Array 1 687064-686831 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039381.1 Ruminococcus bovis strain JE7A12 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 687063 33 100.0 33 ................................. CAACTAGGGGATAAGAATAATTATTGGTAACTT 686997 33 100.0 35 ................................. GGATATATGTCAGTAAACAAAATTGGATATAAAGA 686929 33 97.0 34 .............T................... AGTATCGTTATAAACAACAATACTACTGTCTACA 686862 32 78.8 0 .......A..TG.T...........G.A-.... | ========== ====== ====== ====== ================================= =================================== ================== 4 33 94.0 34 GTCACCACCCACACGGGTGGTGTGGATTGAAAT # Left flank : AGATGTGATGTAGGTGAAATACCCGGGAATAATTTAGAACGAATTGCACGATAAATAGAAGAAAAAGAAATCTTAATATTATGATTTAAATTCCATTTATCAGCTATTATTTCCGGAGACCAAAAGGAATGTAATTTATCAAATACATAATTATATATATCTGTGTATATGAGTAAATTATTTTTCTATGACAATCCTTTCTTCTTACTAAATATTTTACATGTGCGCCCCAAGGATGATAGTGTTTGCGTTTTTTACTAAAATTCCGTTTTAATTCTCTGCTGATTGTAGAAGGACTTCGTTCAAGTATTTTGCAATTTTTCTTATGCTATATCCTTTTTCGTAAAATTCTTGTAGACATTCTCTTTCAATTAGTGTAAGATGTGTATATGACAATATGATTACCTCCGTATTATGTTTGGTGTTGCAACTACATTTTACACGATGGTTTTCATATTGTCTATTTTTTTAGTGTTGCACTTGTTATTATAATCTAACCT # Right flank : AATTTTTGTAAAAAATTATAAAAATTTATAAAATGGTGCAAAAACAGTTGCCTTTTTTTCGGTTATATATGCAACAACCAAACAAAGAGAAAACAAAGAAAAACAATAACCTTTTAGTTTATGCTTATAGACTGAAAGGTTATTTTGTTGCAGAAAGTTAAAAGGTGAGCTAATGAAAAAGTCAAATGAATTTATGGAAATGTTGCCTAGATTATTACAGGCAATGAAAAATGTAAATGATGCCGGTTATGTTGGTGTTCTTTCCAAGGAAGGTGCTGACAAATTGTGTCACATTACAAAGACATTACAGAAAATTCTGAAAAATTCAAAAGGAATTTCAATATCGCAGAAACCCTATGTTATCTTTAATGCAGTAGGTATATTGGTGTCATTTGACGAAATTATAATGAACAAAGAACAGATTAGTTCATTTGTATCATTATTAGGAAAGTATCAGCTAGATCCGGAACAGATACCATTAGATATGGTAAGTTTTCATG # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:0, 3:3, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCACCCACACGGGTGGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.80,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : NA // Array 2 693085-688178 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039381.1 Ruminococcus bovis strain JE7A12 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 693084 33 100.0 35 ................................. TAGGGTACTGATTTTTATTGCATAAGTCGAAAAAC 693016 33 100.0 35 ................................. TTAGTATGTCTTATCAATCCTTGATAACCATTGTC 692948 33 100.0 37 ................................. ACTGGTTCACCAACGATTAAAACCTCATCATCATCAG 692878 33 100.0 35 ................................. CTTATTTAGAGGGTATGAAAGGTACTGAGCCTGTT 692810 33 100.0 33 ................................. TAGAATGATACAAGATTGTTCAGACCTAAAGTA 692744 33 100.0 34 ................................. ACTGTGTACCTGTTCTCTGATTTTATCAGTCATA 692677 33 100.0 35 ................................. TGGTAGTTCAAGAGTTGGTAAATGTTTATTTGTTG 692609 33 100.0 35 ................................. ACAACAACAAGCATTGCAAATGTAGAAAATGAAGA 692541 33 100.0 33 ................................. CAAGAGGAAGCAAAGGAAATTTATATTAGTTCA 692475 33 100.0 35 ................................. ATCAAGTTATGCGTAAAGAGGTGCTAGGCAACAAT 692407 33 100.0 34 ................................. CGTCCCATTCCTATGCGATTTTTGTTTTTTTTGA 692340 33 100.0 34 ................................. TGATTATCGTTAGGCAATATAGATGCCTTCTGCA 692273 33 100.0 34 ................................. CCATTAGAACAGAGGACAAATGTTATTTTGAACA 692206 33 100.0 34 ................................. CGTGTTCCGAGATTTTCAAAAAAAACAAAAATCG 692139 33 100.0 34 ................................. TTGTTTGTGGTGTAGACGAACGACGAGTCATTCA 692072 33 100.0 34 ................................. AAGCATAGCGGCTCTATCGTATTTAACGCCTTTC 692005 33 100.0 34 ................................. GTCCTCATAGCCATTTTCAACCTCACACATACAA 691938 33 100.0 33 ................................. CATATGCAACTGCTCCCTTAATTCGTCATCCAT 691872 33 100.0 35 ................................. TTGCCGTTCTTGTCGGTCAAGCCTGTGTATTGTCC 691804 33 100.0 35 ................................. GTATCGTAATAGCTTTTACAGCAGTGTTGATAAAG 691736 33 100.0 35 ................................. CTTCGGCACCAGATGGACTTTCTGTTACAGCTGTG 691668 33 100.0 34 ................................. GGCAAGAACGATAAAGGCAATATCCTTAAACACG 691601 33 100.0 34 ................................. AAGTATCGAAGAAACACATTGGCTATATAAACTT 691534 33 100.0 36 ................................. TTTATGTACCTTGATAAAGACAAAGGATATTATGAT 691465 33 100.0 34 ................................. ACCTCTGCGAATAGAAATTACGAAAATAAAACCA 691398 33 100.0 33 ................................. CTTATTACGAAGTGCCAACTACGAGAAGTCCTT 691332 33 100.0 33 ................................. CTACTATTTATTTCGTGGTGCACACACAAGCAC 691266 33 100.0 35 ................................. CTTCAATGTTGTTAAGGGGTTGACCGATAAACTTA 691198 33 100.0 35 ................................. TTTAACAGCTGATGATATTGCTCGTAAAGTTGTTG 691130 33 100.0 34 ................................. CGAGCAAATACCGATGCTTTCTTTAGTTATGACA 691063 33 100.0 35 ................................. GAGTGAAAGCGGCATTTTCGAACAGTCCCGGCAGT 690995 33 100.0 36 ................................. TTCAATACAAGTTACAATACCATTTATTTCGGTAGC 690926 33 100.0 34 ................................. TCAAAGTATCGGCATACAAACTCTGCTTGTTTTC 690859 33 100.0 35 ................................. GTGGTGACTTTGCCTTTGACGATATTTTCGGCACG 690791 33 100.0 34 ................................. TTTGTATGGGATTGAAACACACTCTTTGTATTTT 690724 33 100.0 34 ................................. ACCTCGCTTGATGTAGTGACGAACTGCGTATCTC 690657 33 100.0 35 ................................. CCTCTTGCGACATCATTATAATACCATAGTAATTT 690589 33 100.0 33 ................................. TATACAATCAAATCAACAAATAAAGAAAGGCGA 690523 33 100.0 32 ................................. GAGAGGGAAGAAGAATGAAGAAGAATATACAA 690458 33 100.0 36 ................................. TTAACAGCAGAACATTACAGCAACAAAGAACAATGC 690389 33 100.0 35 ................................. CCACTCTGATAATGTTATCCAACTGCCCTTTTTAG 690321 33 100.0 35 ................................. CTAACTGCTGATGAATTTCTTTCCAGCTTTCACCT 690253 33 100.0 36 ................................. ACCATCTACAGTTATGCGTGATGAAGTCGGACGATT 690184 33 100.0 33 ................................. ACCTTTAATTTCAAGCGGTTCAGCTAACTTGTT 690118 33 100.0 35 ................................. AAGCATTAACAATTCAACACCTTCTAGCGCGGTTT 690050 33 100.0 37 ................................. AACACCTCTTGCTGATATAGAAACTTTGAAATCTGAT 689980 33 100.0 36 ................................. ACAGAATCGAATGGCGAATGATAGGTGGAAATCCTG 689911 33 100.0 34 ................................. TATTACCATATGACGATAGTGCTTTGGATATTGC 689844 33 100.0 36 ................................. TTAATCTGCATCAAAATGGTGGACCTTATGTGTACA 689775 33 100.0 35 ................................. TTAGGGTCAACTTTAGAAACGCTAGGACTACCGTT 689707 33 100.0 34 ................................. ACCTTGATTGGCTTGAAAATCTTGACTTATATCC 689640 33 100.0 36 ................................. TCCTTTACTGCTGTACCGTTTTATTTGATTTTGCCT 689571 33 100.0 35 ................................. AAGGCACGAGTATAAATATCTGCCTATATCATCAG 689503 33 100.0 35 ................................. TTTACCGAAGTGTTGATAATATCCACGAACGTACC 689435 33 100.0 36 ................................. TAGAAATGATAAGACTACTAGGGGACCATGGAAGTC 689366 33 100.0 35 ................................. TAAAACGATTACAACAACGTTATCAAAAGCCTTAG 689298 33 100.0 35 ................................. ACCACTGATGGAGGTTGTAGAAACTACAGATAGAG 689230 33 100.0 36 ................................. TTTAACCTCCTTTATTCAAATTATGAAGATTTCTTT 689161 33 100.0 35 ................................. TTTACCGAAGTGTTGATAATATCCACGAACGTACC 689093 33 100.0 34 ................................. ACTTTTGAAATTGGTGAACAAGATTACAATAATT 689026 33 100.0 35 ................................. GCTTGTTAGTGGTATTACTCAATCAATCCCAAAAT 688958 33 100.0 36 ................................. TAGAAATGATAAGACTACTAGGGGACCATGGAAGTC 688889 33 100.0 34 ................................. TCTAATTGATTAACGGATTGATGATATAAATTAT 688822 33 100.0 35 ................................. ACCACTGATGGAGGTTGTAGAAACTACAGATAGAG 688754 33 100.0 36 ................................. CTTAACAGATATTAAACAATAAGAGGTGATAATATA 688685 33 100.0 35 ................................. ACTCTTTTTAACTCTCAAAGTGATAACATCATATG 688617 33 100.0 34 ................................. TTGACAACAAGCAGACACCTGCACCGCTACCGCT 688550 33 100.0 36 ................................. AACAGTGTACTTGATTATATTGTTGAAAATAGTAGC 688481 33 100.0 34 ................................. TCGTAACAAGAGAAGTGATAGATTTTGTCACTAT 688414 33 100.0 34 ................................. CGATTGTTGGCGAAGATGATATAAGACACTCTGG 688347 33 100.0 36 ................................. TCATACTAGTTTTTTACACCACGAAAAAAGCAAAAA 688278 33 97.0 35 .............C................... AAATTATGCAGATTTTTTGACTAATTTAACAAGGC 688210 33 97.0 0 .............C................... | ========== ====== ====== ====== ================================= ===================================== ================== 73 33 99.9 35 GTCACCACCCACATGGGTGGTGTGGATTGAAAT # Left flank : CGGTTATCCACCATTTATGTGGAAGTAGGTGTTACTATGTTAGTGTTAATTACTTATGATGTATCTACCGAAACACCTGAAGGAAGAAAGCGCTTGAGAAAAGTTGCTAAAGAATGTGTAAATTACGGAAAGCGTGTTCAAAATTCAGTTTTTGAATGTATTATGGATTCAGCAAAATGTTTTGAAGTTAAGGAAAAATTAGTGAAAATAATAGATAAGGATGAAGACAGTATAAGGTTCTATTATTTAGGAAATAATTACAAAACTAAGGTTGAACATTTTGGTGTAAATAACAACAATGTTGATGTGGAGGGAGTGTTGCTTTTTTAGTGCGATAAGTAACCTTACATAAGAATGCTAAGGTATTCGCACTAAATTTAAAAAGAAAACAAAATATAGTGATGTAAGTTTTATTTAGAATTGGGTTATTACATAAATAAAAAAAGTGATAATTTACAATGAACGGAAACTAAATAAAAATACATTTGTTATATTTTGCT # Right flank : TTTAATCCTCTTGCCGTCTTTGTATTCAACAGTCTGCTTAGATTGTCAAACCAAGTGCAACACTTTGATTAAAATAGTCAATAGGTGAAAGAAGGTCTAAACATTTTCTAGGTCTATTATTAATTTTATCAAGGACTGCATCAAGTTGTGCTCTTGTGACTTTTCTGAAATCAGTACCTCTTGGAAAGAAAAATCTTAATAGTCCATTGATATTTTCATTTGAACCTCGTTGCCAAGGAGCATGAACATCTGCAAAATATATTTCTAAATCTAAATCTTTTTCAATATCAGCATATCCGTTAAATTCAGAACCATTATCTAAAGTTAATGTAAGTGGTTTGATTTTTAATGAAGCTTTTTCAAAAGCTTCTCTAAAAGCTGAATTAATTGATGAAATAGATTTATCTTTACAGGTAGCAGCTACAAGAAATCTTGATTTTCTATCAATAGCAGTAACAAGATAACCTTTTCCTACTGAACCGTAAATTGTATCTCCCTCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCACCCACATGGGTGGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.50,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 3 1642174-1643991 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039381.1 Ruminococcus bovis strain JE7A12 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1642174 36 100.0 30 .................................... AGGTTTGCTATTGCAGTTTTATAAGTGTTA 1642240 36 100.0 30 .................................... CCAGGCCTGAATGGGTATAGGATGGCTCGA 1642306 36 100.0 30 .................................... CCGTATCATCTGAATAATCAGTAGGTACTT 1642372 36 100.0 30 .................................... AATAAATACATAGCAAGTTTTTGTCAATGC 1642438 36 100.0 30 .................................... TCTTTGCAATTGGAGAAGAGAAAGAAAACT 1642504 36 100.0 30 .................................... GGAGAACTTTTTTTACTTTTTAAATTGTAA 1642570 36 100.0 30 .................................... CTATGTCGATTAATTAGATATACTCATCCA 1642636 36 100.0 30 .................................... TTGAGTGAAGCTAACCTTGAATGGGTTTGC 1642702 36 100.0 30 .................................... ACAGAATCAAACATTGCTGTCCATCCCTTT 1642768 36 100.0 30 .................................... TTGAATGAGAACAACCTTGAATGGGTTTGC 1642834 36 100.0 30 .................................... CGCTTCCGCATAAAGGGCATTTATACATAT 1642900 36 100.0 30 .................................... TGTTAATGATAGACGAGGCAACGCAGATAA 1642966 36 100.0 30 .................................... TACTGACCGTATGACAAGTTAGTACCGTTA 1643032 36 100.0 30 .................................... TGAATTGTCTTATAATCTATCTGGTGAACT 1643098 36 100.0 30 .................................... ATTAGAACAACGAAAAATGAAATTTAGCTT 1643164 36 100.0 30 .................................... TACTCTTGCAGACATACATTCTCTGACTTA 1643230 36 100.0 30 .................................... TTTCAAAGGTTACAAAGTCAATATCCTTGC 1643296 36 100.0 30 .................................... GATATATCATCAGATATTAATAGTATTGTA 1643362 36 100.0 30 .................................... TTGGTAAAGCACACTTCTTTATCGTCAATG 1643428 36 100.0 30 .................................... ACAACTGCAATTTTTAACGAGCTAACCCAA 1643494 36 100.0 30 .................................... AGGACAAGTTACTTGTCTTGTTTTTATATT 1643560 36 100.0 30 .................................... AATAAATAATTGTATAAATCAAGAGATTAA 1643626 36 100.0 30 .................................... GCACAAATTGCACTAAATAACAGAGAAACA 1643692 36 100.0 30 .................................... CATTTTGTTTTAGTGCTCATAGCTACTTAT 1643758 36 100.0 30 .................................... AGTTTACAACACGGAATTAGAAGTAAAAAG 1643824 36 100.0 30 .................................... CCACACAATCGAAGATATACAGAAAGCAAA 1643890 36 100.0 30 .................................... GTGGACCGACTTCCTTCAATGTTGTTAAGG 1643956 36 97.2 0 .........................A.......... | ========== ====== ====== ====== ==================================== ============================== ================== 28 36 99.9 30 ATTATATCATACCAAGAATAATTAGGGAACTATAAC # Left flank : AAAAGTTTATCTAGTTGGTATAATGATAAGAATAAATCTTTATTATTGCCACAGATTATTGATTTGGAACAACATACATATGAATAAATTTATGAGAATAATTGTATTTTTTGATTTACCTGTAAAAACAAAAAGACAGAGAACGGTTGCAACAAGATTTAGAAATTTTCTACTAAAAGATGGTTTTTTTATGGTGCAGTTTTCTGTGTATGCAAGAATTTGTAATGGCGTTGATGATGTTGAGAAACATAAATCAAGAATTAGAGATAATACTCCGGAAAATGGTTCTGTACGAATGTTAGTGATAACTGAAAAACAGTATGAAAGAATGGAAATTCTTATAGGTGATCTTGTAAATGAAGAAAAACAACAAGTATTTGAACAACTTTCTATTTTTTGATTTTTCTTGAGTTTCTGATTGTATTACTGTTAAAAATAATAATTTTTGCGCAAAGAAAACTCCCATAAACTTAGTGTTTATGGGAGTTTCTTTAGTCCCT # Right flank : CATAATAACATCAATGCTATTTAACAATGTTATTATATCATACCAATAACAATAACCAAAGTCCCCAATATGGGACTTATCTATTATAAAACACTATAATTTTTCTTTTTCTATTGTGTTTCTAAAAATAAGTATGATATAATGCATAATATACAGAAACAAATAATAATAACTAATTATTTTATATAAATTTAATTATTTAAGGAGGATATTATGGATTATCAAGAAATTATGAGAGATATTGCAAGTGGTTTAACCGGTGAAAATGAAAAAGATATACAGTACTTAATGGAACAAATGGAAAAGTACAAAGACCATGAACTTGGAAAAGAGATTATCAGGGCTTGTGGTAGGCTGATAAGTGGAATGTTGCCTGAAGAAAAGGTCAATGAATTAGCTAATGCTTTTGAAAAAGATAATGCAGAAATCGAAAATGAACTTGATGATTTGTTTTCTACTCTACAATCAGGTGATTATAATTTAGCACTTGGAAAAGTAGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATATCATACCAAGAATAATTAGGGAACTATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 4 2075977-2078709 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039381.1 Ruminococcus bovis strain JE7A12 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2075977 36 100.0 31 .................................... TTTATACAAGAAATTACAAGAAATGAGGTTG 2076044 36 100.0 29 .................................... CTATTAGCTCTGGTTTAGACTCCGTTAAA 2076109 36 100.0 30 .................................... AATCTCTTGCAAACTTATTCAAAAAGGAGG 2076175 36 100.0 30 .................................... TAAGAATTCAGCTGAAACATTTGTTGTATT 2076241 36 100.0 29 .................................... CTATAACGCAGTTATGAAAGTATTGGAGG 2076306 36 100.0 30 .................................... AAGTGTTTAACTTGTTGTTTAACAGTTAGT 2076372 36 100.0 30 .................................... GACTTGTCTTTATTCATCATCAAAAATATA 2076438 36 100.0 30 .................................... ACCTGACAAGACCAAATGTGGAAACCCTTG 2076504 36 100.0 29 .................................... AAAAAGTTTGGTTATTTAACAATAACCAA 2076569 36 100.0 30 .................................... GTAGTAATGTTTCTTTTAGGAAAACATATC 2076635 36 100.0 30 .................................... GTCTTTTTCAATTTGTTTTCCTCCTTGTAT 2076701 36 100.0 30 .................................... ATTAACGCTTATGCTGAAGCTATTGCAGCA 2076767 36 100.0 30 .................................... TTTAGAAATAGTGGAGCAGTAATGCTTCGT 2076833 36 100.0 30 .................................... TGAGGGTCAACCTCTCTTCCGTTGCTGTCA 2076899 36 100.0 30 .................................... CAGGCAAGGCGGCAGCTTTATAGCCAATTT 2076965 36 100.0 30 .................................... CTTTTCATCTCACCGCAGCCCTCACAGAAG 2077031 36 100.0 30 .................................... AGTGTTGACTTTATATAATGACGGCAGTAT 2077097 36 100.0 29 .................................... TCGTCAAGTAAGACAGAGTCATTATCACT 2077162 36 100.0 30 .................................... TGATAGCAACTTGAATCTATTGCTATTAGT 2077228 36 100.0 31 .................................... TATTAGCGCTCATGTAGTGGCTGAAAAGCCG 2077295 36 100.0 29 .................................... CTATACCTAAGAATGAAGGTGACTATCTA 2077360 36 100.0 29 .................................... CGATAGCAGATAATAGTTTTGTGCCAGTG 2077425 36 100.0 30 .................................... TCAGCCCAAAGTTTAAATGTATCGAGTAAA 2077491 36 100.0 30 .................................... AGGAGTAAATAAAATGAGCAAATTTATTAT 2077557 36 100.0 30 .................................... ATCTGGTGCAATCATCCCACCGACTGAGGC 2077623 36 100.0 30 .................................... TTCTTAAGATCGATCATCAAGCTGATCTTT 2077689 36 100.0 30 .................................... ACAACAACCATTTAATTAAAATCAGGAGTG 2077755 36 100.0 29 .................................... CAAGAAGTGTTCAGCAATTATGGACCTTA 2077820 36 100.0 30 .................................... TTATGGTCTCGTGAGCTTGCTCACCTTTTA 2077886 36 100.0 29 .................................... AACTTCAGATCTTCTTAAACCTGTAGAGC 2077951 36 100.0 29 .................................... CCGTCTGTTGTTTCTTCGATAATCAAATA 2078016 36 100.0 30 .................................... CCTACTAACAACAACTTGGACAGAAGGCAA 2078082 36 100.0 30 .................................... CTTTACTTCTCTGATGTGTCCGCGCACATA 2078148 36 100.0 29 .................................... GTGTATTACAAAAGCAAATTTATAGAACA 2078213 36 100.0 30 .................................... TTGTAACTGCATTTTTATTCCTCCTTTTTG 2078279 36 100.0 30 .................................... TGGACTTTGATACTTGTTGACAACACTGTT 2078345 36 100.0 30 .................................... CAAGGTTTTTCTAATTCTTGAAGCTGTTGT 2078411 36 100.0 30 .................................... AAGGTTGCCAAAGCCGACGGTGAAACCTTC 2078477 36 100.0 29 .................................... TAGGAGTTACGGGGCTAGTGAGCCTAAGA 2078542 36 100.0 30 .................................... ATAAGAAAAGTTCGGATTTGGTGAGGTACT 2078608 36 100.0 30 .................................... ACACTTACAAAAATGGCAGAGGATAGAATG 2078674 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 42 36 100.0 30 GTTTGAGAGTAGTGTAATTTCATAAGGTATTAAAAC # Left flank : TGATTTAGAATTTATTTGTAATTCAAAGTATTTTGATGAATTATCAATGATTAAAGAATTATGTACAAAGCTTTGTTATAATCTTTGTGAAGAAAAAGAATTTGATTTTACGTTTAATGATGAAATAGAAACAAGTGCTTTTATAAAACTGTTTTCTTTCTCTCCTAATAATGATTCTTCAGGTGTATTGGAAAAACTTTTATTGTATATTAATTTAGTAAATAAGTATCTAGGTATTAAGTGTTTTATAACACAAAATCTCTATATTTATTTTAGTTATGATGAGATTTTATCATTTTATAACACACTTATTGCTCACGATATTTATTTAGTAGATATAGAAAATATATTTCCAAATCAAATTACTTCTCTAGAAGAAGTAATAATAATTGATAAAGATTTATGTGAGATGATTGACAAATAATATAAAAATGTAATAAAATTAAGTAAAATATCTTATGAATTTACCATGCACATGTAGTGGATGCATTCTATTTGAG # Right flank : CAGCAAAGATTTTGAACAAGTCCGTAAAAAATGGACAATGGAAAAAACACCCTCTTGATGTAGAATATACATCAGGAGGGATTTTTAATGCCAAGAAGTTACCGACACATAAGTAATTACGAAAATGAAATATTAGAATTAAAATCAAAAGGGTTTACTGTGATAGAAATAGGGGCAAAACTTGGTTTTACTCAAAAGCAAGTACATAACTTCATCACACGATACAATAAGAAACAACGAATGCTTGAAGCAGGAAAAGTAATTCACAAGAAGGGTAGACCGCCAAAAGATTATGAAGTCACAGAAGATATGAAAATCAATGAGTTAAAATATATCATAGCTCGTAAAGATTCAAAGATAAAACAATTAGAAATGGAAAATGAATTAATGAGGGATTTTCTCTCGCACACAGGAAGGAAGTGAAGCCATCAATAAAATATCAAGTAATCTTTAAGCACAAAGATAAGTATAGCATAAGTCAAATGTGCAAATTCTTTGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTAGTGTAATTTCATAAGGTATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 5 2108163-2108640 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039381.1 Ruminococcus bovis strain JE7A12 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 2108163 36 97.2 26 .C.................................. TGCTAGGTGTAGCCGTAACGATTGTG 2108225 36 100.0 29 .................................... CTCCCATTTTGTCTAGGTATTCAAAGACT 2108290 36 100.0 27 .................................... AGAAAGCAATAGACGACTATATCGACC 2108353 36 100.0 28 .................................... TCGCAATAAATATGAAGAAGTTCGGGAG 2108417 36 100.0 27 .................................... AAATGCAGGTATTTCACCTATATTAGC 2108480 36 100.0 27 .................................... ATGGTAACTATCTTTACAATGGCATTA 2108543 36 91.7 27 .......A.T..T....................... CGGAACAACATAATCATTGTTGATTGT 2108606 34 88.9 0 .......-........T......-........G... | T [2108619] ========== ====== ====== ====== ==================================== ============================= ================== 8 36 97.2 27 GTTTAATCAACCCTTAGAATTTCTACTATTGTAGAT # Left flank : AAGATTCAATTTTTCTATATATTCAGTCTTACTACAGAGCATTTATGAAGAAATTAGATGTGGATAAATTTCCTGTATTTGACATAGGAGAATAATATGATTATAATTAGTTATGATATATCTGATGACAGAAAACGCAGTAAATTTTCAAAGTACATTAAGCGTTTTGGTCATATGTTGCAGTATTCTGTATATGAGATTGATAATAGTGAAAGAATACTAAACAACATTATTGCAGATATTAATAATAAATTTTTGAAAATGTTTGACCAATCTGATAGTGTGTATATCTTTCAGTTAAGTAGTTCATGCAAAGTTCAAAAATTTGGTTATGCTAAAAATGAAGATGAGCCTTTGCTTGTTGTTACATAATTTGCAAACCTCAGTCTTTATTTTAGATATTCTTTGAAAAAGGTTGTTAAACAATGAAGATTATATGCACAATGAACAATTGCATAAATTACCAAGATGTAATTTATGTAGGGTTAAACAAAGTTAGG # Right flank : TATGTGTATGAAATCTTCATAGGCTCTAGTTTAATTAATCCATATTTATGAAATCAGCCACCAAGTAATATTTTGGTGGCTTTTTGTATAATCAATATTGTGTTTTAAAAATAAATGTAGTAAAATATCATTGAAATTTAGTGAAATGATAGGTGACTTATGAAGTACAAATTTTGTCCACAATGTGGCAGTGAATTAAAGCCTAAAATGGCAGGGGATGATGGTGAAGTACCATTTTGTTATGAGTGCAACAGATATTGGTTTGACAGTTTTGAGAGCTGTGTAATTGTTCTGGTGTACAATGAATTTGATGAAATTGTAGTTTGTATGCAAGATTATATTTCCAAAGTTTATGGCACAATTACTGCCGGATATATTTTGCTGGGGGAAAATGCTGAAGAAACTGCCTATAGAGAAGTGGAGGAAGAACTAGGCATAAAGCTTGATAATCTTCAGTATGGTGGTACATATTGGTTTGAAGATGGTGACAAACTTATGCA # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATCAACCCTTAGAATTTCTACTATTGTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.10,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //