Array 1 69770-69938 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB893663.1 Neomegalonema perideroedes DSM 15528 B161DRAFT_scaffold_3.4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 69770 31 96.8 38 .......................C....... ACTCGTCCTCGACCACGACGGTCTCGGAGACGGAGCGA 69839 31 100.0 38 ............................... TGGCTTCCTGAACCACGACGGTCTCGGTGACCGTCTTG 69908 31 93.5 0 ......................T..T..... | ========== ====== ====== ====== =============================== ====================================== ================== 3 31 96.8 38 TAGGTCGCCGGGATCACTTCGAGGGACTCGG # Left flank : GCTCGGTCACGGTGCGGTAGGTGGCCGGGACGACCTGAAGCTGCTCGGCGACTTCCTCGGCGGCGCCGGCGACGGCGACGCTGCGGTAGGTGGCCGGAACGACCTGCAGGGTCTCGGAGGCCTCTTCGACCACGACCGTCTGATCGACGGTGCGGTAGGTGGCCGGGATCACCTCGAGGGTCTCATAAGCGGGCTCGACGACCAGCTCCTGAGCGGCGGTGCGGAAGGTCGGGGGAACGATCTGAACCTGCTCGTAAGCGGGCTCGACCACCACGGTCTCCTGCACGGTGCGGAAGGTCGGCGGAACGACCGTCAGCGTCTCATAAGCGTCCTCGACGACCACTTCCTGCTGAAGGGTCTGGAAGGTCGCCGGAACGGCCTCAAGAACCTCATAGGCGGGCTCGACGACGACCTGCTGCTGGCCGGCGCGGAACTGGGCGGGCACCACGCGGAGCTGCTCGGCGGCTTCCTCGACCACGACGGTCTCGGAGACGGAGCGG # Right flank : GAAGCCTCGGAGGCGACCACGTTCTCAGTGACCGTGCGGTACTGGGCCGGGATCACGACGCGAGCGTAGCAACGGCCGGGGGCCGCGTTCGGCGGGTAGGCGCCGCCGAAAGCCGCCGCGGCGGCCGAGGCGCTCAGCGCGCCGGCCGGAGCCGCCGCCGCCGCGTAGCCGGCCTGACCGGACTGGACCGCATAGGCCGCGCCGGGCTGAACCGCATAGGCGCCGCCGGCCTGAGCCGCGTAGGCGGCCTGAGCCGCCGCGTCCGCCGCGTAGATCTGAGCGCCATAGCCGTCGGCCGAAGCCGCCGACACCAGCGCGCTGGTCGCCGCGCCAGCGACCACCAAGCAGCTGCTCGTCAAAAGCAGGCTCTTACGCTTCATTGCAAATCTCCACTTTTATCGCCTTCGCGCTCATCCCGTGTCGAGGGCCCGCCGGTCTGCGCCGACGCGTCCTCTCGGACCGAACCTTAGCAAACCTTGTTCCAGTCGACGTCCTTCTTG # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAGGTCGCCGGGATCACTTCGAGGGACTCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 2118-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB893664.1 Neomegalonema perideroedes DSM 15528 B161DRAFT_scaffold_4.5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 2117 28 100.0 37 ............................ TGGGCGGCGAGGGCGAGGAGGCCCGGAATCCGCCAGC 2052 28 100.0 37 ............................ GCTCATTCTCGCCTATTCCAAATTCCGGGAATCTCTC 1987 28 100.0 38 ............................ GTCTGACGGGAAAGGCGCTGAAGGCGGCAGGCTTCTCA 1921 28 100.0 37 ............................ ATAGGCAGAGGATAGGTCGCGCTAATCATCCGAGCAT 1856 28 100.0 37 ............................ CAGTACCAGGAACCAAGAGCGGCTGACCGGACAAGAG 1791 28 100.0 37 ............................ CCGTATCGCGTGGCCGGGAAGCCGCCGCACTGGCGCG 1726 28 100.0 36 ............................ TATGGGTTGACGGTCGGCGTCCGCAACCACTATCAC 1662 28 100.0 38 ............................ CCGCGCTCCGATTTGTTGGGGTGGCTTGAGGAGTCCCT 1596 28 100.0 37 ............................ CGGAGGCTTGGGCGAAATGGCAGGCGGAGTGACCCAT 1531 28 100.0 38 ............................ CTCAGCACCGCCATGGGCGCGCGCTCCGAGCCGTTGAT 1465 28 100.0 38 ............................ CCGCCGTCCACGAGCTTGTCGGCAAGCTCTGCGATCTG 1399 28 100.0 37 ............................ CGGCATCGGAGCCCCCGAGCAAGCCGCGCCGTTCGTC 1334 28 100.0 36 ............................ AGAGCAGGCGGCGGAAATCGAGGCCATGACGGCGGC 1270 28 100.0 38 ............................ CCGGGCTGAGCGAGGCGGAGCGGGGCGAGCTTGCGCCT 1204 28 100.0 39 ............................ TCGCCTTCCGCGAGATCGCGCCCGCCCTCCTCCATGCGT 1137 28 100.0 38 ............................ ACCCTGGCGCGCATGAGCGCATTCAGGCGCTCGATAAT 1071 28 100.0 37 ............................ GAGCCTCACGCTCTCCATCGCCGATCTGTGCGACGCC 1006 28 100.0 37 ............................ ACGAAGCGCGCCTCGGCCGCGCCGACGCCCAGAAGAT 941 28 100.0 38 ............................ GCGCAGGCTGGCCGCGAACGCTTCCGGTGGGTTTCCGA 875 28 100.0 37 ............................ GCCAGACGGGGGCCATCACCCCATCGCCCTCCCATGA 810 28 100.0 37 ............................ GCTGGATCTTCGAACCGCGCATGACGAGAGGATCATT 745 28 100.0 37 ............................ CGGCGCTCCTCGCGCCCGGCGCCGAGGCCGCGATCAA 680 28 100.0 37 ............................ TTTCGAGTCGGATGTGTCCAAGCGCCTGCGAAATATC 615 28 100.0 38 ............................ GCTCATTTTCTGCTCTCTGTGTGCGAGTTCGTGCCGCT 549 28 100.0 37 ............................ GACGGCCGAGGGCCGCAAGGCGGCGGAGAAGGCTCGC 484 28 100.0 38 ............................ CCCGGACGCGCCAGCAAGGCGATGGTCTACCTGGCGTT 418 28 100.0 36 ............................ GGGCGCAGGCCCATCGCGCCAGACTGAGGAGGCCCT 354 28 100.0 36 ............................ AGAGGCGGAAGAGGACGGCTACTCCTGCGCCATGTT 290 28 100.0 36 ............................ TACGTCGAAGGCCAGCTTCAGACGCGCAAATGGCAG 226 28 100.0 39 ............................ GGGGGATCTGGCCGCCCACGCCGCCGCCCTCGGTGCCGA 159 28 100.0 37 ............................ ATTCGTCGGACATCCCGGCGCCGACCAGCTCGCCGAC 94 28 100.0 38 ............................ ACGAGGCCCGCCGCGACCGCCTCGGCGTGCGGGCCGTA 28 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================= ================== 33 28 100.0 37 CTCCTAACCCCTCATGGGGTGACGGGAC # Left flank : AGGAAATCCGGTCCGCATTGCGCGATCTCCTAACCCCTCATGGGGTGACGGGACCGGCGGCGCGTCTCTGGCGGCGCAATTCCGGCTTCAGCTCCTAACCCCTCATGGGGTGACGGGACGCCAGACCCGCCCGATGGACCGCCCCGACAATTCATTCTCCTAACCCCTCATGGGGTGACGGGACCGGAGATCATCGGTGCTGACGGTCGAAAGTTCACTGCCTCCTAACCCCTCATGGGGTGACGGGACGCGGGGCGATCCGGATGCCTGCCTGATCCGGGGGGCGCTCCTAACCCCTCATGGGGTGACGGGACTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCTAACCCCTCATGGGGTGACGGGACTGAAACAATCCGCGCGTCGCGGCGTAAAGCGCCGCCT # Right flank : C # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTAACCCCTCATGGGGTGACGGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.10,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 4926-2304 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB893664.1 Neomegalonema perideroedes DSM 15528 B161DRAFT_scaffold_4.5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 4925 28 100.0 37 ............................ TTCCGGCTGATGCTCCTGCGCATGGGGATCTTGTCCT 4860 28 100.0 37 ............................ CTCCGGGCGCATGGGAGGAAGGGAGTCTGACGCTCTC 4795 28 100.0 36 ............................ GCCGATAGCAGCAGGCAGAGATGGGCCATGGCATTG 4731 28 100.0 38 ............................ ACGCCTTGAACTTAAAGACAATCTTATCGTCGTTTACG 4665 28 100.0 35 ............................ CTGGGGCGTCTGGGCATCGGCGGCGGGTTGCTCAA 4602 28 100.0 37 ............................ GTTAACGCATCCCGGTATGTGTCCGTATTCGGATAAT 4537 28 100.0 37 ............................ GCTTCAAGGGCGGTTCGAACGTCTGCGTCGTGCATGT 4472 28 100.0 37 ............................ ATGAAATGGGCCGGGCGCATCCTCTCGCGGATGCGGC 4407 28 100.0 35 ............................ CAGATGGCGCTGCAGCAGCTCGACCTCCTCGCCCT 4344 28 100.0 38 ............................ AGCCCGGACGGAGGCCCGCATGATCTGTCTCGGCCTCT 4278 28 100.0 38 ............................ CAGTTCGACATTTGTCGGAAATCGACCTCGGAGATGTA 4212 28 100.0 36 ............................ CGGCTTCCTCGGCGTGGGCAAGGACTTCTCGAACTG 4148 28 100.0 37 ............................ TTTCTCCCGCCATGGGAGTCGAGCAGTCCGCCACGGG 4083 28 100.0 37 ............................ GCCCTCGACGCCGAATTGCCTCTGGAAGAGCGGCCTT 4018 28 100.0 37 ............................ TCGCGATCCAGCATGGCGTTCACGCGGTCCTTGAGCA 3953 28 100.0 36 ............................ AACGCCCTCATGTTGGAACTCGGGCTTTACGAAGCC 3889 28 100.0 38 ............................ CTGCTCGGGACGGACCCGACGACAGTTCGGCGCTGGGA 3823 28 100.0 36 ............................ CTGCGCTCAAAGCCGCGAAGGAGGCCCCGCGTTCGC 3759 28 100.0 37 ............................ TCTCGCCAGCCCCGACCTTTTGCGCGATCACGCCGAA 3694 28 100.0 37 ............................ TCGCGCGGGCTTCGTCTTTGGCGGATGTGTCGATGCG 3629 28 100.0 36 ............................ CTACGCCAGCTACCGCGCCGGGATGCCGGATGTGCT 3565 28 100.0 37 ............................ GACGAGGCTTGCGACCGCGCCGAAACCGAGGCCGCTG 3500 28 100.0 37 ............................ GATTTCGGCAGCGGCTTGGGGCGCCCTTCGCGACCAC 3435 28 100.0 37 ............................ TCGGGCGGGGCGGCGACTGGCGCAGGTGTCTCGCTGC 3370 28 100.0 37 ............................ CCGCCTTCCGCGCCAACGTCAAGCCCGGCGTATTGAG 3305 28 100.0 37 ............................ AGGAAGGGAGGAGCCAATCGTATCGCGTGTAGCTCGC 3240 28 100.0 36 ............................ CGCGTGGGACAGCCCGCGCGCGGGATGCGAATTCGT 3176 28 100.0 37 ............................ TCGGCGGCGCTTTCGTCGGATATGGTCTCGAAAGTCA 3111 28 100.0 38 ............................ CAGCGTCGCCGCTTACCTTGCGACCCTCGCCCGTGTGA 3045 28 100.0 36 ............................ TACTACATGGCGCACGTGCGAGTGACCCCCAATGGC 2981 28 100.0 36 ............................ ACCCGGACCTGTGGTCCCCCACCGACTATTGAGGCG 2917 28 100.0 38 ............................ TCGATTTTAGCCCTCCGGACGCTTCGCCCGCCGAACAT 2851 28 100.0 36 ............................ GTGTTTCGCTATGCGATGCAGTCTCAACGATTCCAT 2787 28 100.0 38 ............................ GCGCAGCGCGTGGTCGAGGAGGCCGGGGATCCGCCAGC 2721 28 100.0 38 ............................ GCGATATGAATGTGCGTGACGTCCGCCGACTGCCCCGT 2655 28 100.0 36 ............................ GATGTCCCACAGGAAATCCGGTCCGCATTGCGCGAT 2591 28 100.0 37 ............................ CGGCGGCGCGTCTCTGGCGGCGCAATTCCGGCTTCAG 2526 28 100.0 37 ............................ GCCAGACCCGCCCGATGGACCGCCCCGACAATTCATT 2461 28 100.0 37 ............................ CGGAGATCATCGGTGCTGACGGTCGAAAGTTCACTGC 2396 28 100.0 37 ............................ GCGGGGCGATCCGGATGCCTGCCTGATCCGGGGGGCG 2331 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ====================================== ================== 41 28 100.0 37 CTCCTAACCCCTCATGGGGTGACGGGAC # Left flank : GTTCACGAAAACCTGCATCTCCCCGATGTTCTCCTAACCCCTCATGGGGTGACGGGACCCGTCAGCCGTGCGGAACCGGATCAGGTCTTCGTCCGTCTCCTAACCCCTCATGGGGTGACGGGACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCTAACCCCTCATGGGGTGACGGGACTGAAACAATCCGCGCGTCGCGGCGTAAAGCGCCGCCTCTCCTAACCCCTCATGGGGTGACGGGACTGGGCGGCGAGGGCGAGGAGGCCCGGAATCCGCCAGCCTCCTAACCCCTCATGGGGTGACGGGACGCTCATTCTCGCCTATTCCAAATTCCGGGAATCTCTCCTCCTAACCCCTCATGGGGTGACGGGACGTCTGACGGGAAAGGCGCTGAAGGCGGCAGGCTTCTCACTCCTAACCCCTCATGGGGTGACGGGACATAGGCAGAGGATAGGTCGCGCTAATCATCCGAGCATCTCCTAACCCCTCATGGGGTGACGGGACCAGTACCAGGAACCAAGAGCGGCTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTAACCCCTCATGGGGTGACGGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.10,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [1.7-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 5855-5302 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB893664.1 Neomegalonema perideroedes DSM 15528 B161DRAFT_scaffold_4.5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================== ================== 5854 28 92.9 35 ....C..................A.... AGTTCGGGCCAGACGCTCCCCGAGGCGGGGGGCGT 5791 28 92.9 38 ...............A.......A.... CGGGCGGCGATGGCGACGGCGGCGAGGTCGAACCCGAG 5725 28 100.0 36 ............................ CATCGCCTCTGTCAGGTGGTATGACTCCGCGCGACT 5661 28 100.0 42 ............................ CCGCCGAGGCCCAGCCCCCGCCGCTCTCCAGCGATTCGAGAC 5591 28 100.0 37 ............................ GGCTGCGGAGATAGTCGTGCACCTCTCGGGTGATTGT 5526 28 100.0 38 ............................ TGGCGAAGATCGAAGCCCTCAATTCCGCGATCCAAGCG 5460 28 100.0 37 ............................ GGTTGCAGTTCACGAAAACCTGCATCTCCCCGATGTT 5395 28 100.0 38 ............................ CCGTCAGCCGTGCGGAACCGGATCAGGTCTTCGTCCGT 5329 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ========================================== ================== 9 28 98.4 38 CTCCTAACCCCTCATGGGGTGACGGGAC # Left flank : CGCGACCGAAATGCTGCGTGTGGCCGCACAGCCTTCTCCGGCGGGTTTGGGCGAGCTTCTCTGCGCGGATTTCGTGCTCTCGGAGCCCGGATTCTGGCTCCTTCAGCGCAACGAGGGGCGGCTTTCTCATGAGAACGAGCTTCTGGGGGCCTTGCGCGGCTTCAACGCAAGCTGTCGCTTCGACTCCCTTGACGTTTCCGGATGTCAGACGCTCGCAAAGGGGATCAACCGAAATTCGCCCTCTGAAGTTGCGGAAGCCCCATCCCCCGTCGCGATGGAGGATTCCGAGCGCCCGGACAAACCGGGCGTCGGTGAACAATGTGCGCGGAAGCTTGGACTTTCGGATGAAGACGCGGCGGCTTTCGATCAAGCTTTTTCGCTGGCGAAAGGCGTTTTGTCTCCTCCCGCCCCCGCTTCCGATTAGAGGAAAGTCCGATTCCATCTCGCATGGGAGGATCGGGCCCGGAGTAAGAAAACTCTCCCGCCTCCCTCGCGGGCTC # Right flank : TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCTAACCCCTCATGGGGTGACGGGACTTCCGGCTGATGCTCCTGCGCATGGGGATCTTGTCCTCTCCTAACCCCTCATGGGGTGACGGGACCTCCGGGCGCATGGGAGGAAGGGAGTCTGAC # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTAACCCCTCATGGGGTGACGGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.10,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 1522647-1519226 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB893653.1 Neomegalonema perideroedes DSM 15528 B161DRAFT_scaffold_0.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 1522646 28 100.0 36 ............................ ATTCGCCCCGCCCATCACAGGCGGCCGCTTTGGCGC 1522582 28 100.0 37 ............................ CGGGCTTGCTGTCCGAGATCGCCCCGTCTTCGACGAC 1522517 28 100.0 37 ............................ GGGCGATGAAGAGCAGCCCGAGCGCCTCGATTCCGGC 1522452 28 100.0 37 ............................ CCCTCGCCCGGAAATACCGGGGCCGGGACGCGCGCCA 1522387 28 100.0 37 ............................ GAGCCAAGCGCCCGGCTTCCGGTCCTATCAGGTCAAC 1522322 28 100.0 37 ............................ TGAACTCCTCCGCCTATATGGATCTGGTCGATGACGC 1522257 28 100.0 39 ............................ CCGGGGGGCCTTAGCCTCGCTCGGGTAGACATAATCTCC 1522190 28 100.0 37 ............................ TGGAGGTCTCTCGCGAAGACCTGAAGCGCAAGGCGTC 1522125 28 100.0 38 ............................ AAGAGCCACGAATTCGGCGAGAAAGGCGTGGAGCGCCT 1522059 28 100.0 37 ............................ TGCCCGGCGGCGTCTGGGCTATGGGCGGCTTCGACCT 1521994 28 100.0 37 ............................ GGGGCCATAGCTGCCTCGGCGAGGATCATCCCTTCAT 1521929 28 100.0 38 ............................ AGGAACCGCTCGGCGACTCCCGCCAAACCTTCGGAGAA 1521863 28 100.0 38 ............................ GCGCTCGCGCGCGGCTTGGCTTCCTCGCTCGGCGTCAC 1521797 28 100.0 37 ............................ CACGGCCACGTCATAGCCTTGACGGCCCTCAGCGACC 1521732 28 100.0 37 ............................ GGGAACCTTCCCCATTGACGATCTGGGAAAAATCCCA 1521667 28 100.0 37 ............................ ACGCCGCCCCGACGGATATGGAGGCCTCCGCATGAGC 1521602 28 100.0 38 ............................ GCCTCGACCACGCCCGCCACCTGCAGCTCGACTTCGTT 1521536 28 100.0 37 ............................ CGGCGCAAAAAAGGAGGCGGATCATGACCTCCAGCCT 1521471 28 100.0 36 ............................ AGCGATCCGCTCTGTCGTCCGACCTGGTTTGACGAA 1521407 28 100.0 37 ............................ GGCCCCATCGTCCGCCATGCCCGACGCATGGGCCGCC 1521342 28 100.0 37 ............................ CGATGAACCTAAATTAGGCCAGTTTTGGCCTACCGTC 1521277 28 100.0 38 ............................ GAGCGTCGCGCGAGGTCGATCAGGCCCTTGTAGCCGAT 1521211 28 100.0 38 ............................ GCCCGAGGGGCGTCGCCGCCGACGTGGCGATCGAATCC 1521145 28 100.0 36 ............................ CTTGCTGCTCCGCCGCCTCTTGCAGCGTCACAGGGC 1521081 28 100.0 38 ............................ CGCTCTTTCGCCATGGCCGCCGAATAGGCGTCGGGCGA 1521015 28 100.0 37 ............................ GCGGAGCGTCGCCTTGAGCATGTCCACAGCCTTCGCC 1520950 28 100.0 36 ............................ TTGGACCGGTATGAGCGGCGACGGCGTGGCGGCGCT 1520886 28 100.0 38 ............................ CCGGGCTCGTGGGTGAGCGTCACGACGCAGGGGCCGTC 1520820 28 100.0 38 ............................ CCCCTTCTCCCGCGCCTCGGAGGCGACCATGGAGCGCG 1520754 28 100.0 38 ............................ CCGAGGAGCTGACCAACTGGGCCTCTCCGAAGGGCGTC 1520688 28 100.0 38 ............................ GCGCCGCTGATTTTCTTCGCGAAAGGCGTCCCGCAGAT 1520622 28 100.0 37 ............................ AATCGCTCTACGCCGACCAAAAGCGCCGCCGCGTGAA 1520557 28 100.0 38 ............................ GGCCCCGCGGAAGGTTGGGATCTAGAGGTTCCCACCTC 1520491 28 100.0 38 ............................ GCCTGATCGCCGCCAGAGGCCAACCGCGAGGCTTCGGC 1520425 28 100.0 37 ............................ ACGATATTACTCCAGAGGATGAGGCGATTCTGACTCT 1520360 28 100.0 38 ............................ CTGCAAAAGAAAGAGAAAAACCGCGCATCTCAGTGAAC 1520294 28 100.0 38 ............................ TCCATGCTCGCGGCTTTGGCGCGGCGCTCGGCGGCGCT 1520228 28 100.0 37 ............................ TCGCAGGCTGGCGTCCGGCCGGAGGCCCAACGAATTT 1520163 28 100.0 36 ............................ AAGAAGATCTTGGGCCTTCACGAAAGTTGCGCGGGT 1520099 28 100.0 37 ............................ AATCCGAGATCGCGCGCGATAATGTTCTGGTTCAGCA 1520034 28 100.0 38 ............................ CGGCAATGGCTGACCCTGACCCGATCCTCACGCTTGAC 1519968 28 100.0 37 ............................ TCCCGGCGCCGCTCTTTGCGCATTGGGTCAAAAAGAT 1519903 28 100.0 39 ............................ CATCGCCCAAGGGCGAGGCCAAGCCGGACGATGGCGGCT 1519836 28 100.0 36 ............................ AACGTCGTTCACATCCTGTTCGTATTGGTTGTCGGC 1519772 28 100.0 36 ............................ GGCCGTGGCCGCGCCTTGGGGCGCTTCCGCGACGCC 1519708 28 100.0 38 ............................ GCCTATCAGGGCTCCGTGACGCAAGAGCCCGTCGCCAA 1519642 28 100.0 38 ............................ ACGCGCGACGACCCGAGGATCTGGACTCGGACGGCGAA 1519576 28 100.0 36 ............................ CCAAGAGCAGCAGCAGGCCGCCGCCCGCGAGGCGAC 1519512 28 100.0 38 ............................ GCGACGCATAGCCCTGCCGCAGTTTTCTCGGAAGCTCC 1519446 28 100.0 35 ............................ TGATTGTCTCAGTTTCCGCGAGCCATAGACTCCGG 1519383 28 100.0 37 ............................ GACGGGAAACGCCGCCGAAGCCTATCGGCGAGCCTAT 1519318 28 100.0 37 ............................ AGGCCCGCATTCGCGCCCGCCGCGCCATACCATTCGC 1519253 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================= ================== 53 28 100.0 37 CTCCTAACCCCTCATGGGGTGACGGGAC # Left flank : GC # Right flank : CCTCTAAATTTCAATGAGCAAGCCTGAAAGCAGGCGTTGAAAAAGCGCTGAAATGCTCTGAAATCCCGCTCTTTACCACTACGCGCCCCCAAGCCAAACGCACGATGAGCCAGCGTAGTCAGAGTATCAAAGAGCCTAAGGAATGGCGCAAGAGCTCTTTCTCCTCCAGCGCTCCATTGCCCTCGTTCTTCACCAAAGACACAGCCCGCAAATTATGCCGATTGGCCGTCTGAAACTGCAAGAGGCGATCTCCAGGCTCCGCGACCTTCAGCAGCGCCGCCCTCAGTTTGCGATATTGCGATTCCGTCAGATCTCCCGCGAAAACCGAATTCTGCTCATGAGTCAGGAATTTCACCAGCAGCTTCTTGTAAACCTCGGTTCGCGCCGACGACACGTCATAGGTGATCACGAGGAACATCAGATCCGCCGTCTCCATGGCTTGTAATCGTCGATCCCCAGAAGATCCCGCTCCAGCCCCAGAGCCTCCTGACGGACGATCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTAACCCCTCATGGGGTGACGGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.10,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA //