Array 1 12461-11504 **** Predicted by CRISPRDetect 2.4 *** >NZ_MQMK01000339.1 Micromonospora sp. Rc5 NODE_192_length_14603_cov_49.9494_ID_11979, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================= ================== 12460 28 100.0 34 ............................ TGAGCGCCATGCCCTTGATAAGACCACCACGGTT 12398 28 100.0 33 ............................ GTCGATCATCGTCTACCCCGTGCGGTCCACGGT 12337 28 100.0 33 ............................ TCTGCGTCACGATCTCCATCTGCGTAGCCGAAG 12276 28 100.0 33 ............................ CAGGGCTCACGATACGCCACAACCGGTAGGTAT 12215 28 100.0 30 ............................ CAGTCTCCCGAGCCGCCGCCGCCGCCGCAG 12157 28 100.0 33 ............................ GAGTGCCTGCACGTCGTGGTCGACCCGGACCAC 12096 28 100.0 33 ............................ TCGCACGGTCGATTCCGTGGCCCCCGCCTGCAT 12035 28 100.0 33 ............................ GAAGGAGATCGAGGCGCTGACCGGCTCGTACCG 11974 28 100.0 33 ............................ CGGCTACGGGTGCGCGCGGGCCAGAGTGCCGAA 11913 28 100.0 33 ............................ CGGCTACGGGTGCGCGCGGGCCAGAGTGCCGAA 11852 28 100.0 33 ............................ CGCCTCCGGCAGCTGGAGCCCCTTGCGGCCGTC 11791 28 100.0 33 ............................ CGTGATCTCGACGTGGGTGCGGGTGTGCGTGCG 11730 28 96.4 33 ..........T................. CGTGCTCCGCCGAGCCCGACCCGGCCGCCCTCG 11669 28 100.0 33 ............................ TAACGCGAACACCGCGTGGGGAACCTGCACCGG 11608 28 100.0 49 ............................ CAGACGGGCGTCTGTCGCCGACAGCGTCCTCGCCGAGCAGGGCGCGGGG 11531 27 85.7 0 .A......A-.....A............ | T [11509] ========== ====== ====== ====== ============================ ================================================= ================== 16 28 98.9 34 CTGTTCCCCGCGCACGCGGGGGTGATCC # Left flank : AGTACAGCCGCGTCTTCGAACACTTGGTCGCCACGGCGGCCGGCGCTCGGGAGTCGCGCGACCTGATCCAGGAGGCGATCGACGGGCTGTGAGAGGACGGCGCGGGTGGAAGAGATCAACCAGGCCTCGGCGACCTGGCGAAAGAGCACCCGCAGCAACGGCTCCGGAGACTGCGTAGAGGTCGCGGGCCTGCCAGGCAAGATCGGCCTCCGCGACAGCAAGGACCCGGCTGGTCCGGTATTGATCTTCGAGCAGGCCCCCTGGGCCGCCTTCATCGAAGGAGTCAAAACGGAAGGGGCCGGCCGCGAGTAACCAACGGTTGAGCCGGCATGAGGCCTGGTGTTACCCCAGCCCTTGCTTAGCCCTCCCGACAGCAAACGGCGTCCAGCCCATCCGTTGCACTCGACCGAACAAGACAGCCGACAGCGGACGAGGTGATCTTGGCAGGCAAAGTGAATGAAATTGACGGAGTTGATCTATAGCGCCGCAGGTCAAGAAGC # Right flank : CTTGACCGTCAACTGGCCGGGCCCGCCGGGCCCCTGCTCACCGCGCACGGGCCAAGGCAGTCCTGTCGTCGAAACTTGCCCGGCTCACCCATCAACGCGCGATATCCACGGCAGGGGAGAATGGCATCATGCAAGGCGTCCCCGACGAGAGGTGGAACAGTGTCTCGAACCATCATTGTTGCCGATGACCAACCGCTCGGGGAGGCGGCGAAGATCCTCGGCGCTACCATCAAGAGGATCACCACTAGCGCGGCGCTGAAGTCGGCGGTCGACCGAAAAAAGCGTCGGGAGTTCGCCGACTGGCTCAAGAGCGGCGGCCTTCCCGGCTTGGCAGAACCGGTCGTCGGCGAACGGAACAACGCGTGAGTCACGTGAGCCTCCCCCCTGCGCGACAAGTCGACATTGGCCCACTAGCCGAAGCTGGCCGCACACGCCTCGCCTTTGGGCACCGAGGTCATCGGAACATGCGATCCTGCCCAACGAAGTGAATGAAGTCCGTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 5838-4834 **** Predicted by CRISPRDetect 2.4 *** >NZ_MQMK01000242.1 Micromonospora sp. Rc5 NODE_320_length_6188_cov_74.0035_ID_12235, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 5837 28 100.0 33 ............................ CTAGCATTTGGCATGCGGGACCCCGACGAACAG 5776 28 100.0 33 ............................ CGACCCCGAGGAGTGCCGCCCGGGGCTGTCCAT 5715 28 100.0 33 ............................ CGGCCATCGTGACCCCGTTCGTCCCCGGGTCGA 5654 28 100.0 33 ............................ CGCGTCGACGCAGCTCATCTCCGAGCGGCTGAT 5593 28 100.0 33 ............................ CCCGGTCGATGACGAACAGCTTGCCGAGGTACG 5532 28 100.0 33 ............................ CCCCGGAGGGTCGTGCCGTCGTCGAAGGTGACG 5471 28 100.0 33 ............................ CGGGCCCCCGGAGGAAGGGGGCCCGCGCTGAAA 5410 28 100.0 33 ............................ TCGCCATCTCGCCAAGCAGGGATGGCCGGCGGC 5349 28 100.0 33 ............................ CGCGACCAGGTCGATGCGCGCCGGCAGGTTCAG 5288 28 100.0 33 ............................ CCACAGGTCCGCGATCTCGGGCGGACAGAAGCG 5227 27 96.4 33 .................-.......... CAATCCCTTTACGCGCATGGCGTGGTTCTTGCT 5167 28 96.4 34 ..........A................. CACCGTCCGGGCCTGGGTGTCGATGTCGAGCCAC 5105 28 100.0 33 ............................ CCCCGGTCGTCCGGTGGCCGGTCGTATCTTCGG 5044 28 100.0 33 ............................ CGAAGATCACCCCGGACCCTTCGAGCCCTAGGC 4983 28 100.0 33 ............................ CAGCATCGTGTCGATGCTGACGGCCGGCGGGTG 4922 28 100.0 33 ............................ TCAGGCGCTCTACCACCAGCCGGCGGCGACCGG 4861 28 96.4 0 ..........................T. | ========== ====== ====== ====== ============================ ================================== ================== 17 28 99.4 33 CTGTTCCCCGCGCACGCGGGGGTGATCC # Left flank : GGGGCCCAACGACTCCGGGATGGAGTTGCCGAACGGTTGCGGTCGTGGGTGGTTGGGGTGGGATGCCATCCCGTCCACCGCCGACCCAGGCAGAGCCGAGCAGACCAGGGCCAGGGTGACAAGGTCGTTCGTCCGGTAGGGCGCTCCACCTTGTCACCCTGGCCCTGGCCCGCTCCACGGTGTGTGGGTCGGCGGCGGACGGGATGGCAGGGGCGGGGGCGCGGTGCGCGCCAAGCGCGGCGAGTCAGCGGTACCTTGTCACCAGTAACCGGCGGCACAGGCGGAGGGATCTTGGGCGAGGAAGTGAATGAAATCGGCGCTGTTGATCTTTAGCGGCCCAGGTCAGAAAG # Right flank : GGGCAGCACAGAGGCAGCGAAACGGTTGCCAGCCGTTGATGGTGCCCGAGGCTCGACGTGCACCACGGCCACCTGAGCGGCACCAGAAGGCAACGGCTTGCAGCCGATGATGCGCCATGTCGGCGTTCACACCGAAGAGGTCACTGGTTCGATCCCAGTATCGCCCACGCAGATCAAAGGCCACCTTCCATCGATGAAGGTGGCCTTTCTGCTGCCCGTACAGCAGCGAAGCACAGCAGTTCTCGTCAGTGCCCGAGTGACTCACCGAGGCGCTTGAGTGCCTCCCGGGTCGCCGTGGACGAGACCTGGGTGTAGATCTCCATCGTCACCGAGAACCGGGCGTGCCGAAGGATCTGCATGGCAACCCGTGGATGCACGTCGAGGTCGGCCAGGAGGGTGGCACAGGTCCGGCGGGCACGCCGGTTGCCGCACGCCTTGTAGAGCACCCGATCGGGCAACTCATCGGTGTGCTGCTCGGTTAGGACCCGTCCGGTGTCCCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 5236-4048 **** Predicted by CRISPRDetect 2.4 *** >NZ_MQMK01000011.1 Micromonospora sp. Rc5 NODE_73_length_32168_cov_58.8523_ID_11739, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 5235 28 100.0 33 ............................ CAGGCCGTCGTCGCCGCAGCAGCCGCCGTCGGT 5174 28 100.0 33 ............................ CGACTACGAGCGGGTCGCTATGTTCGCCGTAGT 5113 28 100.0 33 ............................ GTCGATCGGTGTCATCGACTTCGTCGTTAAGGG 5052 28 100.0 33 ............................ TGGCCGGCATCTTGGCCTGCAACACCGCCAGGT 4991 28 100.0 33 ............................ ATGCCTAGGGGGCAGCCTGCCGCGCATCACCAC 4930 28 100.0 33 ............................ GAATGCTAGCCCCGCGTACATCAAGTGCGATCG 4869 28 100.0 33 ............................ CGGAGGCCTGCCGTGGCGTTCAGCGACGAGCAG 4808 28 100.0 33 ............................ CGCGGAGCCGGAGAAGACCATCATCCGGGTGTC 4747 28 100.0 33 ............................ CAGGGCCAGCGCGATCGGCGAGGCGGTGCCCAG 4686 28 100.0 33 ............................ CTTGCCACGGTCACCGGCGCATTCGGGAAGATC 4625 28 100.0 33 ............................ GTCACCGTGGCCGGCGACCACCGCGCAGCTCGG 4564 28 100.0 33 ............................ GTACGGCGCGGACTGGTGGACGTTCGATGAGAC 4503 28 100.0 33 ............................ GTACGCGGGCGACCCCTCGGCCCCGTCGTGCGA 4442 28 100.0 33 ............................ GACGAGGCGGTGATCCCACTGTCCAAGCTCGCG 4381 28 100.0 33 ............................ CCAGGGAGGCGCGGCCGTGTCGTCGCTCCATCG 4320 28 100.0 33 ............................ CCACGCCTGGTAGTCGATGCCGCCGTCGCGCAG 4259 28 100.0 33 ............................ GGCGTACAAGGACGCCGACGGGCAGGGCAAGAA 4198 28 100.0 33 ............................ CACGCCGTCGGGGTCGGGGATCGGCGCGTAGTG 4137 28 96.4 34 ............T............... CTAGATTGCGCCCCAGTCCACCGGGACGGTCTGG 4075 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================== ================== 20 28 99.6 33 CTGTTCCCCGCGCACGCGGGGGTGATCC # Left flank : GCGACGTGCCGTCACTCTGGACACGGCCCAACGCCTGCATACCTCCGACTCGGGAGGCAGCGCCGCTCCGGGTGCTAGCTCCCCGGCTTGGATCGACTCTCGCAGGGTCTGGGCGATCTCGCGATAGCCGGCACCTGGGATGCCTCCGGTCTTCACAGGTCTCCTCGCTGTCGTCGGGTGCATAGATCAGGCTATGCACCCGACGACTGGGCGGCCACCTTCCGGCGCGCTCGCCGGGCGGGTGAGGTGTGACCCGCGTGCCGTATTCGTGTCTCGTGTCCGAGATCACCAGCGTTCGCGCTGGTCAGCGTCCTGAATGACGTGGGATTCCGCTCTTCGGCCGCCGCGCGGCTGTGCGGTCACCGGGGCGCGGGGCGCGCGAAGCGCGGCGAGTCAGCGGTACCTTGTCACCATCAACCGAGCGGCGCGGCGGAGGGATCTTGGTCGGGCAAGTGAATGAAATCGGCATTGTTGATCTTTAGCGGTCCAGGTCAGGAAGT # Right flank : GGACTACACGTCCGGGGCGACCGAAGGTGAGCGCTGTTCTCCGCGCTCTACCTTCGTTCCCTCCATGTCGTGTATGTGTCGGCTGTCGCCGATCAGGTTTCGTTGGTGCAGGTCAGCCCCGTGTGACTCTCGGTCTTGAAAACCGGTAAGGCAGCGATGTCTTCGTGGGTTCGAATCCCACACCCTCCGCCTCCTGAGCAGCGGAAACACCCATGAAGGGGTGCCGAGGCACGATGTGGTGGCCCGCCATATCGCGGTATGGTGATTGTATGGCTTCTAGGAAGATCACCGTCACCCTCCCCGAAGAGTTGGTCGAAGCGCTCGGCGCGGCCGCTAGTGAGGATGGGGTGCCGCTGTCGAGGCTGGTCGCCAGCGCAGCGGAGAGCGAACTCCGGCGGCGGGTGGGTCGACGGTTGGTCGCGGAGTGGCAAGCCGAGCATGGAGCGTTCACGGTGGAGGAACTCGCCGCAGCGCGCGCCGAGATGGCCGCCGCCGACGCC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 6153-3987 **** Predicted by CRISPRDetect 2.4 *** >NZ_MQMK01000056.1 Micromonospora sp. Rc5 NODE_69_length_32795_cov_58.2556_ID_11731, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 6152 28 100.0 33 ............................ GAATAAGGGAAGCTTTGGGGCCCGCACGCATAA 6091 28 100.0 33 ............................ CAGGTTTCCCCTCCCTGGCGCACCTGACTAACG 6030 28 100.0 33 ............................ GCCGTACCGCGTCTACCTGGGCGGGCCGGACGA 5969 28 100.0 33 ............................ CCCCGATCCGAAGTCAAGGGAGTTGCAAACAGC 5908 28 100.0 33 ............................ CGCCGGCACGGCCGGGTCGGGCGTGGTCAAGAC 5847 28 100.0 33 ............................ TCCATGAGCATGCCGACCTGTGCACTAAGCGAC 5786 28 100.0 33 ............................ GTTGCCGCGGCCGACGGTCTCGCTGCCCTCGGC 5725 28 100.0 33 ............................ CGACCTTTATGATCCTGCCACTAACGCGAGAGT 5664 28 100.0 33 ............................ CTGGAAAGGCGTTCGGGTAGCAGCGTCGCACTT 5603 28 100.0 33 ............................ CGTCCGCCGATCCCAGTTCGGCAAACACGACAA 5542 28 100.0 33 ............................ CGGCCGCCAGCACCGCCGCGATCCGGATCTGCT 5481 28 100.0 33 ............................ CGGTGGCGATGAGGCTGACGAACTGACGAAAAC 5420 28 100.0 33 ............................ CCGGTGTTGATCGTGCCGGAGTCGTCCGTCTTG 5359 28 100.0 33 ............................ ATCCCGTACGGTCATTCGTACGGAACCCCGTAC 5298 28 100.0 33 ............................ CCGGGTTCCGCGCCCTCTGTCGCAGAGAGGAAC 5237 28 100.0 33 ............................ CGAGCGGCGCGCGCTGGCCGGCGACGGGCAGGT 5176 28 100.0 33 ............................ CGGGATCACCAAAGAGCATCCGGCGGGCACCCG 5115 28 100.0 34 ............................ CGCGACCGGGCCGGTCGGGAAGTGCGTGATCCTG 5053 28 100.0 33 ............................ CCCGGACCAGCAGGTGCCGGTGGGCGACTGGCT 4992 28 100.0 33 ............................ GCCGTCGGCGATCTCGCTGTCGGTGTGCCCCTT 4931 28 100.0 33 ............................ CTGTGCAAGATGCTGTTGCGCGGTGGAGCTAAG 4870 28 100.0 33 ............................ CCCCATTGGACTGATCATCATTGGGATTGTGGC 4809 28 100.0 33 ............................ CCCAGGGAGCACCTTGTCCAGGCCGGCGGAGAC 4748 28 100.0 33 ............................ CGGGGCGACCCTCGACGAGGGGACGGAGAAGGG 4687 28 100.0 33 ............................ CAGCCCGGCGAACTCCAGCTCGAAGTCGGTGTC 4626 28 100.0 33 ............................ CTCCCAATCGCCGCGATCGCGGGTGATCGTGAC 4565 28 100.0 33 ............................ CTGGCCTTGGGCGTCGTAGACGTTGATGCCCAG 4504 28 100.0 33 ............................ CTTGTCGAGCTGCTCGGTGTAGCCCTCGACGAG 4443 28 96.4 33 ......G..................... GGGCGTCATCGTCGCCTGCCTGGGGAAGAAGCG 4382 28 100.0 33 ............................ CCTCCTGGCCGCCGCACTCAACCCGCCGACGCC 4321 28 100.0 33 ............................ CGGCTCCCAGATCGGCGGCGGCCCGGACCGCAG 4260 28 100.0 33 ............................ GGCCAGGCGGCGGGGGTCGGGGATCGTGGTCAT G [4243] 4198 28 100.0 33 ............................ CTGGAAGGGGCTCACCACCGTCAGCGCCCACTT 4137 28 100.0 33 ............................ CGTCATCGACAGCGACGCCGGACAGCCGATGCG 4076 28 96.4 33 ...............A............ GCTGATCTTCGACGTGTCCGCGACGTGGCTGGG T [4065] 4014 28 92.9 0 .........A...............C.. | ========== ====== ====== ====== ============================ ================================== ================== 36 28 99.6 33 CTGCTCCCCGCGCATGCGGGGGTGATCC # Left flank : GGGCAACGGCGCAGCGATGGGCCGCCGGACACTTTCCGGCAGCCACATGTCCCACAGCAGGCCGGCGACATCGGCACTGTCGGCGAGGTGACGATGCAGCGGAAGCCAGAAGCCCCGATCGCGGTTCGTCTTGCCCCAGACAAGACGGGCACTCTCGCTGAGACCAGGTCGATCGGGCACGGAGGAGATGAGAACAGAGGGGTACGACACCTGACGACCTACTTCCAGGGACGACTCACAGACCGACCACGCGGCCGCTTTCAGCATCGAGAACGACGCTCATATACGCCCGGACGCGGCCTGGCTGGAGATCGAGCAAGATTAATCCGGTCGCCGGAACCCCTCCCCGTCGGACGCCCTCGCGGAGATTCCATCGGTACGCTGATCCGGCTGCGACTCACACCAACCCAACCGGCGCGCTCGATTCCAACAGCGATGGCCTTGAGAGGCAAGTGAACGAAAACCAGGAAGTTGATCTTTAGCATCGCAGGTCAGAAAGC # Right flank : TGCGGCACTCGTCGTTCGGCATCCGGCCTGGCCGCGCTACCCCGCGCACCACCGTGCTTGCGCCTAGTTGCTGCTAGCGCTCGGCGACGAAGACACCTCGGCCGGGGCGGCCCACCAGGACGCCCCGCTTCCGCAGCGTCGCCCAAGCCCGGTTGATGGTCGACAGCGACACGTCGTACTCGTCGGCCAGCACATGACCGGGCGGCAACTGGGCACCACGAGGCCACTCCCCCTCGTCGATTCGCCTGACGAGATCCTCCAGCAGTTCGTTCATGGTGGGCGGGATAGGCACGAGCACCCCTTGCAGTCGGTTGGCTTTGCCAGTATCGATCCACCTCCTGAGACAGGCAAAACACCTAAGCCATTTGGCAGTGCTGACATAGGTGAGGACACTGCGACTGCTCTTGACATTGCTTCGAAGGGTCCGTACGGTCGCTTTCAGTGACGCGGCGCCTGCGGTCGGTTGGCGCTTGCCGTGGTGGTGGCCCGTCCCGTCAGCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 2 15952-16651 **** Predicted by CRISPRDetect 2.4 *** >NZ_MQMK01000056.1 Micromonospora sp. Rc5 NODE_69_length_32795_cov_58.2556_ID_11731, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15952 29 96.6 32 ............................G GGCACGCGTCATGATGGGTTGGCGGGACATGG 16013 29 100.0 32 ............................. ATCAGCGGCCCCGGCCTGTCGAGGGAGACCCT 16074 29 100.0 32 ............................. CCGGTCGCGAAGCGGGTCAAGGTGTCCCGCAA 16135 29 100.0 32 ............................. CCGGTCGCGAAGCGGGTCAAGGTGTCCCGCAA 16196 29 96.6 32 ............................G CCGCCGCACTTGGCTTGGTCGGCGATGCGCCA 16257 29 100.0 32 ............................. CGGATTTCCAGCTCGTACGCGTCTTCGGCGAG 16318 29 96.6 32 ............................G GAAGACGCGCCGTTCTCGTGGATCAGCACCGT 16379 29 100.0 32 ............................. GGGCGCATGACAGCCACCGGGGCGATCGGGTC 16440 29 100.0 32 ............................. GATCAGCCGGCCACCGTGCACGAGATGGAGGC 16501 29 100.0 32 ............................. AGGACCAGGGCGACGACGGACGCGCCGCCGTA 16562 29 100.0 32 ............................. CGGCAGATCAACCACATCGAAGCTGCGATCGA 16623 29 86.2 0 .........TT............A...G. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.0 32 CTGCTCCCCGCGCACGCGGGGGTGATCCC # Left flank : TGTGGGACGAGGAAGGCTACGAACTCGCCGGCGGCCGGAACTACTCCGGGGACGTGGACTTCTGATGACCGTCATCATCCTCACCGCCTGCCCCGAAGGGCTGCGTGGGCACCTGACACAGTGGCTGCTGGAGATCTCTGCCGGGGTGTACGTGGGGCACGTGAACAGCCGGATCCGACAGCGGCTCTGGGCCAAGGTCGTCGAGATGGCCGGGCCAGGCCGGGCACTGCTCGTCTACCAGCGGCCAGGCGAGCAACGACTGACCTTCGAGGTACACGACCATCACTGGGAGCCGGTGGACTTCGACGGGATCACGCTGATGCGTCGGCCTACAGATCGGAGGTCGTACAACCCGGCAGTGGGCCCAGGGTGGAGCAAGGCATCCAAGCGCCGGAGGTTCGGGCGGAGGGCCCCAGATGGGGGCAGCGGATCGTCGGTGCCCTCCGAACAAAGTGAAGGAAAGAGGGGTAGTTGATCTTTAGCATCCCAGCTCAGGAAGT # Right flank : CGGATCTTGAAGGCGACGCCGGACTGGCCGACGGTGGGAGGCGTAGCGGCGATGGTACCGCCCGCAGTACCGTCGGCTCGTGCCGTCCGTAGCCAAGCTCGTTGCAGTGATGCGAAGTAACCAGCAGAACACTGCCTACAACGATCTCTACGCGGTGTGCGAGCACTACTTCGGGAAGCCCCGGCAGGCCGGCACCTCTCACGCGGTGTTCAAGATGCCCTGGGCGGATACCCGCGAGTCAAGATCCAGAACGACAAAGGCAAGGTCAAGGCATACCAGGTACGGCAGGTGCTCAAGGCGATCGACAAGAAGGAGGCCCTGTGATGGACCCCGAAACCCATCTTGACATCACCCACTACACCTACCGCGTCACCTGGTCCGCCGAGGATCGTGAGTTCGTTGCGACCTGTGCCGAGTTCCCGTCGCTCTCCTGGCTCGCGTCGTCGCAGGTCGGCGCGCTTCAAGGGCTTCAGGACCTGCTGCGCGAGGTGATCGCGGAC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCCC # Alternate repeat : CTGCTCCCCGCGCACGCGGGGGTGATCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //