Array 1 931128-932741 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP075106.1 Salmonella enterica strain CFSAN064276 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 931128 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 931189 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 931250 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 931311 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 931372 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 931433 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 931494 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 931555 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 931616 29 100.0 32 ............................. CGCGAGCAATCCCATCTGACGTTCCGGAGACA 931677 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 931738 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 931799 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 931860 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 931921 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 931982 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 932043 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 932104 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 932165 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 932226 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 932287 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 932348 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 932409 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 932470 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 932531 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 932592 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 932653 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 932714 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //