Array 1 1078835-1078085 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFLRB010000002.1 Enterobacter bugandensis strain P7RS P7RS_S127_R1_(paired)_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1078834 28 100.0 32 ............................ AAAGGGGGTTGCCGACCTCGATAACCGTGCTC 1078774 28 100.0 32 ............................ ACCGTGGGGTTCATGGCTGGACATCATTGTCA 1078714 28 100.0 32 ............................ GGCGGCCAGGCTGACAACGTTCAGTGACTGGA 1078654 28 100.0 32 ............................ TGATGGCTACTCGCTCTCCTATGACATGACGC 1078594 28 100.0 33 ............................ TAAATCCCCGCCAACAGCCATTGTTTTATTAAA 1078533 28 100.0 32 ............................ GCTACCCGCTGCGCACCCCACGACGCCGCCAC 1078473 28 100.0 32 ............................ GCAGTACAACGGCCGAGGACGAGATTGACGTG 1078413 28 100.0 32 ............................ AAACATTCAGACATACGGCACGACAATTTATG 1078353 28 100.0 32 ............................ ATATGAAAATGGCGGGGATATCCCCGCCCTAC 1078293 28 100.0 33 ............................ TTAACGAGAGCGACGATTTCCCCGATCGAGACG 1078232 28 96.4 32 ................A........... TTCAATCGAATTAACCGACAGTACCGGGAGTA 1078172 28 89.3 31 ...........C...C......C..... ATAGAAAATAAGGCCTAACAGTCGTCGCACC C [1078147] 1078112 28 75.0 0 ........T..A....A....CCT...G | ========== ====== ====== ====== ============================ ================================= ================== 13 28 97.0 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGGGCTACGCGTTCGCTCTCATCCGGCGTCAGCGTCCGTCCCGCGCTTTTGCGGCGGGCCACGTTACGTTCGTTAATCCCGGTAACGCGTAAAATGTCCGCTTTCGACATGGCCGTCCATTCATGAATATTGTCGAGTACGCTGACGGGCAATCCCTGGTTGAGAAATTCTATCAGCCGCATACCTCTGTTCGCGGGTAAACCGGCGTAGCGCCAAAGTGCGTTATCAGCAGGTTTCTTGGCGGGGATCCAGGTTCTCATGTTACCTCCTGATTACTGTCATTTGTCATGGTTAAGTATAGCCATTTGTCAGATGGAGTGGAATGGGGATTTTTTGTGCAGGGTGGTTTGTGAGAAGAACGATGTTTTGACCCTAATTTTTAACGGTTGTGTAATTTATTGATTTTAAATGAGTATTTTTGGTGGATAAAAAAGAGGGTCAGAGAAGGTTTTTTAGCTTTTTTTGTATGCAAATCAGAAGGGTGTGGAGATATTATTTCA # Right flank : CTGGAACGAACGGCTAAATAATTGTTCAAATAATCAACAGCACCACTAAAAAATAAGGCCGGGAATATCCCGGCCTTATTTAATATTCATCTGCCATTACAGGCGAAAAAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAAAATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGCTCTACGCGAAACATGGTATTAGGCAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGAATTGCGCGATTAAAACGCAGCAAAACAGTTTCGGCGCATTGCCCAAGCGTCACGGTACAACCGAACAGGAAGCGCATTCGTAAAGGGGAGACAACAG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1089201-1088390 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFLRB010000002.1 Enterobacter bugandensis strain P7RS P7RS_S127_R1_(paired)_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1089200 28 100.0 32 ............................ TGTCACGCTGCACGGTTCCGCGCGGCGCTGGC 1089140 28 100.0 32 ............................ TGGTAGATTTCAGGCATGCCGCCCTCACCTAC 1089080 28 100.0 32 ............................ ATTTTCACATCTAACTAGTTTATCGTCTGAAT 1089020 28 100.0 32 ............................ AGGACAACGTAATCAATGATTTTCCCCTGCTC 1088960 28 100.0 32 ............................ AGCATCGAATCCAGCGGCGTGTTAGACGTGGC 1088900 28 100.0 33 ............................ AAATCGAAGCGAGTGGGAAAAGAACAGTCACAA 1088839 28 100.0 32 ............................ TGTCATATCGCCAATACTGATTGATCGACTTT 1088779 28 100.0 32 ............................ GTGAACAACATTGAGCTGAGGTTGCAGTTAAT 1088719 28 100.0 33 ............................ GTTCAATATCGCGTTCGATATCGCTGACATCGT 1088658 28 100.0 32 ............................ TCGAGCGTCATCGTTGGGGTTGATTTGGATTT 1088598 28 100.0 32 ............................ CGACGCGATTCAGGTCACCGGCACAAGTCAGT 1088538 28 100.0 32 ............................ CTGCGGAGCGGGGGGACCAACTTCTGAGGCGC 1088478 28 100.0 33 ............................ CGTGTCGGAAGAGGGACAGGGAAACGGGGCGTT 1088417 28 92.9 0 ................T......T.... | ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACTTCCGCAAACGCAGCCCGTTTGCCGTTGTCTCGGAGCCTACCTGGAAGAGGTGAAATCCGGCCTCACAGAATCAATGCGTGATTTTCAGGTGGTGGAATTTGAGGAAGAAGCGGAACAACCGCGACAAAAAGAGTGGTTGCTTGAAGATACAGAAACGAAGTGTGATTACTGCCGGGCGTTGAATCATGTGCTGCTGGTGTCGCATTTTGACCGCGACATGCTGCCGCTTCTTACAGGACTGCTCCATGACATCACGCATTCTATGGTTGCAGATGTCGTTGCGCCTCAACGTGCAGAAACGGTAGTTCACATTATTTCCTGAATGTAGTTTGTGACGTCCGAAGTAGGCCCCTGACGCCACCGGCTAGACCCTTTTTTTTGATGATTACGTAACCTTTTGATTTATATAATGCGAATTTACGTACCAGAAAAAAGGGTTTTATGCAGGAAGTTGATTATTTTCTTTTCTAACAATAAGATGGCGTAGTTTCCTTTCA # Right flank : GCCCCTCTGGGCTTTAATGCCGTGGAAATAGCGTTACTGTCCCATAGACAGTACAAGTAAACCCATTCCTCACAAATATTCATCTCGTCTATTTAAAACGAAATACCATCATCCACACGCTTTCCATTTGCAGATTAAATAAAAATCCCATTCAGGGGTTAATTATATTTCCGTGTATATATTATTTGTAAAAATAATACTTTTAAAAAAGGTTGTATTTTTGTTGAGTTATCACAGAAATTTCCATTCATTTGATATATATCACATTTGTATTTCTCTCATCTCCGATAACATATCCGCATTCATTACCTTGAAATAAAAGCCGTTGCTATGCCTGCAAACAGCGTTACCCCAACAGATTTAAAAACCATCCTGCATTCAAAACGCGCCAACATTTATTACCTGGAGAAATGCCGCATCCAGGTGAATGGTGGGCGTGTTGAATATGTCACCCAGGAAGGGAAAGAGTCTTTTTACTGGAATATTCCCATCGCGAATAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1104695-1104003 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFLRB010000002.1 Enterobacter bugandensis strain P7RS P7RS_S127_R1_(paired)_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1104694 28 100.0 32 ............................ TTTTCGCCCGTGTCCGACGCTTCCGGCAAGCT 1104634 28 100.0 33 ............................ GGCGTTCCGGCAAACGCTGACTTACGCTTCGTT 1104573 28 100.0 32 ............................ TTATAGATAGCAACGCCCACGCAAAAGCCAGC 1104513 28 100.0 32 ............................ GGTGAAATTGCCAGCTTGAGTAGCAATGTTCG 1104453 28 100.0 32 ............................ TGACCAGGAAAACACCTTCCTGATTGACGATT 1104393 28 100.0 32 ............................ GCCCCTTGTCTGCGTCAATTATTAATCACATA 1104333 28 100.0 32 ............................ TTCACAGTCTGCCCCAGAGCATCCGTAATGGT 1104273 28 100.0 32 ............................ GTTTTAATGGGCGGGAGATAGAGCAGACGCTA 1104213 28 100.0 33 ............................ TCCACGATATACGTAAGGGTATTGAACATAAGA 1104152 28 100.0 32 ............................ CTTATCCGTTACGGTTAATTTATGGCTATTAC 1104092 28 100.0 33 ............................ ACGACGGCCAGGAGAGAAAGTGCAATTTCTGCA 1104031 28 89.3 0 .....................A.GC... | C [1104005] ========== ====== ====== ====== ============================ ================================= ================== 12 28 99.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTCACGGTTTGCATAAGCTGTTTGGTGGCGTGGGCTTTATCAGCGGCATGCTGGTAGAGAAAGGGCTGCCGGGATTTATTGCCTACGGCGTGTTGATTGGCGAAGTGGTGGCACCGATCCTGATTATTGTCGGGCTCTTTACGCGCCCGGCCGCGCTGGTGCTGGCGTTTACGATGATCGTGGCATGGCTGATGGTGGGAGTGGGTGAAACGTTCGCGCTCGATAAGGTTGGGGCATGGGCGATTGAAAGTCTGGTGTACTTCTTTGTTGGCTCGCTGGCGGTGGCGTGTTTAGGGGCAGGGCGGTTTGCGTTAGGGAAAGCGCCTGCGTGGCAATAAAGCTGGGTGCTAAAAATATAAGGGTCTCTGGACCCTTTTTTATTGATGGTTTTTAAGTCTTTGATTTTATTAAGCGGAATTATTTGTGATGAAAAAAGGGTTTAAAGGGTATTTTTTAGGGGAATTCTTTATCTGACAAGGTGATAGGTGTAGATTGTTCCA # Right flank : CGTAGGCCGGGTAAACGCAGTGCCACCCGGCAAAAAAGCCCGGTGGCGCTGACGCTTACCGGGCCTACGATCGAACGTTTATTGCTTATGCGAGGACCAAATCCCCCTGCGGGTGGCATGAGCAGGCCAGCACGTAACCCTCGGCAATTTCCGCGTCGGACAGCATCATGGTGCTGGTGACGGTATATTCCCCGGAAACCACTTTCGTTTTACAGCAGCCGCACACGCCCGCACGGCAGGCCGCGACTACCGGCACCTTGTTGCTTTCCAGCGCTTCCAGCAGCGTGGTGCCCACGCGGCCAAAGAAGGTCTGTGCGGGCTGCAGTTTGGTGAACTGAATCCCGCTGGTTGCCGCTTCCGCCACCGGCGTGAAGAACCGCTCTTTGAGGAAGCGGGTCACGCCAAGCGCTCTAACTTCTTTCTCCACGATATCCATGTACGGCGCCGGGCCGCAGGTCATCACGGTACGGTTCGCAATATCCGGCACGCTTTGCAGCAGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //