Array 1 220284-217020 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI391968.1 Actinomyces viscosus C505 supercont2.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 220283 29 100.0 32 ............................. GAAGACCCCTCTGTCTCTGGAGGCATCCTCTA 220222 29 96.6 32 ............................T TCCAAGGTGTTCCCGTACAAGTATCCGGCGCT 220161 29 100.0 32 ............................. CTCGCAACCGCGTACTACGAGCTCATCGCTGC 220100 29 100.0 32 ............................. TCCGGGGCATTCAACCTCGACACGCTGCGCGA 220039 29 100.0 32 ............................. GAGGCGTTGCCGGTCACCGTGAGCTGGTCGGT 219978 29 100.0 32 ............................. CAGATCGCAGACATCGTGCTCCCGCCGGCCAA 219917 29 96.6 32 ............................C GTCATTGCACCCAAGCCGATGTCCGTCATCGG 219856 29 100.0 32 ............................. CAACCGCCGAAGTGTGCCGCATGATCGCCGCA 219795 29 100.0 32 ............................. CACCGGAAGTGAGAGACGGCGGGGATTGAAAA 219734 29 100.0 32 ............................. GTGATGGACCGGACGCCCTGGCTGATCTGCTG 219673 29 100.0 32 ............................. GAGATGCAAGCCGTCAGAATCGCGGAACCGTC 219612 29 100.0 32 ............................. TAGCAATAACCATGAGCCCCATCCAGTGCCCC 219551 29 100.0 32 ............................. GCCCGCCGGGACGCGAAGCTGGCTCGGGCCGC 219490 29 96.6 32 ............................C GCGCCACAACGCCCGATCAATATTACCAAGAA C [219485] 219428 29 96.6 32 ............................C TGGGGTGGACGAGAATTCCCCTGGGGCGTCGC 219367 29 100.0 32 ............................. TCGGCCCGCGAGACCTGGAGGACCGGCGCCGT 219306 29 100.0 32 ............................. CCGGGGGAGTCCCGCGCCCACGCCTTGGCCCG 219245 29 100.0 32 ............................. TGCTTGAAGGTAGCCACGCGGCGCTCGCCGTT 219184 29 100.0 32 ............................. CCGGAGCTCGACGCTACGGTGGAGGACGCCGT 219123 29 96.6 32 ............................C AGCCGTCCACCGGGAACAGGTCGAGCTTCAGG 219062 29 96.6 32 ............................C GGGCGCAAGTCCTTCCCGATCATCTCCGGCAA 219001 29 96.6 32 ............................C GGCGGGTCTGCGATCCTGTGGTGGAAGGGGGC 218940 29 100.0 32 ............................. AAGCTCTCAGAAGAACCGTACGGGGACCTGGA 218879 29 96.6 32 ............................C CTGGCGTCCTCGGGGACGTCCACGAGGGCCGT 218818 29 100.0 32 ............................. GGGGGCTCGCCGGACTGGGAGCCCCCAGTCCC 218757 29 100.0 32 ............................. GGGCGACCACGAGAGAGATCGCTACGTGGATG 218696 29 100.0 32 ............................. CCAGTAGGTTTTCTTAATTCGATCGTTCAAAG 218635 29 100.0 32 ............................. GCCAGCGTCCCCTCCTTTGAGTGAGCGAAACC 218574 29 100.0 32 ............................. AAGCGCATCTCCCTGAACCCGAAGAGCCTGAT 218513 29 96.6 32 ............................C AACTCAAACACTGAGGCATTCATTCTCTGGTG 218452 29 96.6 32 ............................C CAAAGCCCCGACCAGCACAAACACCAAAAATC 218391 29 100.0 32 ............................. GGCAACCATGATGTTGAGGTTGTGGTGGTGTT 218330 29 100.0 32 ............................. TCTCAGTCAGACGGTGGGAAGCGGGTCGTCCT 218269 29 96.6 32 ............................C ATGTCGCAGTAGGGCACGCCGCTGGCACCGAA 218208 29 100.0 32 ............................. GAATCGATCATGACAGATTTCGACGTTGCCGC 218147 29 100.0 32 ............................. GTCTTGGCAGCCGCGCCCCACCCCGGAGCCCC 218086 29 96.6 32 ............................C ATAGGCAAAGTGTCAGAGCCCAGCCGTCCACG 218025 29 96.6 32 ............................C CAGGAGATCGCGGACGAGTTCAATACGTCCGA 217964 29 100.0 32 ............................. CACGGAAACGGTAACGGGCACGGGCAGTCCCT 217903 29 100.0 32 ............................. GCTCATGGGACGTTGACGAGGCGTCCAGGCGG 217842 29 96.6 32 ............................C ATCACCCCGTTTACTTACCGTGACGGACTGAC 217781 29 96.6 32 ............................C GGCGGCATCTGGCCGAAACGTAAACATGTAAA 217720 29 96.6 32 ............................T ACGCATTCTCCCTGCGCTGTCCCGATGGTGAG 217659 29 100.0 32 ............................. TGGCGCAGCTGGTGTGCGGTGGCGTCGATGCC 217598 29 100.0 32 ............................. CGACGCGGGCCGCACGTGCACAGCAGCACGAC 217537 29 100.0 32 ............................. GAACACCACATGACCACCACCGACCACCGCCG 217476 29 96.6 32 ............................C TACGTCACGAAGCATTATCGTTGTTACTGACA 217415 29 100.0 32 ............................. AGCCTGAGCCTGCCTAAGGCACCCGCGACGCT 217354 29 100.0 32 ............................. GTCTTCCGCAAGGACGGGCAGGTGCGCGCCCA 217293 29 100.0 32 ............................. ACGCTCGCGGTGTCCCCGCGTCCCAGCATCTG 217232 29 100.0 32 ............................. GAGACCTACACCGCTGTTGAGACGAAGGCCCC 217171 29 96.6 32 ............................C ACCCATTGATCATTACCCCGTGGTCACCCTGG 217110 29 100.0 32 ............................. GCCGAGCTGATGGAGCGTGACAACATCACCAA 217049 29 79.3 0 ..G...................ACGG..T | A [217023] ========== ====== ====== ====== ============================= ================================ ================== 54 29 98.5 32 GTAAACCCCGCGCGAGCGGGGATGATCCG # Left flank : GCAGCGTGCTGTAGCTGGTGGGGAGAACTACGCTGGAGAGGACGCAGGGGGATGGTAGTTCTGGTTCTCTCTGCTGCCCCTGCCTCGTTGCGGGGCTCCATGACTCGCTGGTTGTTAGAGGTATCTCCTGGGGTCTTCGTCGGGCATCTCTCCGCTCGAGTGCGAGAGCAGTTGTGGGAGTTGGTGCGCGCATACATCGGGGAGGGGCGGGCTCTACTGATCTGGTCGGTGCGATCCGAGCAACGGTTCGAGATCGCCTCCCTGGCGCACGAGCGTGAACCGGTCGATATCGAAGGGTGCCTTGTCATGCGCACCCCGTACCGGCAGATCGAGGGATCGCAGGCGATCCCCGGCGCCGTCAAGGCTCCGAAGGAGTCCTGGTCGATTGCTGCAAGACGACGACGCTATCGGAACTCTGCGGAGCGAGCGCTAGGTCGGCAGTGAAGGCAAACGCAGTCTGGTAGGGTGCCTCGTCGTTGGGATTCCAAGGATCCGCAAGT # Right flank : GTGTGCTTGAGGTGGCGTGACCGGGTCATGAGTCCGGGACGCCTGGACCGGTGCCCACCTGGACCTCATCAAGCGGGAGGTCGGCTGCGTGGACGCCTCCGTTGTGGCCGACCCGGCCGCGAAGGAGCCCACCGCCACGGTTGAGAAGGTCGCCGAGGCGAGGGAGAGCTGACCTAGCCGCCGAACGGGCCGCGTCGTGGGGCCGGCCATACCGATGAGCTCGGTCTGGCCGGCCCCACTCCTGCATCCAGGTCCGAGAGACGAGTTGGGGTTCTCCCGCCCCAGTCCAGTGATGTCATCGTGGCGATGAGCTGCCGGGAGGGGCGCTGCGCACGGCGACGCGGAGCCGATCCGACACGCCGGTAGGTTAACTTTCCTATTACCTGAGGTGTGAGGCAGAATAATCCCGTTGCTCGGCCACCAGGACCTGGTTGAGCGATGGTGCTCCTCCTCCCGCGGTTCGCCTCTCCCATCTCCCGGTCAGCTTGCCTTCTACCGCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1357226-1357911 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI391968.1 Actinomyces viscosus C505 supercont2.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1357226 37 100.0 38 ..................................... TCCATTGGAGTCTCCCAGTGGTAGTAAGTGCTTCTGCT 1357301 37 100.0 35 ..................................... TGCCCTACGACGGGCGTCAGACTGATTTCCAGCCA 1357373 37 100.0 35 ..................................... TGTTGCGGCGTTCCGGAGCCTGGCCGCTGACTTGG 1357445 37 100.0 38 ..................................... GTACATGCCGGACACGACATGATTCTCACCTCCTCTCG 1357520 37 100.0 35 ..................................... ACGGGAACGTGTACGACATGTCGTAACACGTCCAT 1357592 37 100.0 34 ..................................... TTTACGCTGGAGCGACCACTTGCAACTACTGACA 1357663 37 100.0 34 ..................................... ATGGCCTCGGCAAGTGTCATATCCTTTTCTCTTT 1357734 37 100.0 33 ..................................... GGACAATTGAGAAACCCATCTCTGTCTCCTCGA 1357804 37 100.0 36 ..................................... TTAGAGTAGCGAACCCGCACGTCGTTGACAGCAGTC 1357877 35 81.1 0 .....................G...--A.C.A.T... | ========== ====== ====== ====== ===================================== ====================================== ================== 10 37 98.1 35 GTCAGAAAGCACCCAGCACCACAAGGTGCATTAAGAC # Left flank : GGCCGGGCGCATCGAAGCGGACGAATACGGTGGCGGGCACTCGACGGGGCTCCTTTGCGGCGTGATGTGTGGTGGGTGCGGCAGTGGAGGCCGACGGCGGCGCCGGCTGGTGACGGGAGGCCGGCGCAAGGCCGTCTACCTCTATCTTTCTGACGACACTACCGGAGGGGAGGCGGCCTGTACGGGGAGTTCGAGAGGTCGACGTTCTTCAGCATCGAGGGCCAGGAGGAGGCGGAGAGGACGAGAGCCGGCGGCGCGCCGGCCGAGCCACGGAAGCACAATGTGTCGACAGTCACAGCTGGGAACGTCGATCTTTTGGCTTGACGTCGTTGGAAGCTGGTGGCTGAAGGTGCCTGAGGTGGCGTCGGTGGCGCTTGGCGTCAGGACAACGAAAAGTGGTTAAATAGGGGCACTGCTGGCCGGTCCCGCGGGGTGCTTGCGGAGCCGGTGGCGCTCCAGCCCCTGGAAATGGCGCAACGACGCCGCTCCCAGAGGCAGGG # Right flank : CGGGACTTACAAGTCCATCCTCACCTCCTTAACGAACTGAGCGACCAGGCGACTCGACGGAGGAAGAGCCCTTGACGCCAAGTCCAGGGCCCGACCTCTCCGCCACCACACCAGGATGTGCCCGCAGTCACAGGCGAGAATGTCGACCTTTTGGCTTGACGTCGTTGGAAGTTGGTGGCTGAAGGTGCCTGAGGGGGCGTCGGTGGCGCTTGGCGTCAGGACGCCGAAAGGTGGTTAAATAGGAGCAGTGCTGGCCGGTCCCGCGGGGTGCTTGGGGAGCCGGTGGCGCTCCAGCCCCTGGAAGTGGCGCAACGACGCCGTTCCCAGAGGCAGGGGGGGGCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGACGAGGTCCTCGCTCGCGTAGAGCGCATCGCGGATTTCGCGGCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGACTGCTTCCGACTTCGCCACGAGAGGCATCAGCTTGATGGCAGAAAGCACCC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCCAGCACCACAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [14,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 3 1358249-1358865 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI391968.1 Actinomyces viscosus C505 supercont2.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1358249 37 100.0 38 ..................................... GAGGTCCTCGCTCGCGTAGAGCGCATCGCGGATTTCGC 1358324 37 100.0 36 ..................................... TGCTTCCGACTTCGCCACGAGAGGCATCAGCTTGAT 1358397 37 97.3 33 ...........................A......... ACTGACTTGGAATATACCGTCGTCTGTAGTTGT 1358467 37 97.3 36 ..........G.......................... CTTCCATTCTTATCCATGAAGTTGACGTCGTGCGGG T [1358469] 1358541 37 100.0 36 ..................................... ATTTACCCTGTTTGGCTGCTGCTTGAGCCGCCATAA T [1358543] 1358615 37 97.3 34 .T................................... GGAATCGAACCTGCTACGAGAGCCCTCATATGCC 1358686 37 86.5 33 .T.G........T.....T.......C.......... GTCGGCTCCGGTGTTGGCGTCACCGATGGTGTT 1358756 37 97.3 35 .....................C............... CCAGCCTGTCCGGCTGGCGCGGGGCAAACGAATTC T [1358758] 1358829 37 94.6 0 .T................................A.. | ========== ====== ====== ====== ===================================== ====================================== ================== 9 37 96.7 35 GGCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Left flank : GCACCACAAGGTGCATTAAGACGGACAATTGAGAAACCCATCTCTGTCTCCTCGAGTCAGAAAGCACCCAGCACCACAAGGTGCATTAAGACTTAGAGTAGCGAACCCGCACGTCGTTGACAGCAGTCGTCAGAAAGCACCCAGCACCAGAAGACCTAATGACGGGACTTACAAGTCCATCCTCACCTCCTTAACGAACTGAGCGACCAGGCGACTCGACGGAGGAAGAGCCCTTGACGCCAAGTCCAGGGCCCGACCTCTCCGCCACCACACCAGGATGTGCCCGCAGTCACAGGCGAGAATGTCGACCTTTTGGCTTGACGTCGTTGGAAGTTGGTGGCTGAAGGTGCCTGAGGGGGCGTCGGTGGCGCTTGGCGTCAGGACGCCGAAAGGTGGTTAAATAGGAGCAGTGCTGGCCGGTCCCGCGGGGTGCTTGGGGAGCCGGTGGCGCTCCAGCCCCTGGAAGTGGCGCAACGACGCCGTTCCCAGAGGCAGGGGGG # Right flank : CGTGCACATGGCTATATGTCCGGGCCACCACAGATCACCAACCTCCATACTTCACCACCACATATTTCGATACCCTGTCCTCAGAGCCTCTTCACGTTCCCGCCCCTGAAAGGCCGCAATGATGCGTCCAGACCCGCCATTACCACCACCATCGTCATCGACACCACCACCCCCATCCCGCCCGCACCGTCGTCGCCGTTCCGATCGCGCAAAACCGGGCCAGCACCTCGGGGAGGACATTCACCCGCTCCAACACGCCGCGGGCTTTACGTCGCCCGAGTCGGGCACCGGCACCCCGTTCGAGCGCATCAGCTCCCGCGAGGGCCTGGAGGGAGGCTGGCGCATGGTCCTCGCCAAGGACGCCTCCGACGGCATCCTGCAGCGCAAGACCAAGGAGTTCGCCGAGCATCTCGATGACTTCCTCACCGAGCTCTCCGAGTCCCTGCGCTCAGGAACCTACGAACCCGACCCGCTCCTGAGCTTCGGCATCCCCAAGGACA # Questionable array : NO Score: 2.69 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [14,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 4 1375033-1375651 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI391968.1 Actinomyces viscosus C505 supercont2.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1375033 37 100.0 36 ..................................... AAGAATCATCCTGTCATAAAGATACTCTGAGCAGCA 1375106 37 100.0 36 ..................................... AGTAATCTCGTTCGCAGTGAGCATGTTGCTTCCCTT 1375179 37 100.0 37 ..................................... TAGTGATTGCCAAGCGTGAGACGGTCAGCAACAGCAC 1375253 37 100.0 35 ..................................... ATTCTCTGCCGATTGCTCAGCCTCGTACTTAGCGA 1375325 37 91.9 34 ..........G....A................G.... AATGAGCTCAACCTCCGCAATGCCTTCATCTATT 1375396 37 94.6 36 .C.........T......................... AATAGACCGATCGCCATCACTATAGTCAATAGTGGC 1375469 37 100.0 36 ..................................... GTTTCCAGGGCGCCGGCGGTGTTGGCTTCGGTCCAT 1375542 37 97.3 36 ........................A............ CTCAACGCGAGGTTGATGACGGAGCGGGGTTTCCGC 1375615 37 70.3 0 ..............C..GTT......CCT...G.CGG | ========== ====== ====== ====== ===================================== ===================================== ================== 9 37 94.9 36 GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Left flank : ATCGCCTTGGCGGTCCTGACCTTCATAGGCCTGCCGCTGAGCGTGTTCCTGGAGATCTGGTCCAACTGGGAGGCCGCCAAGGGTATCGCGGTCCGCCACCAACACATCGGTGGCTGGGACGCAGGATGGGGCTGGATTCTTGGCTTCGGCCTTTTCGGGTCACTCCTCATCGGCGGTGGGATCTGGCTGCTCGTTGACAAGGTCGGCGGCCGGGTGGCTCGGCGTGGGAAACGCTCCTGACGTCGAGTCCAGAGCCCGGCTCCATCTCCACCGCAGTAGGTTGTGGCCGCAGTCACAGGACGGAACGTCGACCTTTTGGCTTGACGTCGTTGGAAGTTGGTGGCTGGAGGCGCCCAAGGGGGCGTCGGTGGCGCTTGGCGTCAGGACGCCGAAAAGTGGTTAAATAGGGGCAGTGCTGGCCGGTCCCGCGGGGTGCTTGCGGAGCCGGTGGCGCTCCAGCCCCTGGAAACGGCGCAACGACGCCACTCCGAGAGGCAGGG # Right flank : GAACTTACAGTCCATCTTCATCTCCTTAACGAGCTGGGCGGCCAGGCGGCTCGGCGGGGGAAAGGCTCCTGACGCCGAGTCCAGGGACCGGTTTCACCTCCACCACACCAGAATGTGCCCGCAGTCACAGGCGGGAACGTCGACCTTTTGGCTTGACGTCGTTGGAAGCTGGTGGCTGAAGGTGCCTGAGGGGGCCTCGGTGGCGCTTGGCGTCAGGACGCCGAAAGGTGGTTAAATAGGGGCGGTACTGGCCGGTCCCGCGGGGTGCTTGCGGAGCCGGTGGCGCTCCAGCCCCTGGAAACGGCGCAACGACGCCACTCCGAGAGGCAGGGGTCAGAAAGCACCCAGCACCACAAGGTGCATTAAGACTTGTAATAAGTGCCCATGGCACTTCCTTTCTCCTGTCAGAAAGCACCCAGCACCACAAGGTGCATTAAGACTCACGGAGGACTGCTACAGGGATCAGCTGAGCCATTGTCAGAAAGCACCCAGCACCACAA # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [14,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 5 1375983-1376896 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI391968.1 Actinomyces viscosus C505 supercont2.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1375983 37 97.3 34 .....................C............... TTGTAATAAGTGCCCATGGCACTTCCTTTCTCCT 1376054 37 97.3 36 .....................C............... TCACGGAGGACTGCTACAGGGATCAGCTGAGCCATT 1376127 37 97.3 36 .....................C............... TCTCCGTTTACGAAGATCTGCGGGTCACGGGCGAGA 1376200 37 94.6 37 ............G........C............... ATTCGTTCAGCAATGGTGCTCATGACGTCTCCCTGTG 1376274 37 94.6 37 .....................C..T............ TACCAGCTAACTCTAAGTCCCTCACCAGGGCGTTCGA 1376348 37 100.0 34 ..................................... GATAGCCGTCTGTGCAGCACTGGGCGTTTTTGTG 1376419 37 100.0 36 ..................................... GTTTCCAGGGCGCCGGCGGTGTTGGCTTCGGTCCAT 1376492 37 97.3 36 ........................A............ CTCAACGCGAGGTTGATGACGGAGCGGGGTTTCCGA 1376565 37 100.0 38 ..................................... GTTCTCTGTGTACGTCATCCACCTGAATGACTCGACGA 1376640 37 100.0 37 ..................................... AGCGTAGACCGGCTACTACTGTAGCGCCGATTGCCGT 1376714 37 100.0 36 ..................................... ACAAGCCTTGCGGGCTTGTCTTCGCATAATATGCGA 1376787 37 97.3 36 .............A....................... CTTTTTGGTGGTTTGGAGTAGATATACCGGCCACCA 1376860 37 78.4 0 ....A.....................CCT...G.CGG | ========== ====== ====== ====== ===================================== ====================================== ================== 13 37 96.5 36 GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Left flank : AGCACCAGAAGGTGCATTAAGACGTTTCCAGGGCGCCGGCGGTGTTGGCTTCGGTCCATGTCAGAAAGCACCCAGCACCAGAAAGTGCATTAAGACCTCAACGCGAGGTTGATGACGGAGCGGGGTTTCCGCGTCAGAAAGCACCCCGCGTTAGAAGGCCTATTGACGGAACTTACAGTCCATCTTCATCTCCTTAACGAGCTGGGCGGCCAGGCGGCTCGGCGGGGGAAAGGCTCCTGACGCCGAGTCCAGGGACCGGTTTCACCTCCACCACACCAGAATGTGCCCGCAGTCACAGGCGGGAACGTCGACCTTTTGGCTTGACGTCGTTGGAAGCTGGTGGCTGAAGGTGCCTGAGGGGGCCTCGGTGGCGCTTGGCGTCAGGACGCCGAAAGGTGGTTAAATAGGGGCGGTACTGGCCGGTCCCGCGGGGTGCTTGCGGAGCCGGTGGCGCTCCAGCCCCTGGAAACGGCGCAACGACGCCACTCCGAGAGGCAGGG # Right flank : GAGTTTGCCGTGCGGTGGTTGCCAACAGCGCTGGAATACGGCCAGTCCGACCGTCAGCCTCTTGAACAGGCCCTCCGAGTCGCCCCGAACCACCCCGCCACCACGGGCGCCGTCCCCCTCGACGGCAACCAAGGCCTCCACCCCAGGCGGATTCGTGCCAGGTGAGCTCGCGCGATTCCAGGAAACGTCACACAGCCGAAACGCCTCTACCGCAGGAGCCGACCAAGCAGACGCACACAAAAGCGGCGGCACCGAGAAACTCGGCAGCCGCCCACTCACGCCCATTCGCCACCCGCCCACGAGCGGGCAGGCAGTCAGGCGACCATGCGGCCGGGCCGACAGCCCAGCCAAGCCGCCCCGCGCGCCCCCCCCGCTTCAGGCGCGGCGCAGGCGCAGGACGATGAGGCCGGCAGAGAGCAGGATCGCGGCCACGGACAGCACGCCGATCGCCACACCCGTCACCGGCAGCCACCGCTCCCGCACACTCTGGGCCGAAGGCC # Questionable array : NO Score: 2.70 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : GTCAGAAAGCACCCAGCACCACAAGGTGCATTAAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [14,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA //