Array 1 3706-2812 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXWU01000015.1 Staphylococcus hyicus strain CCUG 6509 CCUG6509_c15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 3705 36 100.0 30 .................................... TTAGGGTCCCAATAAATCATTTGACCTTTA 3639 36 100.0 30 .................................... TTTAGCAACTTTTTTATAACTATCACCATT 3573 36 100.0 30 .................................... GGTAAAACAACGTACAAGTGAATTTGATAG 3507 36 100.0 30 .................................... CGCTAAAGAGGCACTCTCAACTACTATCCG 3441 36 100.0 31 .................................... TGATGCCCCGGTCAAGCGTTTTTTGTTTGCT 3374 36 100.0 30 .................................... AAGATGGTTTAATAGCAGTATGGAATGGCA 3308 36 100.0 30 .................................... AACTTTGACGTACTTCAACAATATTTTACT 3242 36 100.0 30 .................................... TTGATAACTTCGGTTTAGGTGATTTTATCA 3176 36 100.0 30 .................................... ATTTTCTATGCATTACCTTTATGAAGGGGT 3110 36 100.0 30 .................................... TTCATGTCGCCTGTGGGCTTTGTTAAGTTA 3044 36 100.0 29 .................................... TTTGGTAGCCATTTACTTCACAAGAGAGG 2979 36 97.2 30 ..............A..................... GAATATGTAGGTTCTAATATACTGTCACCT 2913 36 100.0 30 .................................... AGAAATACTTGTAAACACAGCAAGCCTTGT 2847 36 88.9 0 ...................A...T....G......A | ========== ====== ====== ====== ==================================== =============================== ================== 14 36 99.0 30 GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC # Left flank : GGCGTTCACGATGTACAATAACGCCATCTTCATTTTCTTTTTCATTATTTTCAGTGTGAGCTGCAGCTATAGTTAAAATGTTGTTATCAAAATCAACGTGAATGTCTGATTTTGCCATACCTGGAAGTTCAGCGCTGACAACATATGCATCTTCACGTTCAGAAATATCTGTTTTAAAAGCTTGAGATAGCATTAAACCTTGCCCAAAATCTTTGAAAAGATCACTCGAGTTCATATCAAAAATAGAATGATTAAATGGTTTTAATTGGAATGCCATAAAGCATCGCTCCTTTATATTTTAGAATGTCGCAAATATCAAGAAACTGAACTGGTAAAGGTCACATCTAATCCTTTACAATCTTATTATACGACAAAGGTCAAAGTTAGTCAAGGTTAAAGTGGTGTGATTGATGTAAATTGAAATTTATCCAAAATACATAAAGATCAGTGATATCAATGGATTAGACAATCTTAAAAGTTATAGTATACTGTAGCTAGAG # Right flank : AAAGAATAGAATTGGCGTTGTGCGCAGATAGCTTAGTACTTTGTGATTTTAGGTATTTTTATAAGTGTTCTATACATGAAATATGTATGCGATCCACTTATTTTAGGGGTAACCTCATAAAATTGTTTAACTCAAAGAAACTAACGTTGTTTAGATAGAAGTTATAACACTCACTCCACAAAAATATCAGAAAATTCTTGACTCAAATGGATCTTATGATAAAATAAATTTACAAGTACTTATTTGTGCTTATACCTAAAATTACAGAATCTACTAAAACAAGACTATATGTCGTGTTTATCCCACTAATTTATTAGTGGGAATTTTTTTGTTCTTCTTTTATAATAGAATTTAAAAGGGAGGGCAATGTATAAATGAATAATTATATACTAGGACTCGATATAGGTATTACCTCAGTTGGATACGGTATTGTAGATAGCGATACGCGTGAAATTAAAGATGCTGGGGTACGTTTATTTCCAGAAGCGAATGTAGACAAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //