Array 1 917096-917877 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHJS01000001.1 Sulfolobus islandicus M.16.46 contig001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ======================================== ================== 917096 25 100.0 38 ......................... TTAACATAAGAGCTTCCGTTTACTTCTATTACTCCTCC 917159 25 100.0 39 ......................... ACTAGATGTTTGAACTCTACAAACTCGTAGACCTTACAA 917223 25 100.0 38 ......................... TCATCTTCTATTTGTTGGACCACCTGGGACTGGTAAAA 917286 25 100.0 37 ......................... TTACCAACCCGTTTTTATTGACAATATAACGGTTGTA 917348 25 100.0 37 ......................... TGATCAATCACTTGTATTCTTTTGTGTAAATTTCGTC 917410 25 100.0 39 ......................... ATAGATATGATGAGATGGCAAACAATGTATACTAGGAAA 917474 25 100.0 35 ......................... ACATAGAGGGCGTTCCTTGTCACTATTAACCATGT 917534 25 100.0 39 ......................... TAATAATGATATATTGTAGATATTATCGTTGCCCGGGGC 917598 25 100.0 38 ......................... ACTTTTGCGTTTTCATTTGTCTCTTCTTCTTCAAGTAG 917661 25 100.0 39 ......................... TTTGTTGGGTGTTCGTCGTTGTCCCGGCATTGAGGTTTA 917725 25 100.0 40 ......................... TAAATTTCTATGTTTCATTTCAAGCATTTTTCTCTACCCT 917790 25 100.0 38 ......................... TATTTATTATAACACAAAGCACTATACACTTCAAAATT 917853 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ======================================== ================== 13 25 100.0 38 GATTAATCCTAAAAGGAATTGAAAG # Left flank : AAAGATAGATTAAAAAATTAACCATAAAAGAGTTCCTTATTTTTTGATCGATATTTATTTTTTATTTGGTTAAAAAGTTTTTACTACTACATTTCTGGATCAGACGTGGAATTAACGTGATTATAAGTCCCTTTAAAAGGATAGTTATGCGTTAGAATGAAAAACAATTATACTAAGAAGCGCAGTTACTAAATTATTGTTTACCATCTCTAACGATTTTATAATAATAGAATGACTAAAATGTTACCTAAAAGTTCGTTCTTATGAAGTGGTTTAAAAGTGTCGGAGTTCGAGTCTCAATGCGACCGAAACGAATCTTTTTCGTATAATTGAACGTTTATAAATAATGGGGTATATTTCAATTGAATGGTAAATCCTTGCGACCAAAAATTGTTAAATTAATTACAACTAGAATCGGTCACATGAGGAGTAAAGGATAATAATGAAGATTTATAAGCAAGAAAGGAGTAAAGTAAGATAAGAAGTATAAAAACACAACA # Right flank : AATTTGATCTATCGCGGGTATTAATTTGTTCATAACTGGATTAATCCTAAAAGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAATCCTAAAAGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: F [matched GATTAATCCCAAAAGGAATTGAAAG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1-915 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHJS01000002.1 Sulfolobus islandicus M.16.46 contig002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================== ================== 1 25 100.0 41 ......................... AGATATTATCCTTATATTCACCTACTTTTTGCAGATATTTC 67 25 100.0 39 ......................... TAGAATATCAAGCAGATAAATTAGTAGTACAAGATGTGA 131 25 100.0 37 ......................... TCTATTAATATTGTATGCAACATTATTTTAACTTTGC 193 25 100.0 39 ......................... TAGACAGGTCAGTATAGGTCTTACCATCTAATAAGCAAG 257 24 96.0 42 .............-........... AAATTACTATCTTGAATAGAGATATTAGCGTTGTCTATTGCT 323 25 100.0 35 ......................... CTATATATGGGAAGGCTTATGATCACCTAGTAGAA 383 25 100.0 40 ......................... GATGAATATGAAGAATTTGCTACTATAATAGTGAAACTCC 448 25 100.0 39 ......................... CTCATCACCCCATGTTTCTTCAAATCCACCCAGATTCTC 512 25 100.0 35 ......................... AAGAATCCCCAAGGATAAACACTAGCATATCGACC 572 25 100.0 38 ......................... TTCCAAATACACGTTTATTCAATATGATATCCAGCAAC 635 25 100.0 41 ......................... TTATTATTTACAGTTATTCTTATCTTTGCCATCCTCACCAC 701 25 100.0 37 ......................... TCAAAATGAGTAATTTTCTTCATGCAACATAATTCAC 763 25 100.0 38 ......................... TCTTTCACATACGTTTCTATACGCTTCTTCTTTCCATC 826 25 100.0 40 ......................... AACATGCTCAAAGCAAGTGATGGGACGATTACTAACCTAC 891 25 88.0 0 ...C.....C....C.......... | ========== ====== ====== ====== ========================= ========================================== ================== 15 25 98.9 39 GATTAATCCTAAAAGGAATTGAAAG # Left flank : | # Right flank : GTAATAAACGATTGTTTGACGACATTATTTACAGGGAGTGTTCTCGTGCAGTCATCTTATTCGAGAACATATAGTAAAATTATATCAGATTTTGTCTAATATTCTGTACTCCCTTCCGGTAAGCCTCATTCAAGGGAGTCATCTCCCTTGAATAGATTACGGGATAAATGACGTTCAACAAGGCAAGACTATAATCAACCATCCTCTCACTCCTGCTCACAGCCCTAGTATCCCTAGCTAACCTAGCCAAGTGGGCCCTACAGTAAGAGTTATAACTCTCCACGGTGTGAGTGTACTTTTTGCTCGCAACATGATTATCAAGAACTTGATAAAAAGAGTAATCATCAGTATAATTAACCTCACTCTTAGGCAGAGATCTCCAGAGGAAGCTGAAAGTCTTGTAATCTCTATTACCCGTAGTAAAGAAGGGTAGACCATCAACCAAAGCATTCCAAATCTACACCTCTTGGGACCATATCTAACTCTAAGGTAAGTCCAAC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAATCCTAAAAGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: F [matched GATTAATCCCAAAAGGAATTGAAAG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 26310-20332 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHJS01000002.1 Sulfolobus islandicus M.16.46 contig002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================================== ================== 26309 24 100.0 38 ........................ TGTAGAAATTTATCTTCCCCGCTTCGAGATATTTCATG 26247 24 100.0 39 ........................ AACAACCCCGCCATAAGGGTCAAGATAACTATAGTGAAA 26184 24 100.0 39 ........................ TAATAATATATTTATATATCTTTTCTGCATCAACTATCA 26121 24 100.0 42 ........................ ACTTTTACACTGTTGCAAATTTAACCTTTACTGTTGCATTCA 26055 24 95.8 39 .......................A GCTTAACGTCTCTTCCGGCAACCTGTCTATCCCGTGGCT 25992 24 91.7 38 ......................GT TCCCTCCCTTTCAGCGATTATCTTTGAGATTGTAAGCT 25930 24 100.0 38 ........................ CTTTCCTTCTTTTACTTGTACCAGTAAACACATGGCGG 25868 24 100.0 40 ........................ ATTTCAATATTCGGCATGGTCTCCATTACGCCTTCTACTA 25804 24 100.0 40 ........................ TCTGATGCAGAGGGCATGGACTTATTAGAAGAAGAGACAA 25740 24 100.0 40 ........................ TTAGATATTTCGCTAAGGCCGGAGTAAATACCTCCCCCTT 25676 24 100.0 39 ........................ TTTGGTAACTCAACTTGTATACTTCTCCTTTCACCTTTA 25613 24 100.0 39 ........................ AGGTATTGAACAGGTGGCTCGTTCTCACCGGAAGGTAGT 25550 24 100.0 40 ........................ TCCTATCTCCTCAAAACCTAGCGATGTTAGCTACAACAGC 25486 24 100.0 35 ........................ CCTGGATCATGATATGTGGTGCATTTTTAATGAAT 25427 24 100.0 39 ........................ TGATTTTCCGTTTTCATTAACTAGGGCTTGGTTATCTTT 25364 24 100.0 38 ........................ CACGACATTAGAAGGAGTGGGGCGTATTGGCGTATAAA 25302 24 100.0 42 ........................ CCACCTCGACGACGTTTTGCCCTTCTCGACCTTACACCGTAC 25236 24 100.0 38 ........................ CTAAAGGTTGGAAATTCTCAATAGAGATCTGTGAGGGA 25174 24 100.0 43 ........................ TTCTCTATATATTCAACGTGGAGGATTTTGGCGATAAATTTTA 25107 24 100.0 39 ........................ TTACAATTATTCGTTCGTGATTTGTCCTTAATTGTAGAT 25044 24 100.0 41 ........................ TGAATTAACCCACGAATTATTACATTACTAGACGCAAATGG 24979 24 100.0 38 ........................ AAATTTTGTAGTGCTTCTTGCAACAGTAAAGCTCTAGT 24917 24 100.0 38 ........................ CCTTTATCTTCGGTAAGCAAGTGTTATTGGGGACACCA 24855 24 100.0 38 ........................ TATTGTAATGTACACATTTCCTAGGTTACTTCTTTCCA 24793 24 100.0 38 ........................ TCCTTTGGAACTCCCTCAATACATCTTTGTGATATAAA 24731 24 100.0 40 ........................ CGTATTCAATATCATTTTTAATAAGAAAATTAAGAAGGGG 24667 24 100.0 41 ........................ TTCCTATTAATTCATCAGTATCTTTATAACCACTGTTTACC 24602 24 100.0 40 ........................ CCTTACTTTTCCTTCCCCTTTGTATACTTAATATACTTAA 24538 24 100.0 39 ........................ TCACAAGTTTCTTATCTTTATTTATAGATGGTATTATAT 24475 24 100.0 40 ........................ TAATAAATTATCTTTATTGTTCCCTCATAATCATATTTAA 24411 24 100.0 38 ........................ ACTGTACTTCTCTATGTTTTTGTTCCTTATAAATATTT 24349 24 100.0 42 ........................ ATTCTTCTAAAATCATTCGCAAATCCTCCTCCTACATCCCCT 24283 24 100.0 40 ........................ GTAATCATATCAGGAAACGAAGATGTTTACTTTCCTAATA 24219 24 100.0 40 ........................ CTGTAGAACTCGTCCTCGTCGCCCCAAAGCGGAGCGAAGT 24155 24 100.0 38 ........................ CTAGTCTCCAACCACTTAACTGGGGAGTTAAGTGGTTA 24093 24 100.0 39 ........................ AATGAATTCTATTTCTCTCGGCTCTCTTGTGTAGAAAAG 24030 24 100.0 38 ........................ TACTCTGTATTATCCGGATAAAGATAGAATACTTTTCT 23968 24 100.0 41 ........................ TAAATAACGAAAACCTCCTTACCAGACTCCATCTCTTCCTC 23903 24 100.0 39 ........................ TAAATATATTCTTAGCGGTGCTAAAGTAGTGACTACAAT 23840 24 100.0 40 ........................ TCTATATTATTAACTTCTATATCTATGTAAAGTACCTTAT 23776 24 100.0 39 ........................ GTGTTATATTAGGGTATCTACTAGGAACAACATTATATG 23713 24 100.0 38 ........................ AGTAATGTAACGAGATGATTAGGTTTGAACGTGTAAGG 23651 24 100.0 39 ........................ GGATTAAATATAGAAGTGAAACAGAAACGAAGAAAAGAA 23588 24 100.0 41 ........................ AATACTTCATCAATAAGTAGACCACTGTGGTCAATTGGCGT 23523 24 100.0 39 ........................ CTCGTACTTCTTACATGATGGATAATGAGTTCTGCAGGT 23460 24 100.0 41 ........................ AATCCTTATTCTTTGACCTGCTGAATAATAATTTATTAATT 23395 24 100.0 37 ........................ TATCTTTTAGCTACTGGTACTACTAAATTATTGACAA 23334 24 100.0 37 ........................ ATAAAAAGACCATCTAGTAAAATTCAATAGAAGTTTT 23273 24 100.0 41 ........................ TTAAACTATTATAAGTCTATGGAAGTGACATTTGTCTCTAA 23208 24 100.0 39 ........................ CTATATTTAAACATTTGTCTGGCAGACTTTTAAAGTTTC 23145 24 100.0 38 ........................ ATTTTAGTCAAGAAATCTATTATATCTTGAGTATTAAT 23083 24 100.0 38 ........................ ATCCTCTTCCTGGACTCACGGGACGTCGAGGTCTTGTT 23021 24 100.0 41 ........................ CTCTTCGTTGAAGAACGACGAAACTGTTTCAACCACATATT 22956 24 100.0 39 ........................ TTTACAGTGATGCGTATCGTTTTCAGGATCAAGAAGTGG 22893 24 100.0 42 ........................ AAACCTATAAGCCCTAAACTGAATTCCTCTTCTTTCTTTTGT 22827 24 100.0 41 ........................ TTATCTTTCAACAATACAGTATGCATGTTTCAGGGATGCCG 22762 24 100.0 38 ........................ TTTATCGGGGTCATCCCATGTCCGCAACCCAAAATCAA 22700 24 100.0 39 ........................ GGAAACTATAATGAACTTATGAGAATTGGGAATGTTGAA 22637 24 100.0 40 ........................ ATTACTTGCAAGACTTGGTGGTTTGCCCCATAGTTAGTAT 22573 24 100.0 37 ........................ TCATTATACTTAATTATGGATATTCAAACAGTTGAGG 22512 24 100.0 41 ........................ CACGATAAACATCTTTCTCGACAATCTAGCGTTTGCTCTAT 22447 24 100.0 40 ........................ CATATCCTCTCTTCCCTCACCCAATTGAAGAAGAACCCTA 22383 24 100.0 38 ........................ ATTTCAATATATCTTGTTGTTAATAATAAATTTCATGA 22321 24 100.0 39 ........................ ATTGTAGTCAGAAAGTCTATTATATCTTGAGTAGTAATT 22258 24 100.0 40 ........................ CCATTGGTAAAATGATATCATCACTAGAATGTTTATTATT 22194 24 100.0 38 ........................ GTTTCATCGAGACCACTTAGGAAGAAGTCCTCTAGTTC 22132 24 100.0 39 ........................ ACAACAGAACCAGCTGGAGCACTTGCCGCAATATTAAAG 22069 24 100.0 39 ........................ TCATCTCACCCTAGCGTTATTATATCATTATATAAGGAT 22006 24 100.0 40 ........................ TTGAAAATGATGATGAGCCTCATCTATCACAAATAAAGTA 21942 24 100.0 39 ........................ AAGCCCTGGCAAACGTTTACGCTTGAAGTGGGAGTTTCC 21879 24 100.0 41 ........................ TGCGATTTCGCCGTTTGGCTTTAATAGCTCGGGGTGATTCT 21814 24 100.0 39 ........................ ATAATCGTTCAGGGTGGCAACCCACAGTTCGTGATACAA 21751 24 100.0 38 ........................ TCTACGGTTTGTTCGCTCCAACGCTCGTGCAGAAGGCG 21689 24 100.0 41 ........................ ACCGCTAGCTCCGGAAGGAACTATTATGTTTATCGTTTTGC 21624 24 100.0 39 ........................ ATAGAACCCGAAAAAGTCACATACGGCGGTCAAGAAATT 21561 24 100.0 38 ........................ ATAAGAAACACTTCAAAAAGTGTTATCATTCTTCCTCA 21499 24 100.0 40 ........................ ATCGCATTCTTTTTTCTTGAAATATAGAAAAAAATCCGGC 21435 24 100.0 40 ........................ TATCCCCCTAGAAGAATGTTAATATTAGCTAAATCTGATG 21371 24 100.0 39 ........................ AGAAGAGGAAAAACTTGTAAGTCAAAATTCAATTTATTT 21308 24 100.0 39 ........................ CTTCAAATTGAATGCTTAATCGTTTATCTTTTTTATAAT 21245 24 100.0 39 ........................ ATACTAAGAAGTAACGTAACAGCTTCTGAGAGAACAAAG 21182 24 100.0 41 ........................ CTTGTTCTAACGTCGCATATGCAGAATCTATTAATCCGCGT 21117 24 100.0 41 ........................ AAGATCGTGGACGCGAGCACCGTAGACGAAGAGATAATCCT 21052 24 100.0 42 ........................ CTACGAATTTAACGCCCGCCCTAGATATCAATGATGCCTCGG 20986 24 100.0 38 ........................ TTTGCTATTATCTCTTCTTCTTTTAAGTTGAGTGTAAG 20924 24 100.0 39 ........................ TAACCTTAGATACATCGCTGACGTCAGTAGATATGCAAA 20861 24 100.0 39 ........................ ATGATACCAACATCTTGAAACAACTCAATAATAAACAAG 20798 24 100.0 38 ........................ CTTTTTAACATTAATATAAATAACATAATCGATATCAA 20736 24 100.0 40 ........................ CCCTATTAGTTCATCAGTATCTTTATAACCACTGCTTACT 20672 24 100.0 41 ........................ AGCAATGTAATTTATAGTGTAGTAGTGGAGGTCGTGTTTAC 20607 24 100.0 39 ........................ TCATCCTTCTCGTGGCTATATATAAATCCACCGAAACCG 20544 24 100.0 40 ........................ AACTCCAGTACTGCTTCGCCGTAGGATCCGTCCTCAGACG 20480 24 100.0 39 ........................ TTTCTATTAAGAGAAAGTTACACTTTATCAAAAGACACT 20417 24 95.8 38 ...........G............ GAAGTCTGCCGCTTAGTACTATGAGCTTAGAATCTATA 20355 24 95.8 0 ........T............... | ========== ====== ====== ====== ======================== =========================================== ================== 95 24 99.8 39 GATAATCTACTATAGAATTGAAAG # Left flank : GCTTTATTGGGGGCATATGATAGTTCCATCCCCGGAGCTCCTCTTCAATAGGGTCTGAAGCCCTATATGAGTGGAGCCTTCGTAACTGTCTAATTATCTGCGACCTCATAATATAATAGTAGTTGAAAAATCTAAAAACCGTTTTAAGGAGTGGGGTAAAGACATTCCCAAGTTTACTAGGGATTAGCCTAGAATTCTGAGTGCCATCTCTATATAAAGAGCAATAATAAGATTAGGGAAAGAGATTACTCTACTGTTAATGGAGTTGTTTTGTGGTTTTGTATTTTTGTCCCGTTTTTGTAAGTGGTTTTCTTTTGCGTTTTATGGAGGGGAGGTAGGGTGTTGTCCTAAAATAATTACCTTTATGAAGAATGCCTTATTATCCCGGGTTTAGTAGGGAGTGAAAGGATGAGGAGAAAAATTGAAAAGATAATACAGAGTAAAGCTTATAAATAACGAAGAGAGAACAAGATATTAGATAAAAGTTAATAAACCCTCAG # Right flank : TATACTATATTCTATGACTTGTTTGAAATCTAAATCTAGGGAAGCCGTATGGAAAAAGACGAAGTCCTAATAGATATAAGTACGTTTATATCGAATAAGAGAAGAAAGGGGAAAGTTAGTGTAGTAACGCTAATAGAAATTATAGAATGGGCTTTAAGGAAGTATAATGAACATAGTAAAAAAGGTGATAAATTGAGGGCTTTAGGTTACCTAAATCTCATAACCTCACTTCCGCTAACTGTTGATGAAGTAATTGAGATAAGAGGTGATGAAATAAGAGATCTAGTGTATTACGTAATTGAGAAAAATTTAGATCCTACTGATGCTTATTTTGTAGTTTTAAGCAAGAGGTTTAAGATGCCTATAATTACAACGGATAAGGATTTCGAAAGGATTAAGGATGAAATAGAAGTTATATACCCATGAAATAACGGTTATGTAAAATCTATGCTTTGTGGGCTATATTTTATGATAGCCAACTAGAAGCATAGAGGTATAGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAATCTACTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GATAATCTCTTATAGAATTGAAAG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [2-3] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 3 30908-35149 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHJS01000002.1 Sulfolobus islandicus M.16.46 contig002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================= ================== 30908 24 100.0 41 ........................ TCATTTTAGACATTGTGTCGAGGAGCATGGACTTGATGTTG 30973 24 100.0 40 ........................ CTAAATATTAAAGTTTTGCATTCTTTGTACGCGTCACCAG 31037 24 100.0 41 ........................ GTAAAATTACAGAATCTCTTTATAAAATTTTAGAGCAGAAG 31102 24 100.0 41 ........................ ATCAGAGTTGATTATTTGCCAACTGGTGCAGTTCTTATAGG 31167 24 100.0 36 ........................ ATGGTTGAAAGTACGTCATGGAAAGTACTACCGTAT 31227 24 100.0 39 ........................ CTTCTAATTCTTCTTTTAGCCTTGATGCAATCAGTATCA 31290 24 100.0 41 ........................ GTATTGAACGCAGATATTAAAGCAGCATCTTCATATTCCGT 31355 24 100.0 43 ........................ CGGCGGTTACAACAACAAGTACTGCATACGTGATGGTGGGTTA 31422 24 100.0 41 ........................ TTGATTAACACTAGAAATCGCATTTGAAATAATCGTTACGG 31487 24 100.0 37 ........................ GTTCTCTGTTCTGCCATATCGCTATCCAGTAATCACT 31548 24 100.0 39 ........................ ACCTAGTGGTAATGGGGGATTCGCGTTAAACGTCACCTT 31611 24 100.0 38 ........................ ATTTATAACAAACTCCAAGAATGGGAGAGAGTAAACAT 31673 24 100.0 39 ........................ CTTTTCTGTAATCGCTGGGATTCCTCATTATCAGATAAT 31736 24 100.0 38 ........................ TGGCTTGTTAAGCCAGGGAACTTACACACGTAACGTTT 31798 24 100.0 39 ........................ GAAATACTTTTCGCTAACGGAGAGGTTAGATCTGCGGCT 31861 24 100.0 39 ........................ CCAGTTGTCGCTTCATATGCAACATCTATCCAATACGTT 31924 24 100.0 40 ........................ AATGGCAAAAGGAACTAGTTGAATCTTCTCTTAAGTTAAA 31988 24 100.0 41 ........................ ACTACCATCCAGTCCCTACAATTTACCGGGTACAGGTCTAC 32053 24 100.0 38 ........................ TCTGAAGTTGTGCCCCCCTCACTTTCACTTTCCTCCTC 32115 24 100.0 39 ........................ TGTAACGGTTGAATATATTAATCACGTACACACGTATGT 32178 24 100.0 38 ........................ TGGGAAATACTCATCCGCCATGTTTTCACTAAAACATA 32240 24 100.0 37 ........................ ATTACTAAAAGGTCGTTCTTGGGATCGTATCTATATC 32301 24 100.0 43 ........................ ACAAATAGAATTGCGACCGGGTACAATTTTGACAACAAAACTA 32368 24 100.0 38 ........................ CTTACTTTATGGTCCCTTTCTAATTATGCTGACTTCAG 32430 24 100.0 38 ........................ ATATTATCATCATTGAATATCTCTACTGTATATGTTTG 32492 24 100.0 42 ........................ CTAGCATATGTTAGATTTAGCGATTGAATTACAGTTCCCGCT 32558 24 100.0 39 ........................ GTTAGCAGAAATAATAGCTACATATGACCCTAACAATGT 32621 24 100.0 39 ........................ TTAAGTTATTGGGGACAATACGGGGGATTTTTATTCAAT 32684 24 100.0 42 ........................ GTAAATCCATATGAGTTCTATCAACTACTTCAGCAAACTGGA 32750 24 100.0 43 ........................ TAGAAATAGTATTTCCGTCGGTGGTAGTTAAGTGCTCAAAAAA 32817 24 100.0 39 ........................ ATCTTTGGGAGGGCGAGCGGGTTTATCCCGAAGTTCGGG 32880 24 100.0 38 ........................ AAACCGCATCACAGTGGTTTTGAAGAAGTAAATATTTA 32942 24 100.0 41 ........................ TTTGTGAGTTGGAGACCGTTACGGCCACGCATTCCACGCGT 33007 24 100.0 40 ........................ ATAATACGGTACCTACGTCCATTTGCGACGTCTCATTAAT 33071 24 100.0 43 ........................ AGAACGGGTAAGCATTCCTCTACCTTATGCACCACATCAATCT 33138 24 100.0 39 ........................ TAGGGTTTGGGATAGCTAATGCCAATCTAAGTCATCTAT 33201 24 100.0 38 ........................ GAACAGGTCGAAAGAGCTGAGCTTTGGCATGCAATTTA 33263 24 100.0 37 ........................ TTAGTTTGAACAAGTTGGACATAACGTCCGTAGAACC 33324 24 100.0 40 ........................ TATTGTCCTGCAGTCTCGTAATATACTTTAGTCCCATACA 33388 24 100.0 43 ........................ TCTATATTGAATTCTATGCATATTCAATATTTCTCAACACCTT 33455 24 100.0 40 ........................ TCTACAATTTTGGAGGAATTTGGATTAGATTTAACTTTAT 33519 24 100.0 40 ........................ TAATTTTTTTCGTTGTTTTTTATCAAAACACAAAGCACTA 33583 24 100.0 42 ........................ GAAGAAGAGTTAGCAATATTAGATCTATATTGCGCAAATATG 33649 24 100.0 37 ........................ AATCTACGGTGCAGCAGGTCTATTTTTGGAGTATTGA 33710 24 100.0 39 ........................ AGTACAGGGACGTTCAATGAGTAAGGCTCCGCAAGGTAG 33773 24 100.0 45 ........................ TTTGTAACCACCTTTTCGGTTACGCTACTCAAACTTACCACTAAT 33842 24 100.0 41 ........................ AATTCTTTCAATCTTTCTCTTATTGCCTCGTTAACAAATTC 33907 24 100.0 39 ........................ TAGACCCTTCTTATCTACTTAGGAAGTTAGACGGTTACC G [33912] 33971 24 100.0 38 ........................ AGAAAGAAACTGGGCAGAACTAAGAAACTTTATATCAA 34033 24 100.0 40 ........................ TCATTTGTATACAATCTTATACATATTTCTTCATTATTCT 34097 24 100.0 39 ........................ ACGCACCTAAAAATTGCTATAGCCTTTGGAGCTGCGGCC 34160 23 87.5 42 ........C....-.G........ CGCCAGGACGGAACAAAGCTAGGGGAATTATTTGCAACGTCC T [34167] 34226 24 100.0 41 ........................ TTATTTCTCAGAATATCAGAGAAATGGGATCGACAAACGGG T [34242] 34292 24 100.0 40 ........................ TATAATAATTAAATACTTTGGTGTTAGACTGAAATCTCTT 34356 24 100.0 42 ........................ TACCCACCCGTTGCATTTGTTATCTCTGCGGTAGTATACTTT C,T [34365,34371] 34424 24 100.0 41 ........................ TCAAAAATTTGTTCTTGACAGGTCAGAAAAGGACTGGTAAG A [34443] 34490 24 100.0 43 ........................ TCAACTACTAACAACTCCTGCATATGTATTTCCTACAACTCTT 34557 24 100.0 40 ........................ GTGATAATAATCCAGTTGAAGTTGAAGTAGTCATAGATGT 34621 24 100.0 41 ........................ TGTACTCTGGATAGGGGGAACCCGACAATGAAGATAGCCTT 34686 24 100.0 37 ........................ GTTCTAATAGCTTCTGTTTCAGAGATGGGTTAGCTAA 34747 24 100.0 39 ........................ AAGCCCTATTTAGGGGGTAAACCCCCTAAAACCCCACGT 34810 24 100.0 40 ........................ CTTGACATTATTCTTATACAATCTAAACAATAACTATGTG 34874 24 100.0 40 ........................ GTTTTATTAGATAAAAATGAAGTTGAAGAAAAAATTATTA 34938 24 100.0 37 ........................ ACTGATACTCTATCCCATATATTGCAAGATCCCTATC 34999 24 100.0 40 ........................ ATCTTCATCTCCAAACTACTGCTATTAACTTATCTCACTC 35063 24 100.0 39 ........................ AAACGAAATATCGAAGGCGTCAGATGAGGAAAGGAAGAA 35126 24 95.8 0 .......................T | ========== ====== ====== ====== ======================== ============================================= ================== 67 24 99.8 40 GATAATCTACTATAGAATTGAAAG # Left flank : ATTTCATAAACTTTTGGAAGAGGGTAGTTTAACCTTGAAGTTTGAGCTCTTAAGCTATCTATTGCAGTCCTAGTTCCAGAGATAATTGGAGAGGGAACAACGATTACAAGATTATCTTCTTTCTGTGCAGAGGTTTCGTTTAGAAGTCTAAGCAGAAAAGTTTCATTAAATCCCATGGTCACAAAATATGATTTCATATCATAAAATTGGTATTACCAACTCATAAATCTTTCTATAACTTAAGAGCTTGTAGCTGAGGGAGTTGTTTTGTGGTTTTGTATTTTTTGTCCCGTTTTTGTAAGTGGTTTTTCTTTTGCGTTTTATGGAGGGGAGGTAGGGTGTTGTCCTAAAATAATTACCTTTATGAAGAATGCCTTATTATCCCGGGTTTAGTAGGGAGTGAAAGGATGAGGAGAAAAATTGAAAAGATAATACAGAGTAAAGCTTATAAATAACGAAGAGAGAACAAGATATTAGATAAAAAGTTAATAAACCCTCAG # Right flank : TACTATAATGTAAGTTGGATTTTGTAAGTAGAGTCTTTATTTACAATAGTTACAATAGAGTAAGAGGACTAGTTTTAGCTTAAGATGTTGAAAATGAGCGACTTAATGGAAGCAACTAGATATATTTCGTATTAGCAAATATCATTTTTCTTTCGCATTTATTAATAAAAGTATATAAAAATCTTGGTGAATTTAGTTGACGTAATACGAGATACTCTTTTCCCTTAACAAGAAAAATTTAATACCTCATTTTTCATATTTAGGGTATGATACTAATCTTAACACTTGGATTCGACGAGAAGTTTCAGTACCGCGCATTAATGAGACAAGGCAAGAGTATTGAAAAGGTCATTGTTGTTGGAGGGTTCAAGGAGGAGAAGGCTAAAAAAGCGTTAGAATCGCTCACTAATTTTCTAAAAACAGTTAACGTTCCTTATGAGACTATTGAAGTTGACCCTAGAGACTTTGAAGATATTGTTGAGAAAGTTGGCAAGGTTATT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAATCTACTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GATAATCTCTTATAGAATTGAAAG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], //