Array 1 94690-95328 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIPA01000007.1 Salmonella enterica subsp. enterica serovar Enteritidis strain CFSAN024750 SAL4652_S12_L001_R1_001_(paired)_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 94690 29 96.6 32 ...........................T. AGGATTTCGCCGCGCTGTTGGCCTCCAGATTC 94751 29 96.6 32 ...........................T. CCGTGCCTGTCCAGGACAAATTGCCGATTATT 94812 29 96.6 32 ...........................T. CTGCCGGTCTGTGCTGTTGTCGTCAATAATCA 94873 29 100.0 32 ............................. GCATGTGACAGTCTGATTTTTATAGCGCATGA 94934 29 96.6 32 ............................C AATTTAGGGGCCGGAACTCCGGGAAAGGCAGC 94995 29 100.0 33 ............................. CAAACACCAAGCTCTTCCGCCGCGCGTTCCTGA 95057 29 100.0 32 ............................. TTGCTCTCATTAAAGGGGTTTCCATGTTTGAT 95118 29 100.0 32 ............................. CGGTCGCAGCCTGGCCTGTTGCCGTAGAATCG 95179 29 96.6 32 .........T................... AGTTACTGATGCAGACTGCGGATCTTAATCGG 95240 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 95301 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 96.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAAGCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGGAGGCTTTTCTACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTAGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTG # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACTG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 111481-111998 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIPA01000007.1 Salmonella enterica subsp. enterica serovar Enteritidis strain CFSAN024750 SAL4652_S12_L001_R1_001_(paired)_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 111481 29 100.0 32 ............................. ACGTTGGCTGAAAACGGTTTTTCGGTCCGCCT 111542 29 100.0 32 ............................. AATATATGGCGCTCACGCGCATGAGCATTCTC 111603 29 100.0 32 ............................. CAGGGCAAATTCATCCGCCGCTGACCACTGGT 111664 29 100.0 32 ............................. GACGCTTACATCTCACCGAGAGATTTTGAGGC 111725 29 100.0 32 ............................. GGAACTGGTTTAGCTATCGCTGCCGGGGCTAT 111786 29 100.0 32 ............................. GATTGCTCAGATTGGGAATTTGACCAGCGGCC 111847 29 100.0 32 ............................. TCACGAGGGCCCCCTTATTGGGTCGGGCAGGT 111908 29 100.0 32 ............................. GTTGGGTTGCATAGATGACACGCTTATAAATA 111969 29 96.6 0 ............T................ | A [111996] ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATGATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGTACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 664-453 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIPA01000014.1 Salmonella enterica subsp. enterica serovar Enteritidis strain CFSAN024750 SAL4652_S12_L001_R1_001_(paired)_contig_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 663 29 100.0 32 ............................. TTGCCGTAACCCTGCCGACCACCAATATTCAC 602 29 100.0 32 ............................. CAGGACAATCCAGTAAGAAATTCAATGACCAG 541 29 100.0 32 ............................. ATAACGCGCACCGGCTTCCACCTGGCGGATAT 480 28 79.3 0 .................A..-..G..GAC | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.8 32 GGTTAACCCCTGTGGGCGGGGATAGGTCG # Left flank : AGTGGAAGATTTGAATGTGCGGGGAATGATGGCAGCGCCAAAACCGAAGCCAGACCCGGATAACCCCGGCGCGTTCCTGCCGAACGGCGCCAGCCGCAAGCGCGGGCTGAACCGTTCGCTGGCCAGTGCCGGCCTGGGCGAGTTTTTCCGGCAACTTGAGTACAAATGTGCATGGCGCGGCGTCGCGCTGCTGAAAGTTGGCCGCTGGGAGCCGTCCAGCAAGCGCCGCAGCAGCTGTGGCGAGATTAATGAATATTTGACACTGGCAGACCGCCGGTGGCAGTGCCCGGTGTGCGGCGCAGAACATCACCGTGACATTAATGCCGCGGTGAATATTGCTGCCAGGGCAGTGTAACGAATAAAAATAGGGCGCGGCCCGCCCGAATTAACGCCTCCGGACATGGCCAGTGTGCTGTGGTTGAAAGAGGAAATTTCCGCAAAAATCTGGTAGAAATTCAGGCGTTATTTTTCGCTATAGATTTCAGCCAGATGCCGCCAGA # Right flank : CTAAATCATCGTTAAGCTGCGGCACGTAGGGCCGCGGAAACTTAAATTTTAACTTGTAATAAATCCATTGTTTAATGTATTTAATTTAACTGCATGATTTAATTGATTTTAATTTACTGCTTCATTGTTTGAGACGCTTGGTGATTTTTTCCGTAACTATGAAGTTTTTTATGTGTTTTTACTAATTGATTCCATGTTGATTAACCACTCCCATTATCGTAACAATTTATACTAATGAAATTGTTGGTATTATATTCCCCTCCATATTATCACTTAAAGCCACAGCGAATAATTTTCGTAACAAGTTCACAAATGATACACACCCCTTTTTATCGTAACAACATACCGTAAAGCCAATCTTCGTAACATAGAAAACACCTATCGTAACATATTACCACAAGATATCGACACAACATATATAATTATACGCGCGTATAATTATATATGTTGTGT # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTAACCCCTGTGGGCGGGGATAGGTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.90,-7.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //