Array 1 182611-181609 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTII01000002.1 Listeria monocytogenes strain FSL L7-0635 NODE_2_length_466968_cov_20.580844, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 182610 29 100.0 35 ............................. ATTTATCACTGCGATTAAATCGGGGGATTTTCAAG 182546 29 100.0 34 ............................. TTCCGTTTCTCTCTTTTGTATTGCCTTTCTTCAT 182483 29 100.0 38 ............................. CTTCCTTTTTAGAGGCCTTTTCCTTCTCTTTTGCAGCA 182416 29 96.6 36 .............G............... TTATGAATTAGTTTTGTTTTATACGTTGTTTTTACA 182351 29 100.0 35 ............................. TAACAATGAAGTGATTTGTTTATCACCACATGCTA 182287 29 100.0 35 ............................. ATTGGAAAGTGTTCTAAAAGCACTTGCACAATGTC 182223 29 100.0 34 ............................. ATCGCAATATCATTCCCTAAAATCATTTCTATTG 182160 29 96.6 36 .........................G... TTTGTTAACCCACTAGCTAAACCACCAGCGCCCTTC 182095 29 100.0 37 ............................. TTGATTATCTTGTAGGCCGCACAGACAATCCGCTTAT 182029 29 100.0 35 ............................. CAGTTTACTTCAATGGATGAAGCGCACGAATACAC 181965 29 100.0 34 ............................. TTGGATGAAGATGAAGTGATAAATGATGGAGAAG 181902 29 100.0 36 ............................. ACCAATGACCACAAAGCAAAGCAATTGGTGCTGTTA 181837 29 100.0 40 ............................. CTCACTTCCACCACCTCGCATTCTGTGTTTGTTTCGTTGA 181768 29 100.0 36 ............................. AACGCATTAAATGGCGTGGATTTATCGGATGTTAGA 181703 29 100.0 36 ............................. ACTAACAAAGCACCTGTAAAAGCTAATGCAATCGGA 181638 29 93.1 0 .......................C....C | A [181613] ========== ====== ====== ====== ============================= ======================================== ================== 16 29 99.1 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGCCTGTCGACCTCTAATAGCGTAAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGTAGAATGTCTTTAAAGGTTTTTAGCAAAAATCCGAAGGGATAAGTTATGATTTTCACCCGATTTTTAAGAGGTCGACAAATATAGTACCCTGAGTTATGATGGGAGTAGGCAGAAAATAGAGCGG # Right flank : TTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCTAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCCCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCAAACCCTGCTCCCGCGAAAAATAATCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGCACTTTCTTATTCGCAAGTAGTTCCTTCTCGACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTTTATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 199016-198209 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTII01000002.1 Listeria monocytogenes strain FSL L7-0635 NODE_2_length_466968_cov_20.580844, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 199015 29 100.0 35 ............................. ATGGTTAGCAAAATATCTGCATTTGATGGAAGTTC 198951 29 100.0 34 ............................. AAGATCATCAACAACAAGTGGATTCTCAACCACG 198888 29 100.0 37 ............................. CTTGTTGATGACATCACTTCTAGCTTCTCGGTTGCAC 198822 29 100.0 35 ............................. TTGCGTGATTCTGTGGAAAATCTTACACTAGAAAA 198758 29 100.0 36 ............................. CCTGCTAACAAAGAAATCATTTTGGACTGTGAAAAT 198693 29 100.0 37 ............................. CCATCTCTTCTATAGATTTTGCAGTGTAGATAATTTC 198627 29 96.6 37 .....G....................... TGTCAAGTGCTAAATCATTGTTTACAGAAGGTTCAAA 198561 29 100.0 38 ............................. ATGGAGAACATTGCTGCATACGACAGCTACGGGATTTT 198494 29 100.0 34 ............................. ATCAGTCCCATTAAAATAGTAATAGCTGCGTCTG 198431 29 96.6 35 ..............T.............. AGGTCGATGGCAATATCGGTTATTTGATTCTTAAA 198367 29 96.6 36 ..............T.............. CTTGGATGAAAATCTGCAATAGTATTTTGTTTTTGC 198302 29 100.0 37 ............................. AATCGTCACGATGGGAAAGTCATTGATAGCGCGCCAC 198236 28 75.9 0 A.....A.......TCA.-....A..... | ========== ====== ====== ====== ============================= ====================================== ================== 13 29 97.4 36 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : GCGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATTACATCTGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAACACCGGAGACCGACAGAAAGTTGTAAGTGGCTGGGGGAATAGGAATTTGGCGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : CCCCTTCATATACAACTCCACCACCATCCATCAAAACCAAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTTCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATGATTGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGCTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCA # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //