Array 1 523737-524353 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPVQ010000001.1 Campylobacter concisus isolate 2013-39845, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 523737 30 100.0 36 .............................. CTTATCTTGATAAGCAGTTTTGCTCGGTAGATTTTT 523803 30 100.0 37 .............................. TTGATGAGATAGAGGGTAGCGACGATTGGTTTGACAC 523870 30 100.0 34 .............................. TTGCAAAATTGTATTGTTGTTCCATGCGTCGATA 523934 30 100.0 34 .............................. GGCGACTTTGTAAAAACTCTTTGTGATAGTGAGG 523998 30 96.7 37 ...............A.............. GGAGTTTATATCGTTAGAATGGACGACGTTGTTTATA 524065 30 100.0 33 .............................. AAAAACCAAAAGACAAAAAGGATGAGTGATGCT 524128 30 100.0 35 .............................. AAGGTTTTGGAAAACTACACTAACCAAACAGACGC 524193 30 96.7 34 ....T......................... GAAAAATGGAGCTACACAAGAAAACAAGGGGTAA 524257 30 100.0 37 .............................. TTTGACACGGAGGGCTAGCCCATATAAAATCAAAATC 524324 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 99.3 35 GTTTCAAACTCCAACGGAGTAAATTCTAAT # Left flank : TGATATTAAAAAAGCAAAAGAGATATTAAAGGATTATAGATGAAAGAAGAATTTACAAAATTTAATTTAGAAGACTACTTAACAACTGATGAATTAAGAAAAGAGTATTTAAATCAAGTTCTAGCTGATGGCGATATTGAAGAATTTAAAAGAGCATTATTTTATATAGCAAAGTCAAAAGGCATTGAAAACGTTGCAAAGAAAGCAAATTTAAATAGAGAAAGCTTTTATAAGATGTTTAAAGAGAATTCAAAGCCTAGATTTGAAAGTATATTTAAGGTTGTTAATGCTCTTGATATTAAGCTGGTTTATGCTTAGTCTATTTCATTATTATTTCTAGTTTCTTTTTTGCTGTATTGGCTGGGGTTTTGGTTTTTCGAAGTATCTGCATAAAACAATATTATCGTTTGTTTGATACATCTTTGCAAGATAGCAATTGTTGTCTATTTGATCTATTATTTAAATCTCTTCTATGAAAATTAAATCGTCGCTTATGTGTT # Right flank : TCGCACCAAAAAGCCTATTTTATAGGCATTCTAGTGCAAGAAGTCTATATTTTTTCGCCTTAAATTTGACTAAAATTTAGCCATGTGCAAATACGCCAAGCCCCAAATTTCAAGCTTTTTAAAATCTTATAAAACGCTTTATTAAAATGCGATTTCACTCCCACCTAAAGCCTTCATAAAGCGCGTCCTCGCAGATACACTTTTTAAGCTTATTTGCTTCGCGGCGGATCACCTGCCTCCACGTTAGCTCCCTACCGCCCACCGTGAGCGTCTCGCAAAGGCGTGAGATCATCTTTAGCTCGATCTTTTGCACGGCGTCATTGCTAAATTTTATCCTGCCAGCGTCCGTTTGGAAGTCCTTTGCAGTGATCTCTTTTTTATTTAGCATATTAAATATCAGCGTATCGCCCAAGATCGGCTTAAAAATCTCCGCAAGATCGAGGTGAAGGCTTAGCGCGCGGTAGTTTGGCTCGTGCAAAAAGCCGATGCGAGGATCAAGC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAACTCCAACGGAGTAAATTCTAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 3788-6877 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPVQ010000005.1 Campylobacter concisus isolate 2013-39845, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 3788 37 100.0 36 ..................................... TTCTTGAACAAAGTTCATTTTTTCTCCTTGTTAAAA 3861 37 100.0 37 ..................................... GCTTCGGTTCTGACATCATTATCGTCATTACCATCAA 3935 37 100.0 42 ..................................... GATGTATATGGTAAAAGGACTAGTTAAAATTATTTAACTAGA 4014 37 100.0 34 ..................................... CTGTCCTCGTATATTTACGAAGAATGAAACATCA 4085 37 100.0 38 ..................................... ACCCTCGGATTCTATTATTTCTTTGATGACATCATAGT 4160 37 100.0 42 ..................................... AATAGTTCTAGGTTTAATCCCTTAGCCTCAGCTGAAGCTAAG 4239 37 100.0 39 ..................................... AGTAACCCTCTTTGTTGTGATAATCGCTAGCGTCTTTCC 4315 37 100.0 43 ..................................... TATTCTTTATCGTCTGACTTGCTTTGTCTTTGTTTGCAATTTT 4395 37 100.0 39 ..................................... CTTTTCTTGTAGTTAATTCTTTTAAAAGCTCGTCAAACT 4471 37 100.0 36 ..................................... CATCACACCATCCTCTATTCCTATCTGTTTCTACCA 4544 37 100.0 42 ..................................... TAAAGACTGCTCCCCACTGAGCAATGTCTGTGTGGACGTGCT 4623 37 100.0 36 ..................................... CTTATCTCTTTTTCGAAGGTAACTATATTACCTTCT 4696 37 100.0 44 ..................................... GGGCTCTATGATAGTGCGGGGCATGATCTATAAGACCACCACTC 4777 37 100.0 34 ..................................... TCTTCATGTCTTCTCCTTTAAAAAAAATAAATAT 4848 37 100.0 41 ..................................... CTTTTATCACGAAGCTCGTAACGGACCCAGCAGTTATCTGG 4926 37 100.0 40 ..................................... GTTGTCGTCGTCACCTAAAAAGTTCAATTTGAACTCCTTT 5003 37 97.3 35 ...........A......................... TCCTTCTTCAGGAGAAACATTTTTAACAAGAAAAT 5075 37 97.3 36 ...........A......................... TCTTTTGCAATTTTTCGTTAATTGCTGCCATTTTTT 5148 37 97.3 40 ...........A......................... GCTTACTAGCTAGACTAGTTATAGCCTCTTCTAGACCATC 5225 37 97.3 38 ...........A......................... ATAAAATTAGACATTGTAATCTCCTTGTAAAAAAATAA 5300 37 97.3 38 ...........A......................... ACTTTGTGGTGCACAGTATTGTCTTTCCAAGGCGTTTT 5375 37 94.6 42 ...........A......T.................. AATATTTGCCGTCAATTAGTGCCATGTCATAATATGACACAT 5454 37 94.6 41 ...........A......T.................. AATGATAATATCTCACCGCCTTCTTCTGTATATCCATTTAA 5532 37 94.6 40 ...........A......T.................. TTACTAGCCACCTGTGCAGTAACTAATTGATTCTTAGCTA 5609 37 94.6 43 ...........A......T.................. TGCTTACTAAAATCATCTTCTGTTATATCTATAAGCTTGTCTG 5689 37 94.6 43 ...........A......T.................. ATTTCTTCTAATGTTTCCTCAACAAAACTCATTTTACTCTCCT 5769 37 91.9 38 ..CT.......A......................... AACCTTGTAATTTTTTTTATTGTTAAATATTGTAGTGC 5844 37 91.9 38 ..CT.......A......................... TTTATTTACCACTGCCTTAACACTACTTCCTGCATTAC 5919 37 100.0 40 ..................................... GTTTTAACCTTACTAAGACTTGAACAATTAATTTCGACAT 5996 37 86.5 40 ..CT.......A........G....A........... ATCATAGTTGGAGCTAAGGTATATCTATCTTGATCCTTAT 6073 37 91.9 39 ..CT.......A......................... AAACCTGCATTTTCCATGGAATGCTCCTTATAAATTTTG 6149 37 91.9 44 ..CT.......A......................... CCTTCTCTAGAGATTTCTGATTCCAGATATTTTTCTGGGGACAA 6230 37 91.9 43 ..CT.......A......................... ACCGTCCATATAGACAGAATCCCAAATTTCTACACTTGGGTTT 6310 37 89.2 35 ..CT.......A......A.................. CATCTTACATATTTGTTACGGTAGATCTGGATAGC 6382 37 91.9 40 ..CT.......A......................... GCTGTAAGTGGCGTCTGTGCCAGTACCATTTGCATTTGGG 6459 37 91.9 43 ..CT.......A......................... TTATTTACGTTGTCAAATTCTCCAGCAGCAAAAGTTACACCTA 6539 37 94.6 35 ...........A.....T................... TCTATATATGGCTTCATTTCGCCAAAACCAGTAAC 6611 37 91.9 42 ..CC..............A.................. ATTTTCATAAACAGCCCAACAATTATTCTCTGCATGACATAC 6690 37 97.3 35 ...........A......................... TCTATATATGGCTTCATTTCGCCAAAACCAGTAAC 6762 37 91.9 42 ..CC..............A.................. TATGCCTGCGGTCATCATATTTGATCCAGCCACCTTCAATAT 6841 37 94.6 0 ...........A........................T | ========== ====== ====== ====== ===================================== ============================================ ================== 41 37 96.3 39 ATTAGATACAATTTTCCCCGATCTAGGGGATTGAAAC # Left flank : GAGCTGTATGGCTAAAAGCGAGACCTTAGGCGAGGGCAAGATATTTTGCCCAAGCGACACCTATGTCTAAGCGCCTTTTTTAGGGATTTGATTTTCGAACTTTTGAAAATTTCAAAACTCCCTTTTTACCGCACTTTTATATTTTATTAAGTTTCAAAATCTTCGAAAATCTCAAATTTCTCTATCCCAAAAAAGACTTTCTCGAACTTTTGCATTTTTGCACTTTTTAAAGTTGCCTTTTTTAGGCACTTAGCATAGAGCCCAAATTTGCCAAAATTCGAAAATCACACAAATTTTCACTTTTCATTTTAGATTTTCGAACTTTTTAGCTTTCATAAATGCCCTTAAATTCGCTATCTTAAGCTATCTATAAGCAAAAGAGTGCGAATTTGAAAAATTTTTTTAGCCACATTTTCGAACATTTTGCCATTTGTGATATAATGCCGGCAAAGAGTAGTTCTTTTAAAACTCATTGTTAATTTACAATCGTTTTTTAGGCT # Right flank : TAGACATATCTATCGAGCATAGTTCTCAAGCATTAATTCATAGATACATTTCATTTTAGTTATTTTTTAGTTGGTATATAAAAAAATAATCGCTAAATTGACTATATATGACAACGAAACTTTTTATAATTGCCTCCGAAGTTGATGCTAAAGCGTCAATAAAAAATTAAGGAGTTTTTATGAAAAAGATCGCATTATCTTTAATGGTTGCAGGAGTTGTAAGCTCTGCTTTTGCTAGTGAGGCTGCTAATCTAGCTAATATAGCACCTACTAATCACGACAAAGTTGCCATCGCGCTAGATACTTACTACAAAGGTACTGACATATGGGGCGCTTCATCTTTTGCTCTTGGCTTTGATGGTAAATATGGCTTAGTGCAAGCTGCTAATGGCGAGCTATACTTCCGCTTAGCAGGTCATGCTGGCGTTAGAAGCAAGGATGTGCATAGATTTCTCGAGATAGGTGGCGGACTTGGCTGGTCTCAAAAGCTATCTGAAAAT # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:0, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGATACAATTTTCCCCGATCTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.50,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //