAAACAACACTTTTTTCTTTTAAAGCCCTTGTATTTTCGTCTTTTTTTCTTGTAACTTTGCGGG # Right flank : CAGTGAGGGAGAATAGATTATAATTCCCCTTTGAGACCAGTAGCTATTAGCAATAGCCCTAAAAAAGGTGTAACTGCAAGGCAAATCCTAGCTCTAACAAAAGATAAAAGGGCGTTTTTGTGTTGAGTATCGCACTGTTGTTGCATAGAGGTTGCACACCCCAAGCCCCGCTTAAGCCCCCAAAAAAGCGCATACTACGATGGGGAAGAAAATAGTAATCGAAAAAAAACCTACTTCCTAACTCTGAAACAAAATCCATTTGCACTTCCCCCCAAGGGCTCAAAAAATTCCAATAGATAGAGAAACCACAAGCCAACCTCTTTAGCATCAAATAGGATCTTACAGTTTCAAGTCCGAAAAACAACGAGGGCTCCCTAACATTAGTTTTATGGGTAAAAAATCCTGCTGTAGCTCCCAACGAACCCAAAGAAGCAGAATCTCTATCGTACAAATAAGAGAAACTCAGAGATGAACGAACAGTACTGACACACCCACTCTGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACTAATCGCACTATAATAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA //