Array 1 28820-29427 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAUVR010000012.1 Listeria ivanovii subsp. ivanovii strain ICDC-Liv200 Scaffold11_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 28820 29 100.0 36 ............................. TCAATTCCCTTGTTCGCTATAAACGGATGGAATAAA 28885 29 100.0 34 ............................. GGGGGAACAGCGACCGGTTTCGGCTCGGATATTA 28948 29 100.0 36 ............................. TAGCTTTGCATTTTTTCAGTGATAGAAGTCGCATAT 29013 29 100.0 35 ............................. CCACATATAAAATTACGCCTCCTAATTTTAGTAAT 29077 29 100.0 35 ............................. AACGATATTGGTACAAAAGTAAATTTATCGTTTTT 29141 29 100.0 36 ............................. TTTTAAAGTAAGCTTCTGCTTCTTTAAATGAGGTAT 29206 29 100.0 35 ............................. AGAATTCTTCTGTCGGATACATTTGAAGCGTTCCG 29270 29 100.0 34 ............................. TTCTTCTGGCGTCTTCCAGTTTGTCATCTGCTTT 29333 29 100.0 37 ............................. GTCAAATTGCTCATTGAAATAAAGCGGGTTTGTGATT 29399 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ===================================== ================== 10 29 99.7 35 GTTTTAATTACTTATTATGAAATGTAAAT # Left flank : GTTTAAAATTTGGTGGTAGATATATGTATGTTATCCTAATTTACGATATTTCGGTGGAAAATGGAGGTGCCAAAGTTTGGCGCAATGTATTTAAAATTTGCAAAAGATATTTAACACATGTTCAAAAATCAGTATTTGAAGGGGAAATAACTCCAGCGCTTTTAGTGAAATTACGAATGGAATTAGATAATTATATTCGTGCAGATGTAGATTCTGTGATTTTGTTTTCTAGTAGACAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTAGCAGATGAAAAAACATCGAATTTCTTTTAGGTGGCTTGTTTCTGTCGACCTCTAGTAGTGTGAAAAACACTAGGGATCGACAGAAATGCGGAATTCGCTGGAGGAGAAAGGGTTTCAGAGATTTCGATTCTTAAAAAAGAAAAAGTGAAATAAGTTTTCCACATTTTAGCGTAGGTCGACAAAAATAGGCCCTTGAGGTAAGATGGGAGTAGGGTAAAAAGTTGACGG # Right flank : TATTTTTTGTGTCGAGCCAATTAAATTGTGTATTTGAATTTTAGCTTCTTAACATTAATAGATAAAATATTCATTGAATTTCTAAATCTCTTTGTCAAAGTAAATGTGGGAAATAAGATGGTATAGGCTAGAAGAAAACAAAGCAAAAGTTTGCGAACTAGAAATCCAGTAAGTACCTTGCAAAAGAAGTAAAGCGCATGCGGCGAAAAGACATCACCGAACTAAATGGTTATATTTACAGGTTAAGAGGTAGCAATACAATAGTAAAAATTGGCCCGAAAAATCAAAGGAGCAATCACAGACTCAGAGGACTAACGAATATAGCGATACCTTTAGAGCAGATAAAAAGCTTTAAGGGTATTTTTATCTCCAAAAATCTCTCTTTTACTGGCCCATCCCCATATTCCTAATTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAGCAACATAACTCTAAACTTATAATGAACGTAGTAAATGAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.21%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 37024-37245 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAUVR010000001.1 Listeria ivanovii subsp. ivanovii strain ICDC-Liv200 Scaffold1_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 37024 29 100.0 35 ............................. CTGTATAAATTTCATCCGATGAATTTCGACATCGT 37088 29 100.0 36 ............................. AAATCGTTGTGAGATAATTATTTCAGATTGAGAATT 37153 29 100.0 35 ............................. ACATACAAAGCGGTTTGGAAATTTTCTGAACCAAC 37217 29 82.8 0 .......C....C..GA.....A...... | ========== ====== ====== ====== ============================= ==================================== ================== 4 29 95.7 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : TCAGCTGACGTTCTATTAGAAAAAGGTGCTGTAGAAGTAATCGCCTGTGCAACTCATTCAGTTATGGCTGGAGATGCAACAGAACGATTACAAAACTCACCAATCAAAGAAATAATCATATCCGACTCCATCGACCTTCCAGAAGATAAACAATTCGAAAAGCTAACAACTATCTCCATTGGTCGAATCTTAGGTCGTGCAATCGAAGGGGTTCAAGAAAATCGCTCGTTGCATCCACTTTTTTAAGGAGATTAATAGTAGGAAATTGGGAACAGGGCTTCTATTGGGGCTCTGTTTTTTTATGAACTATTATCTGTCGACCATCAGTAGTGCAGAAAACAGGGGAGGTCGACAGAAAACTGGATTGACTGTGAGAGAATGAGTTTGAAGTTTTTAAAGTTAGTTATTAGTAGTTAGACATTCAAATTTCACCCGATTTGAAGAAGGTCGACAATAATAGGCGTTTGAGGTAAGATGGGAGTAAGGAAAAAATGAAGCGG # Right flank : TTTGTCTAACCTTTAAACATATCTACAATATTAGCCAACTCAAAAACAACAAGAATACATAAAAAGGGAGGAAACACCAATGAAAAAAGCGCTTTACCCCATCCTATTGCTATTGATCCTACTAGCCAGTTGCTCCACGCAAGATGAAACTCTATCCCCGAATACCAAAATTCATAAAAATAGTGTCATTAGAGCTGATTATAAGATACCACAAAACCTGGCAGAACTAGAATCAGACAGCGAAGATATTGTCCAAGTAAAATTAATACGAAATAAAGAAATTGGTAAAGGAAACAACAGCTCAATAACGGAAGTAGAAATAATCAAAAACTACAAAGGCAGTTTTGAGCCCGGTGATAAAGTGGATATTTCAGAACCGTGGCTTTTAACTTCAGGAGAATACCAAGCGGTGGAAAATTACATTGCACTCGAAAAAGGTCAAGAATATATCCTGTTTTTAAGTGGTGGACATGGCACGGATAAAGTAAGCTCAATCACGA # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 55350-56150 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAUVR010000001.1 Listeria ivanovii subsp. ivanovii strain ICDC-Liv200 Scaffold1_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 55350 29 100.0 37 ............................. AACGACGAAATGAACAAGTTATATAAAAAACATCCAG 55416 29 100.0 36 ............................. TCAATTCCCTTGTTCGCTATAAACGGATGGAATAAA 55481 29 100.0 34 ............................. GGGGGAACAGCGACCGGTTTCGGCTCGGATATTA 55544 29 100.0 36 ............................. TAGCTTTGCATTTTTTCAGTGATAGAAGTCGCATAT 55609 29 100.0 35 ............................. CCACATATAAAATTACGCCTCCTAATTTTAGTAAT 55673 29 100.0 35 ............................. AACGATATTGGTACAAAAGTAAATTTATCGTTTTT 55737 29 100.0 36 ............................. TTTTAAAGTAAGCTTCTGCTTCTTTAAATGAGGTAT 55802 29 100.0 35 ............................. AGAATTCTTCTGTCGGATACATTTGAAGCGTTCCG 55866 29 100.0 34 ............................. TTCTTCTGGCGTCTTCCAGTTTGTCATCTGCTTT 55929 29 100.0 35 ............................. AGAATTCTTCTGTCGGATACATTTGAAGCGTTCCG 55993 29 100.0 34 ............................. TTCTTCTGGCGTCTTCCAGTTTGTCATCTGCTTT 56056 29 100.0 37 ............................. GTCAAATTGCTCATTGAAATAAAGCGGGTTTGTGATT 56122 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ===================================== ================== 13 29 99.7 35 GTTTTAATTACTTATTATGAAATGTAAAT # Left flank : GTTTAAAATTTGGTGGTAGATATATGTATGTTATCCTAATTTACGATATTTCGGTGGAAAATGGAGGTGCCAAAGTTTGGCGCAATGTATTTAAAATTTGCAAAAGATATTTAACACATGTTCAAAAATCAGTATTTGAAGGGGAAATAACTCCAGCGCTTTTAGTGAAATTACGAATGGAATTAGATAATTATATTCGTGCAGATGTAGATTCTGTGATTTTGTTTTCTAGTAGACAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTAGCAGATGAAAAAACATCGAATTTCTTTTAGGTGGCTTGTTTCTGTCGACCTCTAGTAGTGTGAAAAACACTAGGGATCGACAGAAATGCGGAATTCGCTGGAGGAGAAAGGGTTTCAGAGATTTCGATTCTTAAAAAAGAAAAAGTGAAATAAGTTTTCCACATTTTAGCGTAGGTCGACAAAAATAGGCCCTTGAGGTAAGATGGGAGTAGGGTAAAAAGTTGACGG # Right flank : TATTTTTTGTGTCGAGCCAATTAAATTGTGTATTTGAATTTTAGCTTCTTAACATTAATAGATAAAATATTCATTGAATTTCTAAATCTCTTTGTCAAAGTAAATGTGGGAAATAAGATGGTATAGGCTAGAAGAAAACAAAGCAAAAGTTTGCGAACTAGAAATCCAGTAAGTACCTTGCAAAAGAAGTAAAGCGCATGCGGCGAAAAGACATCACCGAACTAAATGGTTATATTTACAGGTTAAGAGGTAGCAATACAATAGTAAAAATTGGCCCGAAAAATCAAAGGAGCAATCACAGACTCAGAGGACTAACGAATATAGCGATACCTTTAGAGCAGATAAAAAGCTTTAAGGGTATTTTTATCTCCAAAAATCTCTCTTTTACTGGCCCATCCCCATATTCCTAATTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAGCAACATAACTCTAAACTTATAATGAACGTAGTAAATGAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.21%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //