Array 1 9994-7318 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFUW010000009.1 Streptococcus suis strain YnN5 Scaffold9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 9993 36 100.0 30 .................................... GTAACGAAATACAGCTCCGCAAGCCCCGTC 9927 36 100.0 30 .................................... AAAGCCTGTCTGGTGTTGGTGGTACAAACT 9861 36 100.0 30 .................................... ATCCGTCTATCTCTTGTGGCTTGGTTTAGA 9795 36 100.0 30 .................................... TGGGCAGTAAATACTGAGTACATGCATGAT 9729 36 100.0 30 .................................... TAGAATATGATGGTTATGTATATATTAGTT 9663 36 100.0 30 .................................... CTTACTTGATTTGTATGATAACAGTTCTAT 9597 36 100.0 30 .................................... CATCAAGAGGTTACAACACTGCGTCCTACT 9531 36 100.0 30 .................................... ACAAAAAATTGTAAATAATTTATTTTCTAG 9465 36 100.0 30 .................................... TAGCACGCTTGCCGATTAAGTGGTACGGTG 9399 36 100.0 30 .................................... TTCCAAAGGGATTAGACTTTAATTCATGCA 9333 36 100.0 30 .................................... ATCGTGGTAGACAACTTTGAGCAGTTTACA 9267 36 100.0 30 .................................... AAGGTCTTTTTTATTCTTCCCCGAATAATT 9201 36 100.0 30 .................................... TATAGTACCTGATACTAATTTATCAATTTT 9135 36 100.0 30 .................................... GGTTAAGATTTCCAGTCATCTTAGAACCTT 9069 36 100.0 30 .................................... AGATATAAAACCAACAGCGGAAGACTTGTA 9003 36 100.0 30 .................................... AAAAAGAGAATTTAAAACATCATTAAACAT 8937 36 100.0 30 .................................... ACCTTTTAGAGAGTTTCGTTCAGTTTCATA 8871 36 100.0 30 .................................... AGTGACAGAGCCAAAAATTGTCAAAGAGGC 8805 36 100.0 30 .................................... TGAAATTCGGTGGCATCTGCTCTTCCATAC 8739 36 100.0 30 .................................... TTAGAGCTGATTGTTGAAAACATCAATCAG 8673 36 100.0 30 .................................... TGATAGTGACAGAAACCAATTCCACACCAT 8607 36 100.0 31 .................................... GTTTTTAGGGTCGACGATATAGCTAAATTGA 8540 36 100.0 30 .................................... CCAAAAGCATTTAAATATTCTACTTGTTTT 8474 36 100.0 30 .................................... TTTTCTCAAAAAATTTACAGAACTGACACA 8408 36 100.0 30 .................................... TAAAATAAATCATATAAAACACTTGACATA 8342 36 100.0 30 .................................... CTAAGGATAATGACGATACTAATTCCTCAA 8276 36 100.0 30 .................................... GAACTGTGCACCAATACCCATAGATAGCAT 8210 36 100.0 30 .................................... GAACTCACCAAACGAATAAGTAACCCTTGA 8144 36 100.0 30 .................................... TTTACCGTCATCATCTCGAAGTGTTGACCA 8078 36 100.0 30 .................................... AATGAATACCGTATCGAGAATCAGCGGTTG 8012 36 100.0 30 .................................... TCAATCGCAAGTTGTACGGTAAGAAACATC 7946 36 100.0 30 .................................... ATCTTGCATTTCGCACCAGACGGAACCATT 7880 36 100.0 30 .................................... TTGGACTTTTGGAACTTCTTTCAACGGAAA 7814 36 100.0 30 .................................... AGTAGGAACGGAAGAAGTCCATCCTGAGCT 7748 36 100.0 30 .................................... GTATGGAGATGGTCAATGCTATGCAACTAC 7682 36 100.0 30 .................................... ATACAGAAAAGAATTGACGCTGGTAATCAA 7616 36 100.0 30 .................................... TATAATGACGTTATTATACTAGCTTATGCT 7550 36 100.0 30 .................................... TACCGTTAATTGGTAACGGATACGACGCTT 7484 36 100.0 30 .................................... AAATCAAATCCATTTTATAAAACGTACAAA 7418 36 100.0 29 .................................... GGATAGTGACGATACCTAAACCAAAAGAG 7353 35 88.9 0 .........................A..A-.....G | T [7320] ========== ====== ====== ====== ==================================== =============================== ================== 41 36 99.7 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCATTAGGGGTCAAAATTGAAACTATCAGCGATACGATTTTTGATAAAATTTTCGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTGTTATCTTATTTGACGGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACAAATGGCGCGATTACGAGATTTTGTGATAAAAAATAGTCTACGAG # Right flank : CAGTAAGTTTATAAAGGAAGGAGGGGAGTAACTGGATGTCAAAACTGTTATTTTTTAATACTTCTATTTCTAACAGTAGTAGTGAATATTGTAACTTTAATTATCAAAAAAATTACTAAAGAGATTGAAAGAAATAAGTGGGGATGAAATTGATAAAGAGCTTAATTTAATAGGTCTTCCTGATTAAAGTCTGCATTTATATCATTGTTTTAATTTTTTATAATTTTTACGATAGCCTAGAAAATACTGTCGAAATTAATTCCCCTCCATTTTCCTCCAAGATTTCTAACTGACTCTTGTCCCACCCCCTTTTCCATGCTATACTATATATAATCGTTTTATTTCAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGGCTGGGAACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGTCGCCGGGTTGCGGAAGAGGGCTTGCAGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //