Array 1 665972-667589 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR822008.1 Streptococcus thermophilus isolate STH_CIRM_18 chromosome STHERMO Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 665972 36 100.0 31 .................................... ACGTCTGTCTAACTGGAAAGTACCTGCTAAT 666039 36 100.0 30 .................................... CTGTTCTCTAATCGAGAGGCGCGTGATTGA 666105 36 100.0 30 .................................... AAACCTCACTAGTCACTTAGTGCGGTTAGG 666171 36 100.0 30 .................................... TATTAAGTTTAGTCCCAGGTTTCTTATCGT 666237 36 100.0 30 .................................... AAACCAATAAACATACCGATTGCTGCCAAT 666303 36 100.0 30 .................................... GCAAACGTTAGCCCAGGAAAGCATCATGAA 666369 36 100.0 30 .................................... AAGAGCAAAAAATAACTCTAGCTCTCGTCC 666435 36 100.0 30 .................................... AAGAAACCTCTAAGTTGAGCATTTAATGAT 666501 36 100.0 29 .................................... ATATAGTTTTAAACTTTCTTGACCTTCTG 666566 36 100.0 29 .................................... ACGTTGATGAATATTGTTGATAAACTTTA 666631 36 100.0 30 .................................... CAAGAAGTGAACAAAGTACACGCTGGAAGT 666697 36 100.0 30 .................................... GACAGCAAGATACACGTAGTTGATGAATTG 666763 36 100.0 30 .................................... TAAGAAATCAACGCAGATTTTTAGCCAACA 666829 36 100.0 30 .................................... TAACCCAATAATTACAGTGAAGCACAATAG 666895 36 100.0 29 .................................... CAGGCGTAAGGTATGCTAATTATAACGAT 666960 36 100.0 30 .................................... GCTATCGAACTAATAGCTTAGAGGAACTCA 667026 36 100.0 30 .................................... GTGGAATATTAAGCCCGAATTGTTGCAGCA 667092 36 100.0 30 .................................... TATTGCAATATTTGCGTTTGGGAAACCTTC 667158 36 100.0 30 .................................... CGTCTGTCTAACTGGAAAGTACCGGCTAAT 667224 36 100.0 30 .................................... AAAGAGATGTACCCATCCATTCTAACAGGT 667290 36 100.0 30 .................................... GGGGAGTTGATTTCTTACATCAAAACAATG 667356 36 100.0 30 .................................... CATCAAAGTTGAAAAGGACTACAACAGCCC 667422 36 100.0 30 .................................... CTTAAATTTAGAGCGTGGGATCTTGAATAT 667488 36 100.0 30 .................................... ATATACCGATGGCACATCTGAAACTGGCTG 667554 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 25 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATGGATTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTTGGTCTGTGGGTCATTGTAAATAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGATAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1393845-1392687 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR822008.1 Streptococcus thermophilus isolate STH_CIRM_18 chromosome STHERMO Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1393844 36 100.0 30 .................................... TTTATAGACTCTGACAATACGATATAGAAT 1393778 36 100.0 30 .................................... CTTAAATGCCAATGGTATTTTAAAAATCAA 1393712 36 100.0 30 .................................... TAAATAAAGAAGCGTCTGAAATCGATTTTA 1393646 36 100.0 30 .................................... CTTAATTCCCTCTCTGCTGCTCGGTTTACC 1393580 36 100.0 30 .................................... ATCGTTCATTGCTAGTCGTTTGGCAAATCT 1393514 36 100.0 30 .................................... TGATGAAGTTAATATCACGGACACAGGTAC 1393448 36 100.0 30 .................................... TATCCCAGAGAATGGAAGAACAATTATAGA 1393382 36 100.0 30 .................................... GCTATGATGACTTGCTCAGTATGTTTAGTT 1393316 36 100.0 30 .................................... CGGGCTTAACATTCCACACAATATCCAAGA 1393250 36 100.0 30 .................................... AATCTGACACAGCTAACCACATGAGCGACA 1393184 36 100.0 30 .................................... TTATTAGTTTTGATATGCCACAAAATAATT 1393118 36 100.0 30 .................................... CATCACAGATACCGGAAACGGTGGTTATTA 1393052 36 100.0 30 .................................... CATAGGTCATAATAACTTCATCGGTTGGAA 1392986 36 100.0 30 .................................... ATAGTATTAATTTCATTGAAAAATAATTGT 1392920 36 100.0 30 .................................... ATTCGCCAAAATCGCACCGTTAACACTCAA 1392854 36 100.0 30 .................................... TTATGAAAACAATATCACAGACACAGGAAA 1392788 36 100.0 30 .................................... ATCAAGGTTGTTGAAGTCGAATGCTATTGT 1392722 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAATCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //