Array 1 5185-3482 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLGJ01000133.1 Acinetobacter baumannii strain ABBL079 contig-2000047, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5184 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 5124 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 5064 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 5004 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 4944 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 4884 28 100.0 32 ............................ AATGTACTTTAATTTCCACTCGACACCAGTTC 4824 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 4764 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 4704 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 4644 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 4584 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 4524 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 4464 28 100.0 32 ............................ ATAATTCCGCCATCCTCGGCTGAGATATGGGT 4404 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 4344 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 4284 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 4224 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 4164 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 4104 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 4044 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 3984 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 3924 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 3864 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 3804 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 3744 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 3684 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 3629 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 3569 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 3508 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 29 28 98.0 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : | # Right flank : GAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGCA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 27434-22903 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLGJ01000098.1 Acinetobacter baumannii strain ABBL079 contig-2000008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 27433 29 89.7 31 ....G.......CC............... TATTGTGAGCACCTTGATTGCTGTGCGCTGC 27373 29 89.7 31 ....G.......CC............... ACAGCGGGAAACTTGAAAGTCATTGCGAAAT 27313 29 89.7 31 ....G.......CC............... GATTGCCCCCTGAGGAAACTGTATAAAGTCC 27253 29 86.2 31 ....G.......CC..............A AACACCAACTAAGCCATTCCCTATTCAAAAA 27193 29 86.2 31 ....G.......CC..............A TGAACTTTTAATGGATGCATGCGCCGCCCAC 27133 29 86.2 31 ....G.......CC..............A CGAACAACGATAATTTGGAATACACGCTCAT 27073 29 89.7 31 ....G.......CC............... CAGGAGAAAGATCGTTCAAAAGCTCAAAACC 27013 29 89.7 31 ....G.......CC............... GAAAGTTTTGATATCCACTCTGCTGTTTCAA 26953 29 86.2 31 ....G.......CC..............A GATGGTAAGAAAATTATTGAGTCTGGAGACA 26893 29 86.2 31 ....G.......CC..............C GACAGTCCAGTTGATCAGATCTTGATTAGAC 26833 29 86.2 31 ....G.......CC..............A ATGACATGGTTCAACAATTAAATTCATCTCA 26773 29 86.2 31 ....G.......CC..............G TTCTTTTCTGCAATATGTGCCATTAGGTATT 26713 29 86.2 31 ....G.......CC..............A TTTTAGATGAAACAAAAGATAGCAGGATTAT 26653 29 86.2 31 ....G.......CC..............A GACCAAGCGGATTGACCGTATTGATAAATAA 26593 29 89.7 31 ....G.......CC............... TCTGCAATACAAATCACTGGATCAGCCAGGT 26533 29 89.7 31 ....G.......CC............... GAGTCTTTGATTTCCCAAATATTACTTGAAA 26473 29 86.2 33 ....G.......CC..............C CTGAAAAATTTCACTGTGTCCATTTCGTTATTA 26411 29 89.7 31 ....G.......CC............... ATGTCTTTAAATTCTGAAAAAACACTTGTTC 26351 29 86.2 31 ....G.......CC..............G AAAAAATTGAAAACTTTTTAGAAGTAAATGA 26291 29 86.2 31 ....G.......CC..............G CCACACATGCCTAAAAACGCAAGTGCGCTCG 26231 29 86.2 31 ....G.......CC..............A TTATCAGATAAGCCTTTTATGAATGATCGTT 26171 29 86.2 31 ....G.......CC..............A TTAGCTATTAGCTTTTTGGCAACAACAACAG 26111 29 86.2 31 ....G.......CC..............A GTTCATGAAAACAGCTTTAAAAAGAAAGCAC 26051 29 89.7 31 ....G.......CC............... CCGAAGGTAGTGAAGCTGTGTGTGAATTTAC 25991 29 89.7 31 ....G.......CC............... TGCAAGCTCGTCTAGCTAAAGTAGACCCTAA 25931 29 89.7 31 ....G.......CC............... GGTACGACAACTACGAAAAGCTGAGCAAAGT 25871 29 89.7 31 ....G.......CC............... CAACTTAAATGGATGCTCCCCGCGGTGAATT 25811 29 89.7 31 ....G.......CC............... TGATTGCTAGACGGATTTTTAGGCAGATCAT 25751 29 86.2 31 ....G.......CC..............G AGTTTAATGCGCTATATGGCGACGAGGATTT 25691 29 86.2 31 ....G.......CC..............C ATGCAATCGCGTTGATTACCGCAGCTTCGAA 25631 29 86.2 31 ....G.......CC..............A TGAGCCGCAACCATACGGTCTATGACTTCCA 25571 29 86.2 31 ....G.......CC..............A TAGCGCCCTGCTCTATGTTGTCACTTCCGAA 25511 29 89.7 31 ....G.......CC............... CCAAGTGAATCGGCTCCTAATGCAAATGACC 25451 29 89.7 31 ....G.......CC............... GAAAACCAATATGCTGCCTAATTGCCATAAG 25391 29 86.2 31 ....A.......CC..............G ATCTGCGTCCATTTGTACTTGCTGCGGGTGC 25331 29 96.6 31 ............................A TATACAGCACCGCTTAGTGCGACGCGGTCAT 25271 29 96.6 31 ............................G CCCACAGGTTGAGCATCAACGGCCATCGAGA 25211 29 96.6 31 ............................A TCATAGAGCTCACTTTGTCGTTGAGCCTGCA 25151 29 96.6 31 ............................A GAAGGCCCGTAATTTAACTGTAAGCCGTGGT 25091 29 100.0 31 ............................. CTTCCTGAGTTTTAATCCCATTTGCCTTACA 25031 29 93.1 31 ......T.....................C ATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 24971 29 100.0 31 ............................. TCAGGGAATTATCGTGAAACTTTCATTGACT 24911 29 100.0 31 ............................. GCACCAGCTGCTGGCTGGTTGAAATCTGCAA 24851 29 96.6 31 ............................A GAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 24791 29 100.0 31 ............................. GTTTCAAAAGCTACACCATCAAAACCATTGC 24731 29 100.0 31 ............................. ATTTAAGTAATAAGTTTAATAACGACCTAGT 24671 29 96.6 31 ............................A ACACGTTCTCTATATCGCTGTTTGCGGTCAT 24611 29 100.0 31 ............................. TCAGTTGGATATGCCTTTGATACCAAGAAAC 24551 29 96.6 31 ............................G CCTGCAGACACGGATTTACGCAGCTGATCGA 24491 29 96.6 31 .........................C... AACCAAACTATGTCATCGATCGGAGATTTCA 24431 29 100.0 31 ............................. TAAAATAAATGCCTGTGGTTTTTTCTTAACT 24371 29 96.6 31 ............................A GTTTCCGAAGTTGAATTACACTCGCCAAGTT 24311 29 100.0 31 ............................. AACACAGTGATTTGATTACCTTGAGCAACCC 24251 29 96.6 31 ............................A TCTTGATGCCGAGGTCTTTAGCTTCTTGAGA 24191 29 100.0 31 ............................. CATCCACCTTTGATGAAACGGATCCACGCAA 24131 29 100.0 31 ............................. CTTGTGTGACGGCCTCCACTCCAGATCCCGC 24071 29 100.0 31 ............................. TAAGCTTCAAAAATAGCCATTGATTATAAAA 24011 29 100.0 31 ............................. GACAACTTTCCACGGCAATCAGGGCTTTCCA 23951 29 100.0 31 ............................. AAAGATGCACGTGGCCTAATGCAAGTTATTC 23891 29 100.0 31 ............................. TTAAAATTAGGTGCTGAGTTACCACGGCTCA 23831 29 100.0 31 ............................. AAACCAAGAACTTGAAGATTTTGATGCTTAT 23771 29 100.0 31 ............................. AAAAATAGTGTGTTAATTATTTATGATGAAA 23711 29 96.6 31 ............................C GTATACATGCACATCAATACGATATCCCGAT 23651 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 23591 29 100.0 31 ............................. GCAGCTACTCGACATGTTGGTAGGGCAGATG 23531 29 96.6 31 ............................C AGTCGGCTGGTGCTAATTGAATAAAATCGTT 23471 29 96.6 31 ............................A GATTGAGGCGATTTTTATCGCGGACATTGCC 23411 29 96.6 31 ............................C AGTCCCCGCTTTGAAGCATTCCCATCAGTAC 23351 29 100.0 31 ............................. CACAGCTATCGTCTGGCTGCCGTCGCGTAGA 23291 29 96.6 31 A............................ TATTATTAAACGGGAAAAGTATATTCTTGCT 23231 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 23171 29 96.6 31 ............................A TCATCAATAAGTTGGCCTTGATTTAAATAGT 23111 29 96.6 31 ............................A GATACAAACGAGTTCGCATCTCGACCAGAAG 23051 29 96.6 31 ............................A TTATCCAGATAAAACCATATCTACAAAGTGG 22991 29 100.0 31 ............................. CAACCTGAACACAGACATACATGTTCTATTG 22931 29 86.2 0 ...GC...................AT... | ========== ====== ====== ====== ============================= ================================= ================== 76 29 93.2 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTACA # Questionable array : NO Score: 5.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.31, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //